Wall clock time and date at job start Tue Mar 31 2020 22:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47385 * 275.36709 * 3 2 1 5 5 H 1.48493 * 109.47009 * 35.36754 * 3 2 1 6 6 H 1.48500 * 109.47072 * 155.36903 * 3 2 1 7 7 C 1.39933 * 119.99914 * 180.28151 * 2 1 3 8 8 H 1.07995 * 120.00273 * 341.75471 * 7 2 1 9 9 C 1.41442 * 120.00113 * 161.75149 * 7 2 1 10 10 C 1.40787 * 120.17898 * 153.23213 * 9 7 2 11 11 C 1.37695 * 120.01837 * 179.97438 * 10 9 7 12 12 C 1.38388 * 120.40448 * 0.02562 * 11 10 9 13 13 C 1.39815 * 120.36861 * 0.02562 * 12 11 10 14 14 C 1.48029 * 120.02336 * 179.97438 * 13 12 11 15 15 O 1.35239 * 120.00209 * 179.97438 * 14 13 12 16 16 N 1.29977 * 119.99447 * 359.97438 * 14 13 12 17 17 C 1.46507 * 119.99717 * 184.89111 * 16 14 13 18 18 C 1.52996 * 109.47081 * 114.94633 * 17 16 14 19 19 H 1.09002 * 109.42561 * 305.12519 * 18 17 16 20 20 C 1.53269 * 109.42245 * 185.30384 * 18 17 16 21 21 S 1.81874 * 108.53437 * 178.92634 * 20 18 17 22 22 O 1.42101 * 108.71706 * 297.53631 * 21 20 18 23 23 O 1.42101 * 108.85582 * 166.04853 * 21 20 18 24 24 C 1.81870 * 100.91273 * 51.76627 * 21 20 18 25 25 C 1.53272 * 108.53310 * 308.23227 * 24 21 20 26 26 O 1.42514 * 109.76880 * 60.98917 * 25 24 21 27 27 C 1.38952 * 119.96147 * 359.67154 * 13 12 11 28 28 H 0.96999 * 119.99847 * 359.72028 * 1 2 3 29 29 H 1.08000 * 119.98668 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.79494 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.82007 * 179.97438 * 12 11 10 32 32 H 0.96698 * 113.99917 * 265.30540 * 15 14 13 33 33 H 1.08993 * 109.46721 * 234.94784 * 17 16 14 34 34 H 1.08996 * 109.47273 * 354.94806 * 17 16 14 35 35 H 1.09000 * 109.62982 * 298.63863 * 20 18 17 36 36 H 1.09000 * 109.62326 * 59.21406 * 20 18 17 37 37 H 1.09003 * 109.62630 * 188.52024 * 24 21 20 38 38 H 1.09002 * 109.78607 * 68.04590 * 24 21 20 39 39 H 1.08989 * 109.42028 * 300.89147 * 25 24 21 40 40 H 1.09002 * 109.41762 * 181.07703 * 25 24 21 41 41 H 1.07999 * 120.19839 * 180.30234 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3764 2.1120 -1.3939 5 1 1.5010 2.6172 0.8104 6 1 3.5919 1.4101 0.5835 7 6 2.0079 -1.2118 -0.0060 8 1 1.5087 -2.1251 0.2824 9 6 3.3690 -1.2408 -0.3897 10 6 4.2223 -2.2458 0.1042 11 6 5.5467 -2.2712 -0.2720 12 6 6.0482 -1.3125 -1.1348 13 6 5.2158 -0.3063 -1.6343 14 6 5.7604 0.7157 -2.5563 15 8 4.9547 1.6885 -3.0397 16 7 7.0130 0.6781 -2.9013 17 6 7.5778 1.7486 -3.7268 18 6 8.6335 2.5098 -2.9225 19 1 8.1936 2.8632 -1.9899 20 6 9.1285 3.7094 -3.7379 21 16 10.3571 4.6140 -2.7480 22 8 9.7249 5.1045 -1.5737 23 8 11.0525 5.5192 -3.5944 24 6 11.4854 3.2654 -2.2834 25 6 10.6595 2.1281 -1.6721 26 8 9.7254 1.6410 -2.6319 27 6 3.8754 -0.2699 -1.2698 28 1 -0.4850 0.8400 0.0041 29 1 3.8380 -2.9971 0.7782 30 1 6.1982 -3.0436 0.1094 31 1 7.0885 -1.3411 -1.4233 32 1 4.5714 1.4880 -3.9045 33 1 8.0390 1.3173 -4.6152 34 1 6.7847 2.4340 -4.0255 35 1 9.5888 3.3593 -4.6619 36 1 8.2896 4.3659 -3.9693 37 1 12.2075 3.6278 -1.5517 38 1 12.0105 2.9027 -3.1671 39 1 10.1225 2.4988 -0.7993 40 1 11.3246 1.3188 -1.3706 41 1 3.2279 0.5027 -1.6572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329102226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:16 Heat of formation + Delta-G solvation = -108.131483 kcal Electronic energy + Delta-G solvation = -26990.300087 eV Core-core repulsion = 22963.328394 eV Total energy + Delta-G solvation = -4026.971693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -39.59455 -38.85087 -37.39542 -37.31526 -36.45150 -34.62871 -33.71398 -32.46489 -31.36838 -30.52325 -30.17145 -26.98036 -25.15639 -24.30267 -22.83516 -21.44481 -21.42065 -19.67765 -19.31672 -17.72308 -17.52125 -17.35938 -16.98879 -16.58440 -16.26059 -16.00296 -15.80223 -15.19992 -14.96340 -14.67748 -14.53625 -13.82261 -13.71307 -13.62289 -13.27598 -13.20093 -12.69112 -12.63159 -12.54235 -12.43700 -12.15413 -12.12156 -11.86194 -11.68253 -11.26726 -11.04690 -10.84850 -10.76813 -10.75227 -10.42827 -10.30245 -9.91643 -9.83708 -9.63474 -9.34848 -9.15975 -7.73204 -7.65136 -7.00052 -4.54791 -0.47531 1.48096 2.16034 2.60467 2.88181 3.09164 3.15242 3.21488 3.27228 3.33060 3.50498 3.76397 3.95454 4.10585 4.26178 4.28890 4.41911 4.52310 4.59097 4.72889 4.73416 4.98800 5.16721 5.24349 5.26930 5.35383 5.40196 5.67887 5.95218 6.08900 6.27371 6.47791 6.63726 6.71732 6.79408 7.01591 7.21546 7.25540 7.50265 7.61376 7.70743 7.98996 8.26806 8.30153 8.54692 8.72822 10.01942 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017782 B = 0.002934 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.251188 B = 9542.303379 C =10286.974712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.084 3.916 3 Si 0.907 3.093 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.447 4.447 8 H 0.092 0.908 9 C 0.082 3.918 10 C -0.185 4.185 11 C -0.097 4.097 12 C -0.181 4.181 13 C -0.047 4.047 14 C 0.396 3.604 15 O -0.539 6.539 16 N -0.534 5.534 17 C 0.052 3.948 18 C 0.111 3.889 19 H 0.083 0.917 20 C -0.636 4.636 21 S 2.413 3.587 22 O -0.930 6.930 23 O -0.938 6.938 24 C -0.640 4.640 25 C 0.068 3.932 26 O -0.352 6.352 27 C -0.200 4.200 28 H 0.286 0.714 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.517 6.095 -7.380 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.168 1.168 7 C -0.475 4.475 8 H 0.110 0.890 9 C 0.079 3.921 10 C -0.206 4.206 11 C -0.115 4.115 12 C -0.202 4.202 13 C -0.050 4.050 14 C 0.172 3.828 15 O -0.346 6.346 16 N -0.261 5.261 17 C -0.079 4.079 18 C 0.052 3.948 19 H 0.101 0.899 20 C -0.766 4.766 21 S 2.595 3.405 22 O -0.928 6.928 23 O -0.935 6.935 24 C -0.770 4.770 25 C -0.010 4.010 26 O -0.270 6.270 27 C -0.222 4.222 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.258 0.742 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.094 0.906 40 H 0.138 0.862 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.199 6.848 -6.739 20.579 hybrid contribution -0.420 0.758 -1.016 1.335 sum 17.779 7.606 -7.755 20.834 Atomic orbital electron populations 1.69691 1.08092 1.30347 1.34921 1.26163 0.94742 1.01762 0.90851 0.86394 0.81153 0.79754 0.79315 1.18939 1.21980 1.16791 1.19479 0.93041 0.96110 1.38857 0.89016 1.17639 0.93226 0.91126 0.90099 1.21201 0.93151 1.02374 1.03843 1.20649 0.95382 0.97770 0.97744 1.20537 0.98785 0.97311 1.03588 1.18188 0.93981 0.94317 0.98471 1.22929 0.85841 0.84214 0.89769 1.84595 1.66381 1.43412 1.40165 1.72975 1.12188 1.22290 1.18612 1.21902 0.95579 0.94084 0.96293 1.21838 0.87757 0.87633 0.97573 0.89888 1.30939 1.18644 1.11801 1.15215 1.08155 0.78099 0.77553 0.76643 1.93635 1.75126 1.77226 1.46767 1.93608 1.72518 1.59257 1.68105 1.30882 1.15814 1.17333 1.12963 1.22393 0.91133 0.96416 0.91042 1.87933 1.35289 1.43054 1.60678 1.21180 0.94009 1.03183 1.03800 0.90381 0.87858 0.88139 0.86919 0.74227 0.89141 0.91162 0.83689 0.83563 0.83796 0.83924 0.90614 0.86230 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.99 13.93 55.55 0.77 -20.21 16 2 C 0.08 2.15 5.42 -17.34 -0.09 2.05 16 3 Si 0.91 20.66 24.43 -169.99 -4.15 16.51 16 4 H -0.26 -5.79 6.67 56.52 0.38 -5.42 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.24 -5.81 6.77 56.52 0.38 -5.42 16 7 C -0.45 -11.63 9.59 -37.73 -0.36 -11.99 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.08 1.99 5.18 -106.87 -0.55 1.44 16 10 C -0.19 -4.07 9.78 -38.82 -0.38 -4.45 16 11 C -0.10 -1.93 10.01 -39.72 -0.40 -2.33 16 12 C -0.18 -3.65 9.58 -38.94 -0.37 -4.02 16 13 C -0.05 -0.99 5.87 -105.03 -0.62 -1.61 16 14 C 0.40 7.11 7.73 -14.32 -0.11 7.00 16 15 O -0.54 -8.58 11.20 -17.41 -0.19 -8.78 16 16 N -0.53 -8.75 9.59 -59.21 -0.57 -9.31 16 17 C 0.05 0.65 6.00 -4.04 -0.02 0.62 16 18 C 0.11 1.25 2.72 -26.59 -0.07 1.17 16 19 H 0.08 1.03 7.99 -51.93 -0.41 0.62 16 20 C -0.64 -4.97 5.91 37.30 0.22 -4.75 16 21 S 2.41 21.11 5.36 -107.50 -0.58 20.53 16 22 O -0.93 -11.67 18.10 -57.81 -1.05 -12.72 16 23 O -0.94 -10.87 18.11 -57.81 -1.05 -11.91 16 24 C -0.64 -3.96 6.63 37.30 0.25 -3.71 16 25 C 0.07 0.56 6.67 37.30 0.25 0.81 16 26 O -0.35 -3.92 10.08 -35.23 -0.36 -4.27 16 27 C -0.20 -4.61 6.69 -38.47 -0.26 -4.87 16 28 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 29 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 31 H 0.11 2.13 7.54 -52.49 -0.40 1.74 16 32 H 0.40 4.39 9.06 45.56 0.41 4.80 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.79 6.73 -51.93 -0.35 0.44 16 35 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.15 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.64 7.99 -51.94 -0.41 0.22 16 40 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.11 2.52 3.86 -52.49 -0.20 2.32 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -33.88 353.60 -8.71 -42.59 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.35 Total: 6.88 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -2.52 Total: -24.64 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 0.21 Total: -29.52 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -2.64 Total: -37.69 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.15 Total: 16.51 kcal Atomic # 16 Polarization: 21.11 SS G_CDS: -0.58 Total: 20.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.88 -8.71 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329102226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.538 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds