Wall clock time and date at job start Tue Mar 31 2020 23:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99991 * 2 1 4 4 N 1.46502 * 109.47184 * 125.00364 * 3 2 1 5 5 C 1.46502 * 119.99512 * 275.00066 * 4 3 2 6 6 C 1.50702 * 109.46907 * 274.99301 * 5 4 3 7 7 H 1.08003 * 120.00006 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99886 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99884 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99927 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47411 * 60.00411 * 10 8 6 12 12 H 1.48504 * 109.47194 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47296 * 300.00344 * 10 8 6 14 14 S 1.65595 * 120.00266 * 94.99376 * 4 3 2 15 15 O 1.42103 * 106.40205 * 156.45833 * 14 4 3 16 16 O 1.42104 * 106.40272 * 23.54356 * 14 4 3 17 17 C 1.76196 * 107.22222 * 270.00601 * 14 4 3 18 18 C 1.38259 * 119.93869 * 269.72518 * 17 14 4 19 19 C 1.38202 * 120.11001 * 180.32964 * 18 17 14 20 20 C 1.38697 * 120.06460 * 0.02562 * 19 18 17 21 21 C 1.38974 * 119.82631 * 359.90097 * 20 19 18 22 22 C 1.38195 * 119.94838 * 89.99794 * 17 14 4 23 23 O 1.36101 * 120.78519 * 180.26783 * 21 20 19 24 24 C 1.43172 * 116.71998 * 342.81351 * 23 21 20 25 25 C 1.53465 * 108.25008 * 46.16016 * 24 23 21 26 26 O 1.36112 * 119.39560 * 179.81351 * 20 19 18 27 27 H 1.07995 * 120.00391 * 180.02562 * 1 2 3 28 28 H 1.08008 * 119.99488 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99867 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47275 * 4.99759 * 3 2 1 31 31 H 1.09000 * 109.46688 * 244.99927 * 3 2 1 32 32 H 1.09002 * 109.47237 * 34.99709 * 5 4 3 33 33 H 1.09006 * 109.46525 * 154.99804 * 5 4 3 34 34 H 0.97002 * 119.99702 * 179.97438 * 9 8 6 35 35 H 1.07997 * 119.94717 * 0.30575 * 18 17 14 36 36 H 1.07998 * 119.96268 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.96192 * 359.71362 * 22 17 14 38 38 H 1.09002 * 109.71343 * 165.85481 * 24 23 21 39 39 H 1.09004 * 109.70495 * 286.47553 * 24 23 21 40 40 H 1.08997 * 109.70703 * 59.95268 * 25 24 23 41 41 H 1.09004 * 109.71370 * 180.58219 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5285 1.7621 2.4522 6 6 2.5993 3.2646 2.5450 7 1 2.9549 3.8413 1.7039 8 6 2.2091 3.9029 3.7031 9 7 1.7755 3.2005 4.7270 10 14 2.2961 5.7653 3.8177 11 1 1.4340 6.3668 2.7688 12 1 1.8245 6.2014 5.1567 13 1 3.6995 6.2085 3.6192 14 16 4.5713 0.8758 0.9173 15 8 5.3148 1.5045 1.9522 16 8 4.8568 1.0543 -0.4633 17 6 4.6594 -0.8571 1.2234 18 6 4.9191 -1.3200 2.5001 19 6 4.9958 -2.6784 2.7429 20 6 4.8128 -3.5810 1.7058 21 6 4.5503 -3.1158 0.4228 22 6 4.4745 -1.7513 0.1860 23 8 4.3622 -3.9842 -0.6081 24 6 4.8119 -5.3286 -0.4076 25 6 4.3364 -5.7931 0.9756 26 8 4.8950 -4.9157 1.9595 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4983 1.4371 2.5982 33 1 3.1614 1.3203 3.2220 34 1 1.5013 3.6496 5.5419 35 1 5.0627 -0.6189 3.3089 36 1 5.1983 -3.0373 3.7411 37 1 4.2715 -1.3871 -0.8102 38 1 4.3913 -5.9757 -1.1773 39 1 5.9004 -5.3626 -0.4525 40 1 3.2481 -5.7530 1.0228 41 1 4.6755 -6.8130 1.1576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298735687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:58 Heat of formation + Delta-G solvation = -111.496653 kcal Electronic energy + Delta-G solvation = -27965.850451 eV Core-core repulsion = 23938.732833 eV Total energy + Delta-G solvation = -4027.117618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40854 -38.93733 -38.45671 -38.30791 -37.90104 -36.86865 -34.98466 -33.52242 -32.41196 -32.00106 -29.69168 -29.31539 -26.54270 -26.02541 -24.30975 -24.16448 -22.46514 -21.00382 -20.27343 -19.66366 -18.97241 -18.48828 -18.37995 -18.18494 -17.45409 -17.22121 -16.59575 -16.32960 -16.07123 -15.91609 -15.54084 -15.29034 -15.09759 -15.02817 -14.71374 -14.56549 -14.21944 -13.96176 -13.78483 -13.38164 -13.23426 -13.07210 -13.03577 -12.92777 -12.69236 -12.46060 -12.35883 -12.27292 -12.10552 -12.03964 -11.88401 -11.66285 -11.56664 -10.54902 -10.29415 -10.03385 -9.80241 -9.45813 -8.15766 -6.27005 -0.64253 -0.34079 0.05234 1.37980 1.43095 1.46496 1.53332 1.78872 2.04440 2.13461 2.38840 2.45800 2.82458 3.08112 3.15671 3.36226 3.51678 3.84789 3.92675 3.94415 3.99538 4.06545 4.17304 4.22896 4.38828 4.43527 4.52671 4.61499 4.69206 4.82128 4.82999 4.94340 4.96990 5.08610 5.24640 5.29354 5.46726 5.68527 5.69434 5.75167 5.82667 6.01687 6.14561 6.19272 6.80596 7.41301 8.91781 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.003657 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.414612 B = 7655.676380 C = 7954.337258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.187 4.187 3 C 0.139 3.861 4 N -0.981 5.981 5 C 0.273 3.727 6 C -0.548 4.548 7 H 0.055 0.945 8 C 0.015 3.985 9 N -0.923 5.923 10 Si 0.954 3.046 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.277 1.277 14 S 2.695 3.305 15 O -0.981 6.981 16 O -0.984 6.984 17 C -0.674 4.674 18 C -0.024 4.024 19 C -0.134 4.134 20 C 0.103 3.897 21 C 0.027 3.973 22 C -0.023 4.023 23 O -0.316 6.316 24 C 0.011 3.989 25 C 0.011 3.989 26 O -0.310 6.310 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.029 0.971 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.146 0.854 36 H 0.167 0.833 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -20.650 -9.450 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.207 4.207 3 C 0.014 3.986 4 N -0.819 5.819 5 C 0.150 3.850 6 C -0.587 4.587 7 H 0.073 0.927 8 C -0.184 4.184 9 N -0.563 5.563 10 Si 0.779 3.221 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.202 1.202 14 S 2.787 3.213 15 O -0.972 6.972 16 O -0.974 6.974 17 C -0.762 4.762 18 C -0.044 4.044 19 C -0.153 4.153 20 C 0.057 3.943 21 C -0.019 4.019 22 C -0.043 4.043 23 O -0.231 6.231 24 C -0.064 4.064 25 C -0.064 4.064 26 O -0.224 6.224 27 H 0.133 0.867 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.184 0.816 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.547 -20.156 -9.524 22.437 hybrid contribution -0.188 0.262 0.576 0.660 sum 2.359 -19.894 -8.947 21.940 Atomic orbital electron populations 1.24008 0.95332 1.02837 0.98222 1.23378 0.97157 0.98191 1.01945 1.20564 0.93080 0.96739 0.88172 1.57283 1.27524 1.79342 1.17703 1.18652 0.95337 0.93669 0.77343 1.21801 1.43619 0.93382 0.99943 0.92678 1.25690 0.94641 1.02982 0.95124 1.70007 1.44370 1.37334 1.04558 0.85678 0.78593 0.80172 0.77703 1.18894 1.20305 1.20236 1.01560 0.72994 0.74167 0.72541 1.93550 1.70211 1.74387 1.59016 1.93470 1.83965 1.86323 1.33690 1.30706 1.18938 1.25356 1.01221 1.20866 0.92339 0.96276 0.94901 1.20767 1.04253 0.90798 0.99504 1.19193 0.98089 0.84832 0.92208 1.18808 1.05708 0.90622 0.86777 1.20157 0.95496 0.89616 0.98997 1.86321 1.78801 1.21528 1.36463 1.24086 1.01650 0.80730 0.99908 1.24138 1.00058 0.95301 0.86863 1.86335 1.76193 1.12318 1.47587 0.86650 0.88078 0.87276 0.89469 0.88397 0.95298 0.96133 0.92431 0.83638 0.81598 0.82751 0.82160 0.89795 0.89621 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 14.32 67.78 0.97 -3.39 16 2 C -0.19 -5.61 9.84 25.64 0.25 -5.36 16 3 C 0.14 4.93 6.12 85.63 0.52 5.45 16 4 N -0.98 -41.54 2.75 -523.89 -1.44 -42.98 16 5 C 0.27 13.89 5.10 85.63 0.44 14.32 16 6 C -0.55 -30.89 9.38 25.60 0.24 -30.65 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 8 C 0.02 0.86 5.46 84.65 0.46 1.32 16 9 N -0.92 -53.87 13.29 21.45 0.28 -53.58 16 10 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 11 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 S 2.69 111.57 5.65 -56.49 -0.32 111.25 16 15 O -0.98 -48.05 16.24 -128.00 -2.08 -50.13 16 16 O -0.98 -41.09 15.83 -128.00 -2.03 -43.11 16 17 C -0.67 -23.20 5.97 22.26 0.13 -23.07 16 18 C -0.02 -0.79 9.51 22.27 0.21 -0.57 16 19 C -0.13 -3.62 9.96 22.37 0.22 -3.39 16 20 C 0.10 2.66 6.49 22.56 0.15 2.80 16 21 C 0.03 0.72 6.49 22.56 0.15 0.87 16 22 C -0.02 -0.69 8.80 22.37 0.20 -0.50 16 23 O -0.32 -6.95 10.42 -82.46 -0.86 -7.81 16 24 C 0.01 0.12 7.26 72.14 0.52 0.65 16 25 C 0.01 0.12 7.26 72.14 0.52 0.64 16 26 O -0.31 -6.33 10.42 -82.60 -0.86 -7.19 16 27 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 28 H 0.10 2.62 7.84 -2.91 -0.02 2.60 16 29 H 0.11 3.10 7.41 -2.91 -0.02 3.08 16 30 H 0.09 3.14 7.76 -2.39 -0.02 3.12 16 31 H 0.10 3.21 6.91 -2.39 -0.02 3.20 16 32 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 33 H 0.02 1.12 7.61 -2.38 -0.02 1.10 16 34 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.15 4.85 7.61 -2.91 -0.02 4.82 16 36 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 37 H 0.15 4.41 7.61 -2.91 -0.02 4.39 16 38 H 0.16 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -73.94 363.10 0.76 -73.18 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 1.04 Total: 14.73 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 4.99 Total: -40.88 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -1.16 Total: -96.56 kcal Atomic # 8 Polarization: -102.41 SS G_CDS: -5.83 Total: -108.24 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 111.57 SS G_CDS: -0.32 Total: 111.25 kcal Total: -73.94 0.76 -73.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298735687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.316 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds