Wall clock time and date at job start Tue Mar 31 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86805 * 120.00158 * 2 1 4 4 H 1.48499 * 109.47244 * 240.00089 * 3 2 1 5 5 H 1.48506 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47237 * 119.99672 * 3 2 1 7 7 C 1.39948 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99980 * 197.85446 * 7 2 1 9 9 C 1.41392 * 119.99567 * 17.85276 * 7 2 1 10 10 C 1.40713 * 120.24505 * 24.38992 * 9 7 2 11 11 C 1.37626 * 119.74491 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24526 * 0.02562 * 11 10 9 13 13 S 1.76198 * 119.74660 * 179.97438 * 12 11 10 14 14 O 1.42097 * 106.40509 * 336.46319 * 13 12 11 15 15 O 1.42107 * 106.40192 * 203.54206 * 13 12 11 16 16 N 1.65606 * 107.21819 * 90.00552 * 13 12 11 17 17 C 1.46498 * 120.00122 * 64.99824 * 16 13 12 18 18 H 1.09001 * 109.46887 * 335.00164 * 17 16 13 19 19 C 1.52999 * 109.47020 * 215.00306 * 17 16 13 20 20 C 1.52995 * 109.46985 * 65.00163 * 19 17 16 21 21 C 1.53006 * 117.49538 * 243.61724 * 20 19 17 22 22 C 1.53001 * 60.00191 * 252.51411 * 21 20 19 23 23 C 1.50699 * 109.46971 * 95.00143 * 17 16 13 24 24 O 1.20820 * 120.00276 * 359.97438 * 23 17 16 25 25 O 1.34228 * 119.99699 * 179.72555 * 23 17 16 26 26 C 1.38635 * 120.50595 * 0.25500 * 12 11 10 27 27 C 1.37627 * 120.24337 * 359.44924 * 26 12 11 28 28 H 0.96999 * 119.99974 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.13009 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.87607 * 180.02562 * 11 10 9 31 31 H 0.96999 * 119.99507 * 244.99973 * 16 13 12 32 32 H 1.09003 * 109.46726 * 185.00094 * 19 17 16 33 33 H 1.08993 * 109.46877 * 304.99775 * 19 17 16 34 34 H 1.08992 * 115.55553 * 29.32790 * 20 19 17 35 35 H 1.08998 * 117.50028 * 0.02562 * 21 20 19 36 36 H 1.08998 * 117.49519 * 145.02114 * 21 20 19 37 37 H 1.09003 * 117.49802 * 252.51629 * 22 21 20 38 38 H 1.08993 * 117.51645 * 107.48379 * 22 21 20 39 39 H 0.96700 * 117.00033 * 180.27394 * 25 23 17 40 40 H 1.07994 * 119.87648 * 179.69561 * 26 12 11 41 41 H 1.07994 * 120.12568 * 180.27514 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3521 -2.4068 -0.3765 10 6 0.2208 -2.3616 -1.2121 11 6 -0.4100 -3.5308 -1.5712 12 6 0.0648 -4.7498 -1.1124 13 16 -0.7533 -6.2387 -1.5798 14 8 -2.0859 -5.8762 -1.9146 15 8 -0.4367 -7.2006 -0.5828 16 7 -0.0464 -6.7675 -2.9809 17 6 1.3565 -7.1893 -2.9797 18 1 1.8827 -6.6988 -2.1606 19 6 2.0070 -6.8009 -4.3089 20 6 2.0429 -5.2764 -4.4328 21 6 1.2365 -4.6407 -5.5672 22 6 2.7640 -4.6829 -5.6448 23 6 1.4315 -8.6838 -2.8014 24 8 0.4173 -9.3302 -2.6867 25 8 2.6250 -9.2975 -2.7752 26 6 1.1750 -4.8059 -0.2840 27 6 1.8252 -3.6498 0.0830 28 1 -0.4850 0.8400 0.0004 29 1 -0.1509 -1.4130 -1.5703 30 1 -1.2781 -3.4986 -2.2128 31 1 -0.5613 -6.7979 -3.8024 32 1 3.0238 -7.1923 -4.3439 33 1 1.4283 -7.2189 -5.1324 34 1 2.1061 -4.7295 -3.4921 35 1 0.6802 -5.3086 -6.2249 36 1 0.7690 -3.6755 -5.3727 37 1 3.3013 -3.7454 -5.5014 38 1 3.2131 -5.3785 -6.3536 39 1 2.6225 -10.2579 -2.6627 40 1 1.5333 -5.7607 0.0715 41 1 2.6925 -3.6960 0.7248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314316559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:41 Heat of formation + Delta-G solvation = -134.039519 kcal Electronic energy + Delta-G solvation = -27950.030455 eV Core-core repulsion = 23921.935305 eV Total energy + Delta-G solvation = -4028.095150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34786 -37.85773 -37.59042 -36.53114 -36.16032 -35.13208 -34.89069 -34.08893 -30.31043 -29.89676 -29.52218 -25.87178 -25.45929 -22.29733 -21.57002 -21.45499 -21.16898 -20.55292 -19.05534 -18.07353 -17.67358 -17.21058 -17.09530 -16.21913 -16.13289 -15.63097 -15.46177 -14.88605 -14.39847 -14.19127 -14.14187 -13.51475 -13.41168 -13.22869 -13.04298 -12.48153 -12.24558 -12.01933 -11.80479 -11.53851 -11.47189 -11.45317 -11.43252 -11.39187 -11.36232 -11.30545 -11.25473 -10.92711 -10.74818 -10.48232 -10.29303 -9.91379 -9.80900 -9.70932 -9.53397 -9.26309 -8.01764 -7.76122 -7.18516 -4.85112 1.14456 2.20601 2.22183 2.84085 2.85462 2.87695 2.90512 2.95429 3.58488 3.62967 3.87723 4.19008 4.41970 4.55883 4.76895 4.89941 5.02513 5.10964 5.17734 5.23357 5.33054 5.47572 5.65433 5.67884 5.73091 5.95697 6.00263 6.00719 6.09466 6.21596 6.40098 6.48361 6.63874 6.66018 6.85994 6.98563 7.13866 7.28617 7.36971 7.58794 7.71648 7.90507 7.91738 8.27108 8.46255 8.59719 9.72711 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013796 B = 0.003937 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.130877 B = 7111.006998 C = 7888.364786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.087 0.913 9 C 0.140 3.860 10 C -0.183 4.183 11 C -0.010 4.010 12 C -0.788 4.788 13 S 2.688 3.312 14 O -0.977 6.977 15 O -0.978 6.978 16 N -1.099 6.099 17 C 0.177 3.823 18 H 0.128 0.872 19 C -0.085 4.085 20 C -0.150 4.150 21 C -0.178 4.178 22 C -0.180 4.180 23 C 0.461 3.539 24 O -0.497 6.497 25 O -0.517 6.517 26 C -0.004 4.004 27 C -0.235 4.235 28 H 0.291 0.709 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.416 0.584 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.407 0.593 40 H 0.102 0.898 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.505 -6.944 -9.581 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.203 4.203 11 C -0.030 4.030 12 C -0.884 4.884 13 S 2.787 3.213 14 O -0.968 6.968 15 O -0.968 6.968 16 N -0.854 5.854 17 C 0.067 3.933 18 H 0.145 0.855 19 C -0.124 4.124 20 C -0.168 4.168 21 C -0.215 4.215 22 C -0.217 4.217 23 C 0.300 3.700 24 O -0.383 6.383 25 O -0.328 6.328 26 C -0.024 4.024 27 C -0.256 4.256 28 H 0.102 0.898 29 H 0.140 0.860 30 H 0.121 0.879 31 H 0.250 0.750 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.266 0.734 40 H 0.120 0.880 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.367 -7.020 -8.994 12.609 hybrid contribution 0.471 0.666 -0.161 0.832 sum 5.838 -6.353 -9.155 12.581 Atomic orbital electron populations 1.69812 1.07930 1.30601 1.30099 1.26142 0.94876 1.02143 0.91872 0.86204 0.80192 0.79177 0.80444 1.18337 1.19877 1.18533 1.19927 0.98529 0.91252 1.36387 0.89446 1.17835 0.90089 0.92074 0.86358 1.21326 0.99789 0.96877 1.02326 1.20223 0.95777 0.91625 0.95397 1.29082 1.18701 1.15261 1.25354 1.01491 0.73299 0.74372 0.72116 1.93504 1.34699 1.84892 1.83727 1.93506 1.85064 1.61026 1.57240 1.55741 1.19105 1.80936 1.29590 1.20094 0.84193 0.86585 1.02473 0.85502 1.21410 1.01510 0.95054 0.94419 1.22274 1.05215 0.94008 0.95265 1.23025 0.93773 1.03022 1.01638 1.22942 0.95100 1.02872 1.00792 1.24258 0.80865 0.92453 0.72434 1.90713 1.36538 1.66850 1.44167 1.84528 1.34674 1.28556 1.85071 1.20165 0.92068 0.97411 0.92753 1.21008 1.04151 0.92737 1.07669 0.89809 0.86048 0.87888 0.75024 0.88926 0.90718 0.86202 0.89091 0.88496 0.88706 0.89151 0.73406 0.87952 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.78 10.95 55.55 0.61 -17.17 16 2 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 3 Si 0.92 16.46 29.60 -169.99 -5.03 11.43 16 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 7 C -0.43 -10.18 9.05 -37.74 -0.34 -10.52 16 8 H 0.09 1.93 7.91 -52.49 -0.42 1.51 16 9 C 0.14 3.36 5.57 -106.83 -0.60 2.77 16 10 C -0.18 -4.34 8.70 -38.87 -0.34 -4.68 16 11 C -0.01 -0.22 9.49 -39.66 -0.38 -0.59 16 12 C -0.79 -16.44 5.84 -39.29 -0.23 -16.67 16 13 S 2.69 52.22 5.65 -107.50 -0.61 51.62 16 14 O -0.98 -21.37 17.26 -57.17 -0.99 -22.35 16 15 O -0.98 -21.41 17.01 -57.17 -0.97 -22.38 16 16 N -1.10 -16.26 4.68 -5.88 -0.03 -16.29 16 17 C 0.18 2.30 2.63 -69.08 -0.18 2.12 16 18 H 0.13 1.66 7.23 -51.93 -0.38 1.28 16 19 C -0.09 -0.86 5.06 -26.73 -0.14 -1.00 16 20 C -0.15 -1.71 5.48 -90.62 -0.50 -2.21 16 21 C -0.18 -1.94 10.18 -26.73 -0.27 -2.21 16 22 C -0.18 -1.83 10.25 -26.73 -0.27 -2.10 16 23 C 0.46 6.28 7.70 36.01 0.28 6.55 16 24 O -0.50 -8.47 17.19 -18.75 -0.32 -8.79 16 25 O -0.52 -5.19 13.22 -39.25 -0.52 -5.71 16 26 C 0.00 -0.08 8.88 -39.66 -0.35 -0.43 16 27 C -0.24 -5.22 9.80 -38.87 -0.38 -5.60 16 28 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 29 H 0.12 2.94 6.16 -52.49 -0.32 2.62 16 30 H 0.10 2.13 7.60 -52.49 -0.40 1.73 16 31 H 0.42 5.25 8.84 -34.47 -0.30 4.95 16 32 H 0.09 0.80 7.99 -51.93 -0.41 0.39 16 33 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 34 H 0.12 1.65 8.07 -51.93 -0.42 1.23 16 35 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.41 2.41 9.10 45.56 0.41 2.82 16 40 H 0.10 1.93 7.59 -52.49 -0.40 1.54 16 41 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -31.80 367.81 -10.39 -42.19 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -4.29 Total: 14.97 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -3.79 Total: -33.04 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.58 Total: -33.46 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -2.80 Total: -59.24 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -5.03 Total: 11.43 kcal Atomic # 16 Polarization: 52.22 SS G_CDS: -0.61 Total: 51.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.80 -10.39 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314316559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.852 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds