Wall clock time and date at job start Tue Mar 31 2020 22:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86805 * 120.00158 * 2 1 4 4 H 1.48499 * 109.47244 * 240.00089 * 3 2 1 5 5 H 1.48506 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47237 * 119.99672 * 3 2 1 7 7 C 1.39948 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99980 * 197.85446 * 7 2 1 9 9 C 1.41392 * 119.99567 * 17.85276 * 7 2 1 10 10 C 1.40713 * 120.24505 * 24.38992 * 9 7 2 11 11 C 1.37626 * 119.74491 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24526 * 0.02562 * 11 10 9 13 13 S 1.76198 * 119.74660 * 179.97438 * 12 11 10 14 14 O 1.42097 * 106.40509 * 336.46319 * 13 12 11 15 15 O 1.42107 * 106.40192 * 203.54206 * 13 12 11 16 16 N 1.65606 * 107.21819 * 90.00552 * 13 12 11 17 17 C 1.46498 * 120.00122 * 64.99824 * 16 13 12 18 18 H 1.09001 * 109.46887 * 335.00164 * 17 16 13 19 19 C 1.52999 * 109.47020 * 215.00306 * 17 16 13 20 20 C 1.52995 * 109.46985 * 65.00163 * 19 17 16 21 21 C 1.53006 * 117.49538 * 243.61724 * 20 19 17 22 22 C 1.53001 * 60.00191 * 252.51411 * 21 20 19 23 23 C 1.50699 * 109.46971 * 95.00143 * 17 16 13 24 24 O 1.20820 * 120.00276 * 359.97438 * 23 17 16 25 25 O 1.34228 * 119.99699 * 179.72555 * 23 17 16 26 26 C 1.38635 * 120.50595 * 0.25500 * 12 11 10 27 27 C 1.37627 * 120.24337 * 359.44924 * 26 12 11 28 28 H 0.96999 * 119.99974 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.13009 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.87607 * 180.02562 * 11 10 9 31 31 H 0.96999 * 119.99507 * 244.99973 * 16 13 12 32 32 H 1.09003 * 109.46726 * 185.00094 * 19 17 16 33 33 H 1.08993 * 109.46877 * 304.99775 * 19 17 16 34 34 H 1.08992 * 115.55553 * 29.32790 * 20 19 17 35 35 H 1.08998 * 117.50028 * 0.02562 * 21 20 19 36 36 H 1.08998 * 117.49519 * 145.02114 * 21 20 19 37 37 H 1.09003 * 117.49802 * 252.51629 * 22 21 20 38 38 H 1.08993 * 117.51645 * 107.48379 * 22 21 20 39 39 H 0.96700 * 117.00033 * 180.27394 * 25 23 17 40 40 H 1.07994 * 119.87648 * 179.69561 * 26 12 11 41 41 H 1.07994 * 120.12568 * 180.27514 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3521 -2.4068 -0.3765 10 6 0.2208 -2.3616 -1.2121 11 6 -0.4100 -3.5308 -1.5712 12 6 0.0648 -4.7498 -1.1124 13 16 -0.7533 -6.2387 -1.5798 14 8 -2.0859 -5.8762 -1.9146 15 8 -0.4367 -7.2006 -0.5828 16 7 -0.0464 -6.7675 -2.9809 17 6 1.3565 -7.1893 -2.9797 18 1 1.8827 -6.6988 -2.1606 19 6 2.0070 -6.8009 -4.3089 20 6 2.0429 -5.2764 -4.4328 21 6 1.2365 -4.6407 -5.5672 22 6 2.7640 -4.6829 -5.6448 23 6 1.4315 -8.6838 -2.8014 24 8 0.4173 -9.3302 -2.6867 25 8 2.6250 -9.2975 -2.7752 26 6 1.1750 -4.8059 -0.2840 27 6 1.8252 -3.6498 0.0830 28 1 -0.4850 0.8400 0.0004 29 1 -0.1509 -1.4130 -1.5703 30 1 -1.2781 -3.4986 -2.2128 31 1 -0.5613 -6.7979 -3.8024 32 1 3.0238 -7.1923 -4.3439 33 1 1.4283 -7.2189 -5.1324 34 1 2.1061 -4.7295 -3.4921 35 1 0.6802 -5.3086 -6.2249 36 1 0.7690 -3.6755 -5.3727 37 1 3.3013 -3.7454 -5.5014 38 1 3.2131 -5.3785 -6.3536 39 1 2.6225 -10.2579 -2.6627 40 1 1.5333 -5.7607 0.0715 41 1 2.6925 -3.6960 0.7248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314316559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:40 Heat of formation + Delta-G solvation = -155.730719 kcal Electronic energy + Delta-G solvation = -27950.971056 eV Core-core repulsion = 23921.935305 eV Total energy + Delta-G solvation = -4029.035751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38744 -39.38996 -38.71244 -38.18170 -37.16149 -36.82161 -36.01085 -35.78715 -32.05948 -31.28915 -30.95058 -27.61516 -26.43144 -23.28885 -23.12856 -22.99822 -22.39853 -21.47734 -20.50090 -19.41954 -19.11842 -18.72726 -18.39843 -17.64082 -17.26126 -17.07946 -16.69595 -16.21008 -15.82202 -15.54300 -15.14514 -15.05119 -14.94381 -14.47539 -14.11066 -14.04478 -13.94732 -13.53421 -13.15019 -13.09981 -13.01400 -12.94162 -12.88066 -12.75894 -12.54776 -12.46779 -12.34099 -12.21967 -12.05253 -11.86102 -11.54268 -11.40923 -11.20641 -11.08685 -10.74239 -10.56161 -9.78017 -9.52842 -8.86173 -6.63428 -0.41551 0.49160 1.08018 1.17956 1.37001 1.44882 1.51068 1.92954 2.11950 2.24553 2.53126 2.90875 3.02166 3.50337 3.55003 3.57568 3.86831 4.00232 4.10504 4.22781 4.31477 4.33508 4.34645 4.52558 4.75407 4.88544 4.90276 4.92034 4.95968 5.03681 5.12544 5.16595 5.24755 5.38985 5.49652 5.54003 5.61044 5.62534 5.78549 5.94299 6.02868 6.16941 6.51088 6.70121 6.82773 7.00738 8.08388 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013796 B = 0.003937 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.130877 B = 7111.006998 C = 7888.364786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.463 4.463 8 H 0.094 0.906 9 C 0.115 3.885 10 C -0.203 4.203 11 C -0.013 4.013 12 C -0.788 4.788 13 S 2.715 3.285 14 O -1.003 7.003 15 O -1.000 7.000 16 N -1.087 6.087 17 C 0.167 3.833 18 H 0.126 0.874 19 C -0.073 4.073 20 C -0.160 4.160 21 C -0.185 4.185 22 C -0.167 4.167 23 C 0.469 3.531 24 O -0.536 6.536 25 O -0.503 6.503 26 C -0.003 4.003 27 C -0.248 4.248 28 H 0.298 0.702 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.428 0.572 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.428 0.572 40 H 0.124 0.876 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 -7.725 -10.755 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.112 0.888 9 C 0.112 3.888 10 C -0.224 4.224 11 C -0.033 4.033 12 C -0.883 4.883 13 S 2.812 3.188 14 O -0.994 6.994 15 O -0.990 6.990 16 N -0.846 5.846 17 C 0.057 3.943 18 H 0.143 0.857 19 C -0.111 4.111 20 C -0.178 4.178 21 C -0.222 4.222 22 C -0.204 4.204 23 C 0.309 3.691 24 O -0.425 6.425 25 O -0.316 6.316 26 C -0.023 4.023 27 C -0.269 4.269 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.265 0.735 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.133 0.867 39 H 0.290 0.710 40 H 0.142 0.858 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.983 -7.809 -10.164 14.596 hybrid contribution 0.003 0.764 0.167 0.782 sum 6.985 -7.045 -9.997 14.084 Atomic orbital electron populations 1.69859 1.09460 1.31907 1.30833 1.27001 0.95469 1.05216 0.90712 0.85129 0.78795 0.74686 0.80559 1.17860 1.19185 1.17940 1.20229 0.99063 0.92071 1.37627 0.88793 1.18162 0.90553 0.93235 0.86894 1.21307 1.00722 0.96916 1.03433 1.20357 0.95862 0.91753 0.95346 1.29360 1.18290 1.15727 1.24915 1.00565 0.72413 0.73386 0.72392 1.93463 1.36486 1.85164 1.84280 1.93477 1.85288 1.61233 1.59020 1.55216 1.20321 1.80446 1.28607 1.20389 0.82835 0.86727 1.04326 0.85665 1.21405 1.02712 0.93907 0.93120 1.22182 1.06445 0.94769 0.94452 1.23085 0.94651 1.02594 1.01893 1.23006 0.94438 1.02874 1.00082 1.24175 0.81065 0.92433 0.71448 1.90713 1.37945 1.67657 1.46203 1.84471 1.32535 1.30419 1.84144 1.20413 0.91733 0.97972 0.92141 1.21220 1.04908 0.92647 1.08096 0.89097 0.87347 0.87122 0.73493 0.86662 0.88841 0.89095 0.87237 0.90350 0.89434 0.86747 0.70982 0.85812 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.16 10.95 21.83 0.24 -37.92 16 2 C 0.04 1.61 5.14 85.26 0.44 2.04 16 3 Si 0.99 33.57 29.60 68.60 2.03 35.60 16 4 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 5 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 6 H -0.26 -8.38 7.11 99.48 0.71 -7.68 16 7 C -0.46 -22.21 9.05 23.46 0.21 -22.00 16 8 H 0.09 4.20 7.91 -2.91 -0.02 4.18 16 9 C 0.12 5.69 5.57 -21.29 -0.12 5.57 16 10 C -0.20 -10.03 8.70 22.73 0.20 -9.83 16 11 C -0.01 -0.59 9.49 22.22 0.21 -0.38 16 12 C -0.79 -33.08 5.84 22.46 0.13 -32.95 16 13 S 2.72 104.31 5.65 -56.49 -0.32 103.99 16 14 O -1.00 -43.71 17.26 -128.00 -2.21 -45.92 16 15 O -1.00 -43.06 17.01 -128.00 -2.18 -45.23 16 16 N -1.09 -30.84 4.68 -172.53 -0.81 -31.65 16 17 C 0.17 4.02 2.63 44.25 0.12 4.14 16 18 H 0.13 3.09 7.23 -2.39 -0.02 3.07 16 19 C -0.07 -1.27 5.06 30.59 0.15 -1.11 16 20 C -0.16 -3.44 5.48 -10.79 -0.06 -3.50 16 21 C -0.19 -3.82 10.18 30.60 0.31 -3.51 16 22 C -0.17 -3.07 10.25 30.60 0.31 -2.76 16 23 C 0.47 11.65 7.70 71.24 0.55 12.20 16 24 O -0.54 -17.37 17.19 21.98 0.38 -17.00 16 25 O -0.50 -8.49 13.22 -51.40 -0.68 -9.17 16 26 C 0.00 -0.11 8.88 22.22 0.20 0.08 16 27 C -0.25 -11.17 9.80 22.73 0.22 -10.95 16 28 H 0.30 12.78 8.30 -92.71 -0.77 12.01 16 29 H 0.11 5.53 6.16 -2.91 -0.02 5.52 16 30 H 0.11 4.71 7.60 -2.91 -0.02 4.69 16 31 H 0.43 10.16 8.84 -96.75 -0.85 9.30 16 32 H 0.12 1.55 7.99 -2.39 -0.02 1.53 16 33 H 0.09 1.32 7.87 -2.39 -0.02 1.30 16 34 H 0.09 2.52 8.07 -2.39 -0.02 2.50 16 35 H 0.11 1.83 8.03 -2.39 -0.02 1.81 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.43 3.65 9.10 -74.06 -0.67 2.98 16 40 H 0.12 4.56 7.59 -2.91 -0.02 4.54 16 41 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -69.31 367.81 -1.11 -70.42 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -0.44 Total: 39.83 kcal Atomic # 6 Polarization: -65.83 SS G_CDS: 2.88 Total: -62.95 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -0.57 Total: -69.56 kcal Atomic # 8 Polarization: -112.62 SS G_CDS: -4.69 Total: -117.31 kcal Atomic # 14 Polarization: 33.57 SS G_CDS: 2.03 Total: 35.60 kcal Atomic # 16 Polarization: 104.31 SS G_CDS: -0.32 Total: 103.99 kcal Total: -69.31 -1.11 -70.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314316559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.316 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds