Wall clock time and date at job start Tue Mar 31 2020 22:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99989 * 2 1 4 4 C 1.53002 * 109.46860 * 124.99949 * 3 2 1 5 5 C 1.52999 * 109.46980 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47027 * 304.99462 * 5 4 3 7 7 N 1.46498 * 109.47215 * 65.00042 * 5 4 3 8 8 S 1.65598 * 120.00149 * 215.00001 * 7 5 4 9 9 O 1.42092 * 106.40451 * 178.53965 * 8 7 5 10 10 O 1.42098 * 106.39944 * 311.46206 * 8 7 5 11 11 C 1.76199 * 107.21856 * 64.99646 * 8 7 5 12 12 C 1.38635 * 119.75368 * 269.73378 * 11 8 7 13 13 C 1.37615 * 120.25331 * 179.72181 * 12 11 8 14 14 C 1.40715 * 119.74091 * 0.56675 * 13 12 11 15 15 C 1.41392 * 120.24560 * 179.68656 * 14 13 12 16 16 H 1.08003 * 120.00399 * 24.40743 * 15 14 13 17 17 C 1.39945 * 120.00309 * 204.41225 * 15 14 13 18 18 N 1.30828 * 119.99779 * 17.85150 * 17 15 14 19 19 Si 1.86804 * 120.00305 * 197.85324 * 17 15 14 20 20 H 1.48497 * 109.46852 * 89.99757 * 19 17 15 21 21 H 1.48498 * 109.47133 * 209.99779 * 19 17 15 22 22 H 1.48496 * 109.46808 * 329.99639 * 19 17 15 23 23 C 1.40721 * 119.51444 * 359.70117 * 14 13 12 24 24 C 1.37621 * 119.74062 * 0.02562 * 23 14 13 25 25 C 1.50699 * 109.46874 * 184.99808 * 5 4 3 26 26 O 1.20822 * 120.00079 * 239.99740 * 25 5 4 27 27 O 1.34235 * 119.99832 * 60.00011 * 25 5 4 28 28 H 1.08001 * 119.99671 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00256 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00055 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46774 * 5.00148 * 3 2 1 32 32 H 1.08997 * 109.46853 * 244.99623 * 3 2 1 33 33 H 1.09007 * 109.47177 * 59.99872 * 4 3 2 34 34 H 1.09003 * 109.47087 * 300.00233 * 4 3 2 35 35 H 0.97004 * 119.99877 * 34.99441 * 7 5 4 36 36 H 1.08005 * 119.87076 * 359.97438 * 12 11 8 37 37 H 1.07995 * 120.13441 * 180.27778 * 13 12 11 38 38 H 0.97005 * 119.99853 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.13264 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.87177 * 179.97438 * 24 23 14 41 41 H 0.96704 * 116.99920 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7996 2.6583 1.1821 6 1 4.2857 2.7976 0.2165 7 7 2.8654 3.7610 1.4222 8 16 3.1012 5.2225 0.6802 9 8 2.0236 6.0560 1.0840 10 8 4.4656 5.5616 0.8863 11 6 2.9088 4.9649 -1.0523 12 6 4.0107 4.6317 -1.8248 13 6 3.8712 4.4226 -3.1778 14 6 2.6062 4.5599 -3.7786 15 6 2.4519 4.3540 -5.1689 16 1 3.1544 3.7322 -5.7040 17 6 1.3890 4.9560 -5.8518 18 7 0.7533 5.9647 -5.3134 19 14 0.8779 4.3192 -7.5319 20 1 -0.1518 3.2619 -7.3682 21 1 0.3178 5.4356 -8.3350 22 1 2.0616 3.7539 -8.2280 23 6 1.4958 4.9039 -2.9856 24 6 1.6578 5.1027 -1.6335 25 6 4.8416 2.6367 2.2705 26 8 4.8075 3.4581 3.1559 27 8 5.8078 1.7049 2.2563 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9313 33 1 3.7400 0.5064 1.0921 34 1 2.4772 1.2355 2.1130 35 1 2.1087 3.6349 2.0159 36 1 4.9816 4.5318 -1.3623 37 1 4.7301 4.1587 -3.7770 38 1 0.0163 6.3818 -5.7866 39 1 0.5204 5.0123 -3.4363 40 1 0.8071 5.3672 -1.0229 41 1 6.4539 1.7314 2.9753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316689107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:03 Heat of formation + Delta-G solvation = -142.955767 kcal Electronic energy + Delta-G solvation = -27715.530832 eV Core-core repulsion = 23687.049045 eV Total energy + Delta-G solvation = -4028.481787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.33726 -37.65541 -37.01573 -36.47684 -36.05199 -35.15001 -34.27208 -34.08883 -30.52443 -30.31525 -29.53446 -27.08123 -25.87799 -22.90752 -21.56624 -21.39813 -21.06737 -19.76523 -19.15868 -18.05912 -17.67707 -17.25357 -17.11154 -16.20763 -15.96918 -15.48913 -15.47325 -15.14469 -14.52523 -14.17106 -14.06149 -13.47695 -13.36026 -13.24050 -12.92750 -12.54700 -12.48214 -12.24243 -11.92729 -11.78538 -11.54780 -11.48814 -11.41087 -11.37538 -11.35007 -11.26689 -10.97996 -10.92774 -10.87071 -10.75954 -10.44401 -9.87536 -9.74525 -9.55302 -9.34765 -9.24746 -8.02451 -7.76768 -7.18988 -4.85459 1.11915 2.18778 2.19260 2.33703 2.83903 2.85507 2.89203 2.90064 2.95779 3.58582 3.63088 4.18277 4.41759 4.58015 4.80504 4.91355 5.08545 5.15341 5.19211 5.32454 5.35967 5.47612 5.67785 5.76695 5.90283 5.98855 6.06589 6.09669 6.24080 6.48054 6.63286 6.65484 6.65703 6.80263 6.85053 6.97971 7.10410 7.28232 7.36403 7.58088 7.71580 7.90252 7.91315 8.26862 8.45960 8.59307 9.72300 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.003934 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.577702 B = 7115.287844 C = 8107.765334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C -0.098 4.098 4 C -0.111 4.111 5 C 0.173 3.827 6 H 0.128 0.872 7 N -1.103 6.103 8 S 2.688 3.312 9 O -0.977 6.977 10 O -0.977 6.977 11 C -0.789 4.789 12 C -0.003 4.003 13 C -0.235 4.235 14 C 0.140 3.860 15 C -0.433 4.433 16 H 0.088 0.912 17 C 0.072 3.928 18 N -0.762 5.762 19 Si 0.917 3.083 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.182 4.182 24 C -0.012 4.012 25 C 0.462 3.538 26 O -0.497 6.497 27 O -0.517 6.517 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.416 0.584 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.290 0.710 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -11.574 6.958 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.168 4.168 3 C -0.135 4.135 4 C -0.150 4.150 5 C 0.063 3.937 6 H 0.145 0.855 7 N -0.857 5.857 8 S 2.787 3.213 9 O -0.968 6.968 10 O -0.967 6.967 11 C -0.885 4.885 12 C -0.023 4.023 13 C -0.255 4.255 14 C 0.136 3.864 15 C -0.460 4.460 16 H 0.106 0.894 17 C -0.151 4.151 18 N -0.384 5.384 19 Si 0.740 3.260 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.202 4.202 24 C -0.032 4.032 25 C 0.301 3.699 26 O -0.383 6.383 27 O -0.328 6.328 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.250 0.750 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.116 -10.326 7.232 12.656 hybrid contribution -0.270 -0.487 -0.648 0.854 sum 0.846 -10.813 6.584 12.688 Atomic orbital electron populations 1.23875 0.96092 1.01799 1.01504 1.22907 0.95985 0.98263 0.99603 1.20806 0.98498 0.95877 0.98348 1.21776 0.98667 0.94291 1.00250 1.20138 0.87822 0.89913 0.95876 0.85478 1.55819 1.37015 1.30055 1.62844 1.01514 0.73117 0.71951 0.74746 1.93505 1.56151 1.63684 1.83444 1.93505 1.35445 1.81419 1.86371 1.29075 1.01617 1.37099 1.20719 1.20158 0.94797 0.93092 0.94300 1.21006 0.96728 1.13523 0.94272 1.17850 0.90704 0.84823 0.93013 1.19970 1.08486 1.24190 0.93332 0.89375 1.26151 0.94715 0.93085 1.01122 1.69825 1.16020 1.13990 1.38580 0.86142 0.80068 0.79618 0.80143 1.18756 1.19841 1.18161 1.21334 0.99278 1.07566 0.92017 1.20227 0.93561 0.93834 0.95605 1.24228 0.81258 0.77647 0.86799 1.90714 1.73314 1.37618 1.36657 1.84526 1.39974 1.53999 1.54329 0.88385 0.88841 0.87553 0.90289 0.89624 0.89189 0.90704 0.74998 0.87943 0.88144 0.89856 0.86012 0.87885 0.73394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 14.32 29.01 0.42 -1.59 16 2 C -0.15 -1.53 9.52 -36.02 -0.34 -1.87 16 3 C -0.10 -1.10 5.55 -27.88 -0.15 -1.25 16 4 C -0.11 -1.10 4.76 -26.73 -0.13 -1.22 16 5 C 0.17 2.22 2.68 -69.08 -0.18 2.04 16 6 H 0.13 1.63 7.23 -51.93 -0.38 1.25 16 7 N -1.10 -16.12 4.41 -5.88 -0.03 -16.15 16 8 S 2.69 51.85 5.65 -107.50 -0.61 51.24 16 9 O -0.98 -21.22 17.26 -57.17 -0.99 -22.20 16 10 O -0.98 -21.27 17.01 -57.17 -0.97 -22.25 16 11 C -0.79 -16.40 5.84 -39.29 -0.23 -16.63 16 12 C 0.00 -0.07 8.88 -39.66 -0.35 -0.42 16 13 C -0.23 -5.21 9.80 -38.87 -0.38 -5.59 16 14 C 0.14 3.36 5.58 -106.82 -0.60 2.76 16 15 C -0.43 -10.15 9.05 -37.74 -0.34 -10.49 16 16 H 0.09 1.95 7.91 -52.48 -0.41 1.53 16 17 C 0.07 1.60 5.14 -17.34 -0.09 1.51 16 18 N -0.76 -17.76 10.95 55.55 0.61 -17.15 16 19 Si 0.92 16.47 29.60 -169.99 -5.03 11.44 16 20 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 21 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.26 -4.58 7.11 56.52 0.40 -4.17 16 23 C -0.18 -4.31 8.70 -38.87 -0.34 -4.65 16 24 C -0.01 -0.26 9.49 -39.66 -0.38 -0.64 16 25 C 0.46 6.27 7.70 36.01 0.28 6.54 16 26 O -0.50 -8.47 17.19 -18.75 -0.32 -8.79 16 27 O -0.52 -5.17 13.23 -39.27 -0.52 -5.69 16 28 H 0.10 1.04 7.84 -52.49 -0.41 0.63 16 29 H 0.09 0.83 8.06 -52.49 -0.42 0.40 16 30 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.08 0.96 7.40 -51.93 -0.38 0.57 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 0.75 8.00 -51.93 -0.42 0.34 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.42 5.13 8.84 -34.47 -0.30 4.82 16 36 H 0.10 1.92 7.59 -52.48 -0.40 1.53 16 37 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 39 H 0.12 2.95 6.16 -52.49 -0.32 2.63 16 40 H 0.10 2.12 7.60 -52.48 -0.40 1.72 16 41 H 0.41 2.40 9.10 45.56 0.41 2.82 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -32.01 370.01 -9.36 -41.37 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.26 Total: 14.11 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: -2.82 Total: -31.51 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.58 Total: -33.30 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: -2.80 Total: -58.93 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.44 kcal Atomic # 16 Polarization: 51.85 SS G_CDS: -0.61 Total: 51.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.01 -9.36 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316689107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.586 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds