Wall clock time and date at job start Tue Mar 31 2020 23:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99991 * 2 1 4 4 N 1.46502 * 109.47184 * 125.00364 * 3 2 1 5 5 C 1.46502 * 119.99512 * 275.00066 * 4 3 2 6 6 C 1.50702 * 109.46907 * 274.99301 * 5 4 3 7 7 H 1.08003 * 120.00006 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99886 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99884 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99927 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47411 * 60.00411 * 10 8 6 12 12 H 1.48504 * 109.47194 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47296 * 300.00344 * 10 8 6 14 14 S 1.65595 * 120.00266 * 94.99376 * 4 3 2 15 15 O 1.42103 * 106.40205 * 156.45833 * 14 4 3 16 16 O 1.42104 * 106.40272 * 23.54356 * 14 4 3 17 17 C 1.76196 * 107.22222 * 270.00601 * 14 4 3 18 18 C 1.38259 * 119.93869 * 269.72518 * 17 14 4 19 19 C 1.38202 * 120.11001 * 180.32964 * 18 17 14 20 20 C 1.38697 * 120.06460 * 0.02562 * 19 18 17 21 21 C 1.38974 * 119.82631 * 359.90097 * 20 19 18 22 22 C 1.38195 * 119.94838 * 89.99794 * 17 14 4 23 23 O 1.36101 * 120.78519 * 180.26783 * 21 20 19 24 24 C 1.43172 * 116.71998 * 342.81351 * 23 21 20 25 25 C 1.53465 * 108.25008 * 46.16016 * 24 23 21 26 26 O 1.36112 * 119.39560 * 179.81351 * 20 19 18 27 27 H 1.07995 * 120.00391 * 180.02562 * 1 2 3 28 28 H 1.08008 * 119.99488 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99867 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47275 * 4.99759 * 3 2 1 31 31 H 1.09000 * 109.46688 * 244.99927 * 3 2 1 32 32 H 1.09002 * 109.47237 * 34.99709 * 5 4 3 33 33 H 1.09006 * 109.46525 * 154.99804 * 5 4 3 34 34 H 0.97002 * 119.99702 * 179.97438 * 9 8 6 35 35 H 1.07997 * 119.94717 * 0.30575 * 18 17 14 36 36 H 1.07998 * 119.96268 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.96192 * 359.71362 * 22 17 14 38 38 H 1.09002 * 109.71343 * 165.85481 * 24 23 21 39 39 H 1.09004 * 109.70495 * 286.47553 * 24 23 21 40 40 H 1.08997 * 109.70703 * 59.95268 * 25 24 23 41 41 H 1.09004 * 109.71370 * 180.58219 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5285 1.7621 2.4522 6 6 2.5993 3.2646 2.5450 7 1 2.9549 3.8413 1.7039 8 6 2.2091 3.9029 3.7031 9 7 1.7755 3.2005 4.7270 10 14 2.2961 5.7653 3.8177 11 1 1.4340 6.3668 2.7688 12 1 1.8245 6.2014 5.1567 13 1 3.6995 6.2085 3.6192 14 16 4.5713 0.8758 0.9173 15 8 5.3148 1.5045 1.9522 16 8 4.8568 1.0543 -0.4633 17 6 4.6594 -0.8571 1.2234 18 6 4.9191 -1.3200 2.5001 19 6 4.9958 -2.6784 2.7429 20 6 4.8128 -3.5810 1.7058 21 6 4.5503 -3.1158 0.4228 22 6 4.4745 -1.7513 0.1860 23 8 4.3622 -3.9842 -0.6081 24 6 4.8119 -5.3286 -0.4076 25 6 4.3364 -5.7931 0.9756 26 8 4.8950 -4.9157 1.9595 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4983 1.4371 2.5982 33 1 3.1614 1.3203 3.2220 34 1 1.5013 3.6496 5.5419 35 1 5.0627 -0.6189 3.3089 36 1 5.1983 -3.0373 3.7411 37 1 4.2715 -1.3871 -0.8102 38 1 4.3913 -5.9757 -1.1773 39 1 5.9004 -5.3626 -0.4525 40 1 3.2481 -5.7530 1.0228 41 1 4.6755 -6.8130 1.1576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298735687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:59 Heat of formation + Delta-G solvation = -88.576720 kcal Electronic energy + Delta-G solvation = -27964.856568 eV Core-core repulsion = 23938.732833 eV Total energy + Delta-G solvation = -4026.123735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47727 -37.87006 -37.52986 -36.70874 -36.32286 -35.19306 -33.18536 -31.86916 -31.54027 -30.89184 -28.75928 -27.46430 -25.15946 -24.90313 -23.18061 -22.29474 -21.48563 -19.78540 -19.19719 -18.36970 -17.64612 -17.48738 -16.69998 -16.53314 -16.06908 -15.69307 -15.60618 -15.23366 -14.69020 -14.67579 -14.43150 -14.09844 -14.02566 -13.67218 -13.55929 -13.02499 -12.97077 -12.42229 -12.22251 -12.07302 -11.71630 -11.61199 -11.42887 -11.38860 -11.27769 -11.09502 -10.91235 -10.89088 -10.68497 -10.55686 -10.42156 -10.00701 -9.76889 -9.09154 -8.91662 -8.42794 -8.40119 -8.09409 -6.04318 -4.08270 0.69631 1.05772 1.18145 2.57166 2.67637 2.93515 3.32221 3.35965 3.39519 3.44229 3.80653 3.87261 4.33632 4.35652 4.45208 4.47369 4.54149 4.76261 4.92534 5.07531 5.11433 5.17748 5.24836 5.30970 5.35224 5.47413 5.66571 5.69099 5.78547 5.92392 6.12391 6.13504 6.30193 6.40039 6.48106 6.58497 6.90633 7.01814 7.15235 7.26336 7.40480 7.60002 7.92817 8.21484 8.93733 9.56709 11.04219 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.003657 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.414612 B = 7655.676380 C = 7954.337258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.145 3.855 4 N -0.975 5.975 5 C 0.256 3.744 6 C -0.529 4.529 7 H 0.061 0.939 8 C 0.064 3.936 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.274 1.274 14 S 2.687 3.313 15 O -0.938 6.938 16 O -0.974 6.974 17 C -0.669 4.669 18 C -0.009 4.009 19 C -0.135 4.135 20 C 0.096 3.904 21 C 0.023 3.977 22 C -0.014 4.014 23 O -0.305 6.305 24 C 0.020 3.980 25 C 0.018 3.982 26 O -0.305 6.305 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 -18.252 -8.603 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.019 3.981 4 N -0.814 5.814 5 C 0.135 3.865 6 C -0.569 4.569 7 H 0.080 0.920 8 C -0.139 4.139 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.199 1.199 14 S 2.774 3.226 15 O -0.928 6.928 16 O -0.964 6.964 17 C -0.753 4.753 18 C -0.028 4.028 19 C -0.154 4.154 20 C 0.050 3.950 21 C -0.022 4.022 22 C -0.034 4.034 23 O -0.219 6.219 24 C -0.056 4.056 25 C -0.057 4.057 26 O -0.219 6.219 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.066 -17.786 -8.637 20.008 hybrid contribution -0.343 -0.211 0.395 0.564 sum 2.723 -17.997 -8.242 19.981 Atomic orbital electron populations 1.23773 0.95797 1.01610 1.00739 1.23506 0.96688 0.99116 0.99713 1.20398 0.93290 0.95451 0.88960 1.57434 1.27020 1.78514 1.18382 1.19118 0.96392 0.95201 0.75807 1.21447 1.43756 0.91716 0.99934 0.92046 1.24910 0.94949 0.98616 0.95396 1.69914 1.43690 1.35689 1.04128 0.86589 0.78724 0.85250 0.77089 1.20193 1.21241 1.19942 1.02265 0.73690 0.73220 0.73434 1.93611 1.69088 1.72237 1.57847 1.93500 1.83946 1.85428 1.33515 1.31412 1.16068 1.27780 1.00026 1.20838 0.91333 0.95161 0.95450 1.20575 1.05010 0.91674 0.98147 1.19128 0.99580 0.83619 0.92632 1.18842 1.06643 0.90704 0.86008 1.20108 0.95118 0.88865 0.99281 1.86332 1.78816 1.19765 1.37035 1.23636 1.00848 0.82619 0.98503 1.23696 0.99628 0.94460 0.87918 1.86332 1.76270 1.13307 1.45971 0.89061 0.88174 0.88043 0.88771 0.89306 0.94327 0.94277 0.92654 0.82815 0.83879 0.83261 0.85904 0.90433 0.90151 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 14.32 29.01 0.42 -2.09 16 2 C -0.17 -2.59 9.84 -36.03 -0.35 -2.95 16 3 C 0.14 2.51 6.12 -5.19 -0.03 2.48 16 4 N -0.97 -19.90 2.75 -116.94 -0.32 -20.22 16 5 C 0.26 6.26 5.10 -5.19 -0.03 6.23 16 6 C -0.53 -14.48 9.38 -34.44 -0.32 -14.80 16 7 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 S 2.69 53.37 5.65 -107.50 -0.61 52.76 16 15 O -0.94 -21.75 16.24 -57.17 -0.93 -22.68 16 16 O -0.97 -19.77 15.83 -57.17 -0.91 -20.68 16 17 C -0.67 -11.27 5.97 -39.59 -0.24 -11.51 16 18 C -0.01 -0.14 9.51 -39.59 -0.38 -0.51 16 19 C -0.13 -1.88 9.96 -39.42 -0.39 -2.27 16 20 C 0.10 1.33 6.49 -39.14 -0.25 1.07 16 21 C 0.02 0.33 6.49 -39.14 -0.25 0.08 16 22 C -0.01 -0.22 8.80 -39.43 -0.35 -0.56 16 23 O -0.30 -3.74 10.42 -32.85 -0.34 -4.09 16 24 C 0.02 0.15 7.26 37.40 0.27 0.42 16 25 C 0.02 0.14 7.26 37.40 0.27 0.41 16 26 O -0.30 -3.57 10.42 -32.89 -0.34 -3.92 16 27 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.10 1.35 7.84 -52.48 -0.41 0.94 16 29 H 0.10 1.47 7.41 -52.49 -0.39 1.08 16 30 H 0.09 1.65 7.76 -51.93 -0.40 1.24 16 31 H 0.09 1.43 6.91 -51.93 -0.36 1.07 16 32 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 33 H 0.04 1.00 7.61 -51.93 -0.40 0.61 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.15 2.40 7.61 -52.49 -0.40 2.00 16 36 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.15 2.15 7.61 -52.49 -0.40 1.75 16 38 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -33.72 363.10 -9.25 -42.97 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.26 Total: 1.14 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -1.74 Total: -22.33 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.41 Total: -45.15 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -2.52 Total: -51.36 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 53.37 SS G_CDS: -0.61 Total: 52.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.72 -9.25 -42.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298735687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.604 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds