Wall clock time and date at job start Tue Mar 31 2020 22:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86804 * 119.99712 * 2 1 4 4 H 1.48499 * 109.46703 * 275.41055 * 3 2 1 5 5 H 1.48500 * 109.47394 * 35.40918 * 3 2 1 6 6 H 1.48498 * 109.47147 * 155.41578 * 3 2 1 7 7 C 1.39931 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00076 * 341.72554 * 7 2 1 9 9 C 1.41434 * 119.99850 * 161.72089 * 7 2 1 10 10 C 1.40782 * 120.18168 * 330.20453 * 9 7 2 11 11 C 1.37696 * 120.02035 * 180.02562 * 10 9 7 12 12 C 1.38400 * 120.40514 * 0.02562 * 11 10 9 13 13 C 1.39814 * 120.36160 * 359.97438 * 12 11 10 14 14 C 1.48034 * 120.01397 * 180.02562 * 13 12 11 15 15 O 1.35235 * 119.99826 * 179.97438 * 14 13 12 16 16 N 1.29974 * 119.99638 * 359.97438 * 14 13 12 17 17 C 1.46507 * 119.99634 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46876 * 114.99555 * 17 16 14 19 19 H 1.09003 * 109.36607 * 60.15638 * 18 17 16 20 20 C 1.53269 * 109.41953 * 179.97438 * 18 17 16 21 21 S 1.81877 * 108.53309 * 181.08016 * 20 18 17 22 22 O 1.42100 * 108.71958 * 62.46774 * 21 20 18 23 23 O 1.42107 * 108.71633 * 194.01084 * 21 20 18 24 24 C 1.81871 * 100.91237 * 308.23410 * 21 20 18 25 25 C 1.53277 * 108.53290 * 51.76764 * 24 21 20 26 26 O 1.42517 * 109.76938 * 299.01555 * 25 24 21 27 27 C 1.38942 * 119.96581 * 0.27404 * 13 12 11 28 28 H 0.96997 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.98786 * 359.97413 * 10 9 7 30 30 H 1.08004 * 119.79747 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.81487 * 179.97438 * 12 11 10 32 32 H 0.96703 * 114.00020 * 0.02562 * 15 14 13 33 33 H 1.09006 * 109.46699 * 355.00181 * 17 16 14 34 34 H 1.08993 * 109.47200 * 234.99907 * 17 16 14 35 35 H 1.08999 * 109.62561 * 61.36565 * 20 18 17 36 36 H 1.08996 * 109.63073 * 300.79288 * 20 18 17 37 37 H 1.09002 * 109.62586 * 171.47485 * 24 21 20 38 38 H 1.08997 * 109.63083 * 292.05251 * 24 21 20 39 39 H 1.08994 * 109.42045 * 178.92440 * 25 24 21 40 40 H 1.08997 * 109.37008 * 59.07178 * 25 24 21 41 41 H 1.07997 * 120.19443 * 179.70506 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1124 -1.3939 5 1 1.5015 2.6171 0.8112 6 1 3.5923 1.4100 0.5825 7 6 2.0080 -1.2118 0.0005 8 1 1.5089 -2.1234 0.2942 9 6 3.3688 -1.2428 -0.3836 10 6 3.8624 -0.3107 -1.3161 11 6 5.1877 -0.3443 -1.6882 12 6 6.0423 -1.2912 -1.1510 13 6 5.5696 -2.2247 -0.2237 14 6 6.4905 -3.2338 0.3464 15 8 6.0331 -4.1362 1.2437 16 7 7.7387 -3.2524 -0.0156 17 6 8.6503 -4.2507 0.5490 18 6 9.1297 -5.1888 -0.5606 19 1 9.6530 -4.6103 -1.3219 20 6 10.0837 -6.2323 0.0312 21 16 10.6632 -7.3132 -1.3119 22 8 11.3882 -6.5281 -2.2485 23 8 11.2747 -8.4620 -0.7410 24 6 9.0822 -7.8064 -2.0634 25 6 8.2688 -6.5418 -2.3611 26 8 8.0068 -5.8405 -1.1484 27 6 4.2339 -2.2080 0.1586 28 1 -0.4850 0.8400 -0.0004 29 1 3.2012 0.4303 -1.7404 30 1 5.5625 0.3723 -2.4041 31 1 7.0800 -1.3091 -1.4499 32 1 5.0929 -4.0439 1.4500 33 1 8.1290 -4.8279 1.3127 34 1 9.5080 -3.7481 0.9957 35 1 9.5582 -6.8267 0.7786 36 1 10.9353 -5.7309 0.4908 37 1 9.2706 -8.3472 -2.9908 38 1 8.5303 -8.4422 -1.3712 39 1 7.3250 -6.8200 -2.8300 40 1 8.8337 -5.8993 -3.0365 41 1 3.8638 -2.9303 0.8710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329102228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:19 Heat of formation + Delta-G solvation = -144.183650 kcal Electronic energy + Delta-G solvation = -26735.739475 eV Core-core repulsion = 22707.204443 eV Total energy + Delta-G solvation = -4028.535033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.64299 -40.00724 -38.77114 -38.14269 -37.22082 -35.76524 -35.46895 -33.48124 -32.21595 -31.98960 -31.69887 -28.08065 -26.87515 -25.03787 -24.14697 -22.61147 -22.39840 -21.46668 -20.02033 -19.89602 -18.25718 -18.09212 -17.83133 -17.66105 -17.13065 -17.01732 -16.81426 -16.43294 -16.27264 -15.85755 -15.38183 -15.28955 -15.09342 -14.53900 -14.42357 -14.15804 -13.88841 -13.76543 -13.73101 -13.45278 -13.34293 -13.27375 -13.23124 -12.86207 -12.68437 -12.61678 -12.55876 -12.19983 -11.72940 -11.64033 -11.51260 -11.38317 -11.07092 -11.06472 -10.54881 -10.42773 -9.56314 -9.20343 -8.87593 -6.49182 -1.10268 0.17845 0.79499 1.29964 1.43826 1.49545 1.54141 1.78870 2.13829 2.43279 2.55582 2.67232 2.77578 2.89673 3.16059 3.41880 3.50843 3.70033 3.76919 3.91738 3.97113 4.15452 4.22737 4.31228 4.36141 4.51722 4.64415 4.66214 4.72023 4.73903 4.81079 4.88976 4.91294 5.04333 5.22130 5.47794 5.75193 5.83973 5.91293 6.03361 6.15791 6.36614 6.59379 6.68442 6.82582 7.00361 8.20336 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.002320 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.269917 B =12064.823819 C =12172.416374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.049 3.951 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.250 1.250 7 C -0.481 4.481 8 H 0.064 0.936 9 C 0.072 3.928 10 C -0.229 4.229 11 C -0.089 4.089 12 C -0.168 4.168 13 C -0.061 4.061 14 C 0.398 3.602 15 O -0.515 6.515 16 N -0.551 5.551 17 C 0.052 3.948 18 C 0.103 3.897 19 H 0.087 0.913 20 C -0.626 4.626 21 S 2.425 3.575 22 O -0.969 6.969 23 O -0.972 6.972 24 C -0.623 4.623 25 C 0.060 3.940 26 O -0.383 6.383 27 C -0.190 4.190 28 H 0.293 0.707 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.413 0.587 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.160 0.840 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.031 -10.619 -1.224 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.165 4.165 3 Si 0.782 3.218 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.174 1.174 7 C -0.511 4.511 8 H 0.082 0.918 9 C 0.069 3.931 10 C -0.249 4.249 11 C -0.107 4.107 12 C -0.188 4.188 13 C -0.063 4.063 14 C 0.174 3.826 15 O -0.314 6.314 16 N -0.287 5.287 17 C -0.078 4.078 18 C 0.044 3.956 19 H 0.105 0.895 20 C -0.756 4.756 21 S 2.612 3.388 22 O -0.966 6.966 23 O -0.969 6.969 24 C -0.755 4.755 25 C -0.017 4.017 26 O -0.302 6.302 27 C -0.212 4.212 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.271 0.729 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.179 0.821 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.178 0.822 39 H 0.148 0.852 40 H 0.096 0.904 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.642 -10.715 -1.775 20.717 hybrid contribution -1.727 0.255 0.834 1.935 sum 15.915 -10.460 -0.941 19.068 Atomic orbital electron populations 1.69720 1.09150 1.31397 1.37228 1.26753 0.95237 1.04068 0.90486 0.85592 0.79806 0.76945 0.79476 1.18336 1.20828 1.17391 1.19434 0.94233 0.95739 1.41696 0.91785 1.17679 0.92638 0.92127 0.90634 1.21371 0.96818 1.03947 1.02739 1.20984 0.92731 0.98105 0.98899 1.20844 0.99890 0.97347 1.00743 1.18624 0.91898 0.96206 0.99549 1.22309 0.90514 0.85353 0.84424 1.84793 1.33954 1.54026 1.58618 1.72974 1.00507 1.26138 1.29056 1.22008 0.97692 0.92780 0.95299 1.21924 0.86372 0.91080 0.96197 0.89536 1.30840 1.11469 1.14071 1.19220 1.07570 0.78264 0.75713 0.77289 1.93570 1.70117 1.71286 1.61667 1.93568 1.74993 1.49535 1.78804 1.30744 1.19432 1.09064 1.16237 1.22588 1.03193 0.89415 0.86524 1.87874 1.34152 1.68501 1.39652 1.21179 0.91837 1.03838 1.04297 0.89673 0.88191 0.84985 0.85225 0.72865 0.91965 0.87126 0.82140 0.81585 0.81444 0.82173 0.85207 0.90368 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.35 13.93 21.82 0.30 -44.05 16 2 C 0.05 2.49 5.40 85.25 0.46 2.95 16 3 Si 0.96 40.19 24.52 68.60 1.68 41.87 16 4 H -0.26 -10.24 6.71 99.48 0.67 -9.57 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.25 -10.64 6.86 99.48 0.68 -9.96 16 7 C -0.48 -24.81 9.57 23.47 0.22 -24.58 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 9 C 0.07 3.31 5.10 -21.32 -0.11 3.20 16 10 C -0.23 -9.93 7.17 22.76 0.16 -9.76 16 11 C -0.09 -3.35 10.01 22.18 0.22 -3.13 16 12 C -0.17 -6.14 9.58 22.69 0.22 -5.92 16 13 C -0.06 -2.25 5.87 -20.13 -0.12 -2.36 16 14 C 0.40 12.89 7.93 87.57 0.69 13.59 16 15 O -0.52 -14.56 12.00 -85.17 -1.02 -15.58 16 16 N -0.55 -16.92 9.50 -455.48 -4.33 -21.25 16 17 C 0.05 1.24 6.02 86.38 0.52 1.76 16 18 C 0.10 2.05 2.75 30.68 0.08 2.13 16 19 H 0.09 1.72 7.99 -2.39 -0.02 1.70 16 20 C -0.63 -8.23 5.91 72.07 0.43 -7.80 16 21 S 2.43 37.42 5.36 -56.49 -0.30 37.12 16 22 O -0.97 -21.74 18.10 -127.41 -2.31 -24.04 16 23 O -0.97 -21.25 18.11 -127.41 -2.31 -23.56 16 24 C -0.62 -6.55 6.63 72.07 0.48 -6.07 16 25 C 0.06 0.91 6.67 72.07 0.48 1.39 16 26 O -0.38 -8.31 9.99 -148.98 -1.49 -9.79 16 27 C -0.19 -7.58 9.23 22.99 0.21 -7.37 16 28 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 29 H 0.10 4.36 4.73 -2.91 -0.01 4.34 16 30 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 31 H 0.13 4.37 7.54 -2.91 -0.02 4.35 16 32 H 0.41 9.52 6.64 -74.06 -0.49 9.02 16 33 H 0.06 1.51 6.74 -2.38 -0.02 1.49 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.17 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.17 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.16 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.13 7.99 -2.39 -0.02 1.11 16 41 H 0.12 4.24 6.28 -2.91 -0.02 4.22 16 Total: -1.00 -70.26 351.17 -5.29 -75.55 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.52 Total: 25.72 kcal Atomic # 6 Polarization: -45.94 SS G_CDS: 3.96 Total: -41.98 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -4.02 Total: -65.30 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -7.12 Total: -72.98 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.68 Total: 41.87 kcal Atomic # 16 Polarization: 37.42 SS G_CDS: -0.30 Total: 37.12 kcal Total: -70.26 -5.29 -75.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329102228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.637 kcal (2) G-P(sol) polarization free energy of solvation -70.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds