Wall clock time and date at job start Tue Mar 31 2020 22:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86804 * 119.99712 * 2 1 4 4 H 1.48499 * 109.46703 * 275.41055 * 3 2 1 5 5 H 1.48500 * 109.47394 * 35.40918 * 3 2 1 6 6 H 1.48498 * 109.47147 * 155.41578 * 3 2 1 7 7 C 1.39931 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00076 * 341.72554 * 7 2 1 9 9 C 1.41434 * 119.99850 * 161.72089 * 7 2 1 10 10 C 1.40782 * 120.18168 * 330.20453 * 9 7 2 11 11 C 1.37696 * 120.02035 * 180.02562 * 10 9 7 12 12 C 1.38400 * 120.40514 * 0.02562 * 11 10 9 13 13 C 1.39814 * 120.36160 * 359.97438 * 12 11 10 14 14 C 1.48034 * 120.01397 * 180.02562 * 13 12 11 15 15 O 1.35235 * 119.99826 * 179.97438 * 14 13 12 16 16 N 1.29974 * 119.99638 * 359.97438 * 14 13 12 17 17 C 1.46507 * 119.99634 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46876 * 114.99555 * 17 16 14 19 19 H 1.09003 * 109.36607 * 60.15638 * 18 17 16 20 20 C 1.53269 * 109.41953 * 179.97438 * 18 17 16 21 21 S 1.81877 * 108.53309 * 181.08016 * 20 18 17 22 22 O 1.42100 * 108.71958 * 62.46774 * 21 20 18 23 23 O 1.42107 * 108.71633 * 194.01084 * 21 20 18 24 24 C 1.81871 * 100.91237 * 308.23410 * 21 20 18 25 25 C 1.53277 * 108.53290 * 51.76764 * 24 21 20 26 26 O 1.42517 * 109.76938 * 299.01555 * 25 24 21 27 27 C 1.38942 * 119.96581 * 0.27404 * 13 12 11 28 28 H 0.96997 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.98786 * 359.97413 * 10 9 7 30 30 H 1.08004 * 119.79747 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.81487 * 179.97438 * 12 11 10 32 32 H 0.96703 * 114.00020 * 0.02562 * 15 14 13 33 33 H 1.09006 * 109.46699 * 355.00181 * 17 16 14 34 34 H 1.08993 * 109.47200 * 234.99907 * 17 16 14 35 35 H 1.08999 * 109.62561 * 61.36565 * 20 18 17 36 36 H 1.08996 * 109.63073 * 300.79288 * 20 18 17 37 37 H 1.09002 * 109.62586 * 171.47485 * 24 21 20 38 38 H 1.08997 * 109.63083 * 292.05251 * 24 21 20 39 39 H 1.08994 * 109.42045 * 178.92440 * 25 24 21 40 40 H 1.08997 * 109.37008 * 59.07178 * 25 24 21 41 41 H 1.07997 * 120.19443 * 179.70506 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1124 -1.3939 5 1 1.5015 2.6171 0.8112 6 1 3.5923 1.4100 0.5825 7 6 2.0080 -1.2118 0.0005 8 1 1.5089 -2.1234 0.2942 9 6 3.3688 -1.2428 -0.3836 10 6 3.8624 -0.3107 -1.3161 11 6 5.1877 -0.3443 -1.6882 12 6 6.0423 -1.2912 -1.1510 13 6 5.5696 -2.2247 -0.2237 14 6 6.4905 -3.2338 0.3464 15 8 6.0331 -4.1362 1.2437 16 7 7.7387 -3.2524 -0.0156 17 6 8.6503 -4.2507 0.5490 18 6 9.1297 -5.1888 -0.5606 19 1 9.6530 -4.6103 -1.3219 20 6 10.0837 -6.2323 0.0312 21 16 10.6632 -7.3132 -1.3119 22 8 11.3882 -6.5281 -2.2485 23 8 11.2747 -8.4620 -0.7410 24 6 9.0822 -7.8064 -2.0634 25 6 8.2688 -6.5418 -2.3611 26 8 8.0068 -5.8405 -1.1484 27 6 4.2339 -2.2080 0.1586 28 1 -0.4850 0.8400 -0.0004 29 1 3.2012 0.4303 -1.7404 30 1 5.5625 0.3723 -2.4041 31 1 7.0800 -1.3091 -1.4499 32 1 5.0929 -4.0439 1.4500 33 1 8.1290 -4.8279 1.3127 34 1 9.5080 -3.7481 0.9957 35 1 9.5582 -6.8267 0.7786 36 1 10.9353 -5.7309 0.4908 37 1 9.2706 -8.3472 -2.9908 38 1 8.5303 -8.4422 -1.3712 39 1 7.3250 -6.8200 -2.8300 40 1 8.8337 -5.8993 -3.0365 41 1 3.8638 -2.9303 0.8710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329102228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:20 Heat of formation + Delta-G solvation = -116.248589 kcal Electronic energy + Delta-G solvation = -26734.528120 eV Core-core repulsion = 22707.204443 eV Total energy + Delta-G solvation = -4027.323677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.53630 -38.90614 -37.37185 -37.26457 -36.42527 -34.67041 -33.77565 -32.42604 -31.33282 -30.58889 -30.18107 -26.98959 -25.18914 -24.26852 -22.89441 -21.50661 -20.83300 -20.15489 -19.27362 -18.37748 -17.36290 -17.10753 -16.89454 -16.39081 -16.25553 -16.05404 -15.52875 -15.27070 -14.93665 -14.72641 -14.24256 -13.82573 -13.71608 -13.61969 -13.38564 -13.06740 -12.82674 -12.71452 -12.51858 -12.41788 -12.17865 -12.12345 -12.02947 -11.82073 -11.63720 -11.07846 -10.94346 -10.86387 -10.71571 -10.52438 -10.28641 -9.98352 -9.81276 -9.37786 -9.31454 -9.09268 -7.90346 -7.65649 -7.07062 -4.64253 -0.43378 1.68590 2.19158 2.46037 3.00842 3.11043 3.13062 3.16497 3.24016 3.32648 3.55679 3.82755 3.86901 4.10662 4.30580 4.34768 4.39637 4.56456 4.61936 4.73537 4.80032 5.16624 5.22192 5.24513 5.30758 5.33464 5.53705 5.71410 5.87176 5.89865 6.12564 6.33904 6.45676 6.68826 6.80495 6.89409 7.12293 7.36308 7.47828 7.63439 7.76832 7.86491 8.18843 8.26904 8.43885 8.64269 9.95169 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.002320 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.269917 B =12064.823819 C =12172.416374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.085 3.915 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.450 4.450 8 H 0.092 0.908 9 C 0.090 3.910 10 C -0.214 4.214 11 C -0.088 4.088 12 C -0.176 4.176 13 C -0.062 4.062 14 C 0.408 3.592 15 O -0.520 6.520 16 N -0.546 5.546 17 C 0.060 3.940 18 C 0.106 3.894 19 H 0.089 0.911 20 C -0.635 4.635 21 S 2.413 3.587 22 O -0.933 6.933 23 O -0.939 6.939 24 C -0.640 4.640 25 C 0.070 3.930 26 O -0.359 6.359 27 C -0.191 4.191 28 H 0.287 0.713 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.403 0.597 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.794 -10.160 -0.986 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.166 1.166 7 C -0.478 4.478 8 H 0.110 0.890 9 C 0.087 3.913 10 C -0.234 4.234 11 C -0.106 4.106 12 C -0.197 4.197 13 C -0.063 4.063 14 C 0.185 3.815 15 O -0.317 6.317 16 N -0.282 5.282 17 C -0.071 4.071 18 C 0.046 3.954 19 H 0.107 0.893 20 C -0.764 4.764 21 S 2.596 3.404 22 O -0.930 6.930 23 O -0.936 6.936 24 C -0.770 4.770 25 C -0.008 4.008 26 O -0.277 6.277 27 C -0.212 4.212 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.372 -10.243 -1.535 18.536 hybrid contribution -1.229 0.265 0.793 1.487 sum 14.143 -9.978 -0.742 17.325 Atomic orbital electron populations 1.69684 1.08101 1.30430 1.34650 1.26143 0.94728 1.01746 0.90877 0.86352 0.81367 0.79827 0.78989 1.19497 1.21658 1.16644 1.19445 0.92953 0.96242 1.39186 0.89003 1.17522 0.92973 0.90786 0.90005 1.21256 0.95727 1.03901 1.02483 1.20662 0.93664 0.97572 0.98727 1.20513 0.99247 0.98168 1.01774 1.18419 0.91942 0.95922 1.00040 1.22696 0.90408 0.85015 0.83348 1.84805 1.33005 1.54711 1.59177 1.73098 1.00436 1.25245 1.29375 1.21769 0.97811 0.92897 0.94575 1.21976 0.86175 0.90498 0.96712 0.89330 1.30921 1.11370 1.14830 1.19315 1.08136 0.77877 0.76649 0.77781 1.93617 1.68187 1.70627 1.60580 1.93607 1.73396 1.48430 1.78195 1.30870 1.21799 1.09492 1.14801 1.22372 1.02159 0.88826 0.87409 1.87918 1.33350 1.67976 1.38462 1.20940 0.91541 1.04337 1.04394 0.90296 0.87841 0.88054 0.86733 0.74068 0.91773 0.89084 0.83843 0.83571 0.83834 0.83962 0.86387 0.90599 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.28 13.93 55.55 0.77 -19.51 16 2 C 0.08 2.07 5.40 -17.34 -0.09 1.98 16 3 Si 0.91 19.44 24.52 -169.99 -4.17 15.27 16 4 H -0.27 -5.58 6.71 56.52 0.38 -5.20 16 5 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.24 -5.32 6.86 56.52 0.39 -4.93 16 7 C -0.45 -11.18 9.57 -37.73 -0.36 -11.54 16 8 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.09 2.07 5.10 -106.87 -0.55 1.53 16 10 C -0.21 -4.74 7.17 -38.82 -0.28 -5.02 16 11 C -0.09 -1.76 10.01 -39.72 -0.40 -2.16 16 12 C -0.18 -3.46 9.58 -38.93 -0.37 -3.83 16 13 C -0.06 -1.19 5.87 -105.03 -0.62 -1.81 16 14 C 0.41 7.07 7.93 -14.32 -0.11 6.96 16 15 O -0.52 -7.89 12.00 -17.40 -0.21 -8.10 16 16 N -0.55 -9.09 9.50 -59.21 -0.56 -9.65 16 17 C 0.06 0.80 6.02 -4.04 -0.02 0.77 16 18 C 0.11 1.18 2.75 -26.59 -0.07 1.11 16 19 H 0.09 0.98 7.99 -51.93 -0.41 0.56 16 20 C -0.63 -5.04 5.91 37.30 0.22 -4.82 16 21 S 2.41 20.97 5.36 -107.50 -0.58 20.39 16 22 O -0.93 -11.05 18.10 -57.79 -1.05 -12.10 16 23 O -0.94 -10.99 18.11 -57.79 -1.05 -12.04 16 24 C -0.64 -4.30 6.63 37.30 0.25 -4.06 16 25 C 0.07 0.62 6.67 37.30 0.25 0.87 16 26 O -0.36 -4.34 9.99 -35.23 -0.35 -4.69 16 27 C -0.19 -3.87 9.23 -38.47 -0.35 -4.23 16 28 H 0.29 6.54 8.30 -40.82 -0.34 6.21 16 29 H 0.10 2.29 4.73 -52.49 -0.25 2.04 16 30 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.11 2.12 7.54 -52.49 -0.40 1.73 16 32 H 0.40 4.99 6.64 45.56 0.30 5.29 16 33 H 0.06 0.87 6.74 -51.93 -0.35 0.52 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.15 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.63 7.99 -51.93 -0.41 0.21 16 41 H 0.10 1.81 6.28 -52.49 -0.33 1.48 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -32.33 351.17 -8.81 -41.14 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.40 Total: 8.22 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.51 Total: -24.24 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 0.21 Total: -29.16 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -2.65 Total: -36.92 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.17 Total: 15.27 kcal Atomic # 16 Polarization: 20.97 SS G_CDS: -0.58 Total: 20.39 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.33 -8.81 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329102228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.107 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds