Wall clock time and date at job start Tue Mar 31 2020 22:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47385 * 275.36709 * 3 2 1 5 5 H 1.48493 * 109.47009 * 35.36754 * 3 2 1 6 6 H 1.48500 * 109.47072 * 155.36903 * 3 2 1 7 7 C 1.39933 * 119.99914 * 180.28151 * 2 1 3 8 8 H 1.07995 * 120.00273 * 341.75471 * 7 2 1 9 9 C 1.41442 * 120.00113 * 161.75149 * 7 2 1 10 10 C 1.40787 * 120.17898 * 153.23213 * 9 7 2 11 11 C 1.37695 * 120.01837 * 179.97438 * 10 9 7 12 12 C 1.38388 * 120.40448 * 0.02562 * 11 10 9 13 13 C 1.39815 * 120.36861 * 0.02562 * 12 11 10 14 14 C 1.48029 * 120.02336 * 179.97438 * 13 12 11 15 15 O 1.35239 * 120.00209 * 179.97438 * 14 13 12 16 16 N 1.29977 * 119.99447 * 359.97438 * 14 13 12 17 17 C 1.46507 * 119.99717 * 184.89111 * 16 14 13 18 18 C 1.52996 * 109.47081 * 114.94633 * 17 16 14 19 19 H 1.09002 * 109.42561 * 305.12519 * 18 17 16 20 20 C 1.53269 * 109.42245 * 185.30384 * 18 17 16 21 21 S 1.81874 * 108.53437 * 178.92634 * 20 18 17 22 22 O 1.42101 * 108.71706 * 297.53631 * 21 20 18 23 23 O 1.42101 * 108.85582 * 166.04853 * 21 20 18 24 24 C 1.81870 * 100.91273 * 51.76627 * 21 20 18 25 25 C 1.53272 * 108.53310 * 308.23227 * 24 21 20 26 26 O 1.42514 * 109.76880 * 60.98917 * 25 24 21 27 27 C 1.38952 * 119.96147 * 359.67154 * 13 12 11 28 28 H 0.96999 * 119.99847 * 359.72028 * 1 2 3 29 29 H 1.08000 * 119.98668 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.79494 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.82007 * 179.97438 * 12 11 10 32 32 H 0.96698 * 113.99917 * 265.30540 * 15 14 13 33 33 H 1.08993 * 109.46721 * 234.94784 * 17 16 14 34 34 H 1.08996 * 109.47273 * 354.94806 * 17 16 14 35 35 H 1.09000 * 109.62982 * 298.63863 * 20 18 17 36 36 H 1.09000 * 109.62326 * 59.21406 * 20 18 17 37 37 H 1.09003 * 109.62630 * 188.52024 * 24 21 20 38 38 H 1.09002 * 109.78607 * 68.04590 * 24 21 20 39 39 H 1.08989 * 109.42028 * 300.89147 * 25 24 21 40 40 H 1.09002 * 109.41762 * 181.07703 * 25 24 21 41 41 H 1.07999 * 120.19839 * 180.30234 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3764 2.1120 -1.3939 5 1 1.5010 2.6172 0.8104 6 1 3.5919 1.4101 0.5835 7 6 2.0079 -1.2118 -0.0060 8 1 1.5087 -2.1251 0.2824 9 6 3.3690 -1.2408 -0.3897 10 6 4.2223 -2.2458 0.1042 11 6 5.5467 -2.2712 -0.2720 12 6 6.0482 -1.3125 -1.1348 13 6 5.2158 -0.3063 -1.6343 14 6 5.7604 0.7157 -2.5563 15 8 4.9547 1.6885 -3.0397 16 7 7.0130 0.6781 -2.9013 17 6 7.5778 1.7486 -3.7268 18 6 8.6335 2.5098 -2.9225 19 1 8.1936 2.8632 -1.9899 20 6 9.1285 3.7094 -3.7379 21 16 10.3571 4.6140 -2.7480 22 8 9.7249 5.1045 -1.5737 23 8 11.0525 5.5192 -3.5944 24 6 11.4854 3.2654 -2.2834 25 6 10.6595 2.1281 -1.6721 26 8 9.7254 1.6410 -2.6319 27 6 3.8754 -0.2699 -1.2698 28 1 -0.4850 0.8400 0.0041 29 1 3.8380 -2.9971 0.7782 30 1 6.1982 -3.0436 0.1094 31 1 7.0885 -1.3411 -1.4233 32 1 4.5714 1.4880 -3.9045 33 1 8.0390 1.3173 -4.6152 34 1 6.7847 2.4340 -4.0255 35 1 9.5888 3.3593 -4.6619 36 1 8.2896 4.3659 -3.9693 37 1 12.2075 3.6278 -1.5517 38 1 12.0105 2.9027 -3.1671 39 1 10.1225 2.4988 -0.7993 40 1 11.3246 1.3188 -1.3706 41 1 3.2279 0.5027 -1.6572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329102226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:15 Heat of formation + Delta-G solvation = -138.245799 kcal Electronic energy + Delta-G solvation = -26991.605942 eV Core-core repulsion = 22963.328394 eV Total energy + Delta-G solvation = -4028.277548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64698 -39.97295 -38.88565 -38.15925 -37.24329 -35.72711 -35.46468 -33.52782 -32.22850 -32.00603 -31.69132 -28.04451 -26.95908 -25.03450 -23.99309 -23.13767 -22.48467 -21.13791 -20.03894 -19.34102 -18.74834 -18.14018 -17.89786 -17.63489 -17.34773 -16.95010 -16.59061 -16.44689 -16.32194 -16.29336 -15.58956 -15.34211 -14.83954 -14.51829 -14.39723 -14.32124 -13.93778 -13.83048 -13.75055 -13.38347 -13.31587 -13.24736 -12.82674 -12.70888 -12.63782 -12.59862 -12.40825 -12.17839 -11.94686 -11.62222 -11.52989 -11.35546 -11.08805 -11.01657 -10.88038 -10.61189 -9.49619 -9.25169 -8.89891 -6.48666 -1.13004 0.01411 0.85094 1.25662 1.31370 1.48464 1.50781 1.60057 2.10840 2.39301 2.54137 2.63420 2.71220 2.89913 3.12978 3.46520 3.55141 3.65145 3.75715 3.85215 3.95582 4.13815 4.17264 4.34723 4.44182 4.57070 4.59590 4.66945 4.72445 4.73265 4.79503 4.84984 5.00634 5.11119 5.28157 5.49184 5.81287 5.87856 5.92955 5.97171 6.17347 6.23514 6.36894 6.71337 6.83251 7.06172 8.18392 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017782 B = 0.002934 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.251188 B = 9542.303379 C =10286.974712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.054 3.946 3 Si 0.956 3.044 4 H -0.251 1.251 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.481 4.481 8 H 0.062 0.938 9 C 0.062 3.938 10 C -0.197 4.197 11 C -0.091 4.091 12 C -0.169 4.169 13 C -0.054 4.054 14 C 0.382 3.618 15 O -0.543 6.543 16 N -0.529 5.529 17 C 0.043 3.957 18 C 0.109 3.891 19 H 0.063 0.937 20 C -0.626 4.626 21 S 2.417 3.583 22 O -0.977 6.977 23 O -0.970 6.970 24 C -0.618 4.618 25 C 0.057 3.943 26 O -0.366 6.366 27 C -0.213 4.213 28 H 0.293 0.707 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.418 0.582 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.068 0.932 40 H 0.142 0.858 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.108 6.380 -8.899 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.161 4.161 3 Si 0.781 3.219 4 H -0.176 1.176 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.060 3.940 10 C -0.217 4.217 11 C -0.109 4.109 12 C -0.189 4.189 13 C -0.056 4.056 14 C 0.156 3.844 15 O -0.352 6.352 16 N -0.256 5.256 17 C -0.087 4.087 18 C 0.049 3.951 19 H 0.081 0.919 20 C -0.756 4.756 21 S 2.604 3.396 22 O -0.975 6.975 23 O -0.967 6.967 24 C -0.750 4.750 25 C -0.020 4.020 26 O -0.285 6.285 27 C -0.234 4.234 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.279 0.721 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.192 0.808 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.086 0.914 40 H 0.160 0.840 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.783 7.163 -8.279 24.379 hybrid contribution -1.218 0.522 -0.629 1.467 sum 20.565 7.686 -8.908 23.693 Atomic orbital electron populations 1.69715 1.08953 1.31309 1.37417 1.26668 0.95206 1.03696 0.90554 0.85652 0.79176 0.77292 0.79803 1.17628 1.21074 1.18526 1.19466 0.94416 0.95561 1.41636 0.91976 1.17810 0.92889 0.92541 0.90764 1.21422 0.94122 1.02012 1.04119 1.21035 0.94766 0.98305 0.96776 1.20908 0.99503 0.96335 1.02179 1.18503 0.93284 0.95231 0.98576 1.22377 0.86632 0.84607 0.90736 1.84564 1.66359 1.42675 1.41634 1.72856 1.11315 1.23582 1.17827 1.22179 0.96303 0.93611 0.96572 1.21743 0.87864 0.88357 0.97128 0.91882 1.30839 1.18862 1.10296 1.15586 1.07765 0.78178 0.78091 0.75557 1.93578 1.76327 1.79068 1.48491 1.93568 1.73094 1.61440 1.68626 1.30717 1.14946 1.14635 1.14680 1.22640 0.91150 0.97746 0.90477 1.87897 1.35503 1.43694 1.61373 1.21183 0.95143 1.03009 1.04065 0.89652 0.87221 0.84313 0.84991 0.72062 0.87017 0.89857 0.80779 0.82341 0.81482 0.81280 0.91379 0.84048 0.87749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.97 13.93 21.82 0.30 -45.67 16 2 C 0.05 2.84 5.42 85.25 0.46 3.31 16 3 Si 0.96 43.44 24.43 68.60 1.68 45.12 16 4 H -0.25 -10.74 6.67 99.48 0.66 -10.08 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -12.40 6.77 99.48 0.67 -11.73 16 7 C -0.48 -26.33 9.59 23.47 0.22 -26.11 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 C 0.06 3.08 5.18 -21.32 -0.11 2.97 16 10 C -0.20 -8.57 9.78 22.76 0.22 -8.34 16 11 C -0.09 -3.38 10.01 22.18 0.22 -3.16 16 12 C -0.17 -6.32 9.58 22.69 0.22 -6.10 16 13 C -0.05 -2.17 5.87 -20.13 -0.12 -2.29 16 14 C 0.38 12.85 7.73 87.57 0.68 13.53 16 15 O -0.54 -16.17 11.20 -85.22 -0.95 -17.12 16 16 N -0.53 -15.74 9.59 -455.49 -4.37 -20.10 16 17 C 0.04 0.92 6.00 86.38 0.52 1.44 16 18 C 0.11 2.12 2.72 30.68 0.08 2.20 16 19 H 0.06 1.48 7.99 -2.39 -0.02 1.46 16 20 C -0.63 -7.85 5.91 72.07 0.43 -7.42 16 21 S 2.42 37.60 5.36 -56.49 -0.30 37.29 16 22 O -0.98 -23.99 18.10 -127.39 -2.31 -26.30 16 23 O -0.97 -20.88 18.11 -127.39 -2.31 -23.19 16 24 C -0.62 -5.38 6.63 72.07 0.48 -4.90 16 25 C 0.06 0.76 6.67 72.07 0.48 1.24 16 26 O -0.37 -6.90 10.08 -148.98 -1.50 -8.40 16 27 C -0.21 -9.76 6.69 22.99 0.15 -9.60 16 28 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 29 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.13 4.47 7.54 -2.91 -0.02 4.45 16 32 H 0.42 8.26 9.06 -74.06 -0.67 7.59 16 33 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.59 6.73 -2.39 -0.02 1.57 16 35 H 0.17 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.17 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 1.01 7.99 -2.39 -0.02 0.99 16 40 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 4.82 3.86 -2.91 -0.01 4.81 16 Total: -1.00 -75.57 353.60 -5.49 -81.06 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.33 Total: 20.55 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 3.94 Total: -43.23 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -4.06 Total: -65.77 kcal Atomic # 8 Polarization: -67.95 SS G_CDS: -7.07 Total: -75.02 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.68 Total: 45.12 kcal Atomic # 16 Polarization: 37.60 SS G_CDS: -0.30 Total: 37.29 kcal Total: -75.57 -5.49 -81.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329102226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.189 kcal (2) G-P(sol) polarization free energy of solvation -75.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds