Wall clock time and date at job start Tue Mar 31 2020 21:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48501 * 109.46469 * 85.84979 * 3 2 1 5 5 H 1.48497 * 109.46824 * 205.84497 * 3 2 1 6 6 H 1.48497 * 109.47134 * 325.84800 * 3 2 1 7 7 C 1.37873 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00222 * 3.10288 * 7 2 1 9 9 C 1.50696 * 120.00052 * 183.10824 * 7 2 1 10 10 C 1.52997 * 115.55311 * 271.71277 * 9 7 2 11 11 S 1.81403 * 109.47073 * 294.26627 * 10 9 7 12 12 O 1.42094 * 110.53945 * 297.56436 * 11 10 9 13 13 O 1.42101 * 110.54460 * 74.31689 * 11 10 9 14 14 N 1.65604 * 104.44830 * 185.94283 * 11 10 9 15 15 C 1.46504 * 119.99971 * 64.99801 * 14 11 10 16 16 C 1.50701 * 109.46919 * 164.99794 * 15 14 11 17 17 C 1.38277 * 119.98564 * 259.72702 * 16 15 14 18 18 C 1.38219 * 120.14035 * 179.68264 * 17 16 15 19 19 C 1.38272 * 120.14075 * 0.64543 * 18 17 16 20 20 C 1.38505 * 120.03342 * 359.63719 * 19 18 17 21 21 C 1.38510 * 119.98165 * 79.99745 * 16 15 14 22 22 O 1.36492 * 131.54648 * 0.02656 * 21 16 15 23 23 C 1.43986 * 105.49128 * 162.67725 * 22 21 16 24 24 O 1.36495 * 131.53859 * 180.02562 * 20 19 18 25 25 C 1.53004 * 117.50212 * 126.04085 * 9 7 2 26 26 C 1.53001 * 117.50027 * 57.38159 * 9 7 2 27 27 H 0.96995 * 120.00032 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46917 * 54.26595 * 10 9 7 29 29 H 1.09000 * 109.47712 * 174.25892 * 10 9 7 30 30 H 0.97001 * 119.99521 * 244.99831 * 14 11 10 31 31 H 1.08992 * 109.47081 * 284.99548 * 15 14 11 32 32 H 1.09003 * 109.46868 * 45.00360 * 15 14 11 33 33 H 1.08000 * 119.92794 * 0.02562 * 17 16 15 34 34 H 1.08000 * 119.92406 * 180.28464 * 18 17 16 35 35 H 1.08007 * 119.98385 * 179.65822 * 19 18 17 36 36 H 1.09002 * 110.57016 * 268.56537 * 23 22 21 37 37 H 1.08992 * 110.69720 * 145.75222 * 23 22 21 38 38 H 1.09000 * 117.49349 * 0.02562 * 25 9 7 39 39 H 1.09000 * 117.50173 * 145.01820 * 25 9 7 40 40 H 1.09003 * 117.50248 * 214.98189 * 26 9 7 41 41 H 1.09003 * 117.49999 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4088 2.0970 1.3965 5 1 3.5878 1.4165 -0.6103 6 1 1.4932 2.6258 -0.7860 7 6 2.0046 -1.1940 -0.0005 8 1 1.4658 -2.1286 -0.0516 9 6 3.5099 -1.1950 0.0702 10 6 4.2339 -1.1161 -1.2753 11 16 3.9040 -2.6237 -2.2287 12 8 4.4130 -3.7639 -1.5504 13 8 2.5797 -2.6083 -2.7437 14 7 4.8654 -2.4833 -3.5697 15 6 6.3237 -2.4863 -3.4291 16 6 6.9578 -2.7173 -4.7766 17 6 7.4215 -3.9750 -5.1157 18 6 7.9977 -4.1919 -6.3532 19 6 8.1248 -3.1491 -7.2523 20 6 7.6678 -1.8853 -6.9172 21 6 7.0808 -1.6682 -5.6726 22 8 6.7177 -0.3554 -5.5848 23 6 7.4552 0.3178 -6.6221 24 8 7.6722 -0.7084 -7.6086 25 6 4.1646 -2.0238 1.1772 26 6 4.1614 -0.4956 1.2650 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.2494 -1.8305 29 1 5.3064 -1.0207 -1.1059 30 1 4.4630 -2.3989 -4.4483 31 1 6.6525 -1.5258 -3.0327 32 1 6.6212 -3.2823 -2.7464 33 1 7.3283 -4.7909 -4.4142 34 1 8.3545 -5.1768 -6.6162 35 1 8.5804 -3.3202 -8.2165 36 1 8.4061 0.6870 -6.2381 37 1 6.8697 1.1354 -7.0425 38 1 3.5065 -2.5688 1.8539 39 1 5.1113 -2.5127 0.9469 40 1 5.1060 0.0203 1.0924 41 1 3.5013 -0.0345 1.9996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329584884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:07 Heat of formation + Delta-G solvation = -73.208663 kcal Electronic energy + Delta-G solvation = -27545.737410 eV Core-core repulsion = 23520.280084 eV Total energy + Delta-G solvation = -4025.457326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.46708 -38.50598 -37.13736 -36.68774 -36.33341 -35.24153 -35.00782 -32.15550 -30.94566 -30.25034 -28.49905 -26.15122 -25.85759 -25.52452 -23.22830 -22.01581 -21.72861 -19.67344 -18.72080 -18.33181 -17.99892 -17.60252 -17.06002 -16.62732 -16.44081 -15.98341 -15.29921 -15.00659 -14.83600 -14.56612 -14.40475 -14.30625 -13.90009 -13.69397 -13.25137 -13.15535 -13.02012 -12.90345 -12.62118 -12.42278 -12.29542 -11.76310 -11.40040 -11.30408 -11.25135 -11.21915 -11.04870 -10.96039 -10.64690 -10.38298 -10.12921 -9.71738 -9.35539 -9.15797 -9.10511 -8.66311 -8.45737 -8.38292 -6.15887 -4.23801 0.70793 0.84601 1.04943 2.46569 3.13589 3.15413 3.22920 3.32949 3.35691 3.50452 4.04386 4.35164 4.35918 4.40037 4.53185 4.60173 4.76204 4.78828 4.81335 4.89137 4.93474 5.05943 5.11850 5.28678 5.30422 5.45191 5.66409 5.66899 5.77375 5.89995 5.97278 6.01187 6.05392 6.10145 6.13320 6.20432 6.42311 6.65735 6.81199 6.88581 7.05895 7.16752 7.59888 8.37647 8.89222 9.45043 10.95557 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.003544 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.640773 B = 7899.188383 C = 8684.098138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.088 3.912 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.255 1.255 6 H -0.291 1.291 7 C -0.509 4.509 8 H 0.087 0.913 9 C 0.001 3.999 10 C -0.574 4.574 11 S 2.615 3.385 12 O -0.966 6.966 13 O -0.939 6.939 14 N -1.127 6.127 15 C 0.160 3.840 16 C -0.075 4.075 17 C -0.092 4.092 18 C -0.111 4.111 19 C -0.098 4.098 20 C 0.027 3.973 21 C 0.047 3.953 22 O -0.300 6.300 23 C 0.212 3.788 24 O -0.310 6.310 25 C -0.177 4.177 26 C -0.185 4.185 27 H 0.267 0.733 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.414 0.586 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.457 -2.467 -13.142 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.117 4.117 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.180 1.180 6 H -0.217 1.217 7 C -0.546 4.546 8 H 0.105 0.895 9 C -0.001 4.001 10 C -0.706 4.706 11 S 2.710 3.290 12 O -0.957 6.957 13 O -0.929 6.929 14 N -0.884 5.884 15 C 0.034 3.966 16 C -0.078 4.078 17 C -0.111 4.111 18 C -0.129 4.129 19 C -0.117 4.117 20 C -0.017 4.017 21 C 0.002 3.998 22 O -0.216 6.216 23 C 0.100 3.900 24 O -0.226 6.226 25 C -0.214 4.214 26 C -0.224 4.224 27 H 0.077 0.923 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.247 0.753 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.150 0.850 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.649 -2.920 -12.872 23.671 hybrid contribution 0.622 2.113 -0.452 2.249 sum 20.271 -0.807 -13.324 24.272 Atomic orbital electron populations 1.69893 1.06401 1.27306 1.48211 1.24957 0.94543 0.98987 0.93180 0.86916 0.80884 0.83486 0.78603 1.20189 1.17957 1.21729 1.20348 0.85718 0.95460 1.53072 0.89510 1.18861 0.94939 1.02645 0.83703 1.30278 1.07220 1.20982 1.12141 1.04961 0.73364 0.77063 0.73607 1.93500 1.80757 1.46596 1.74801 1.93604 1.34663 1.87281 1.77313 1.56079 1.14832 1.92490 1.25030 1.20072 0.80116 1.02624 0.93835 1.18941 1.02370 0.91241 0.95205 1.21022 0.97571 0.95276 0.97241 1.20946 1.00082 0.98634 0.93262 1.20124 1.01365 0.88784 1.01405 1.19810 1.02367 0.89245 0.90310 1.19653 0.99497 0.85720 0.94930 1.87448 1.63491 1.16666 1.53953 1.25663 0.96589 0.90143 0.77615 1.87366 1.89268 1.13862 1.32120 1.23031 1.01477 0.92938 1.03935 1.22984 1.01121 0.95088 1.03194 0.92297 0.85443 0.87697 0.75303 0.90976 0.88860 0.83812 0.84172 0.84721 0.89824 0.85004 0.88630 0.89967 0.90671 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.94 13.96 55.43 0.77 -26.16 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 3 Si 0.87 21.14 24.90 -169.99 -4.23 16.91 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.26 -5.68 5.70 56.52 0.32 -5.36 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.51 -14.29 8.80 -34.44 -0.30 -14.60 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.00 0.03 0.77 -155.66 -0.12 -0.09 16 10 C -0.57 -11.23 5.52 37.16 0.21 -11.02 16 11 S 2.61 51.14 5.21 -107.50 -0.56 50.58 16 12 O -0.97 -20.05 17.50 -57.54 -1.01 -21.06 16 13 O -0.94 -22.57 17.75 -57.54 -1.02 -23.59 16 14 N -1.13 -16.67 5.88 -11.65 -0.07 -16.73 16 15 C 0.16 1.93 6.26 -5.19 -0.03 1.90 16 16 C -0.08 -0.83 5.29 -104.51 -0.55 -1.39 16 17 C -0.09 -0.83 9.66 -39.57 -0.38 -1.21 16 18 C -0.11 -0.84 10.04 -39.58 -0.40 -1.24 16 19 C -0.10 -0.84 10.06 -39.47 -0.40 -1.24 16 20 C 0.03 0.29 7.15 -39.08 -0.28 0.01 16 21 C 0.05 0.55 6.85 -39.08 -0.27 0.29 16 22 O -0.30 -3.54 11.39 -45.66 -0.52 -4.06 16 23 C 0.21 1.77 8.89 101.05 0.90 2.67 16 24 O -0.31 -3.27 11.40 -45.67 -0.52 -3.79 16 25 C -0.18 -3.60 9.96 -26.69 -0.27 -3.86 16 26 C -0.19 -3.81 7.55 -26.69 -0.20 -4.02 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.13 2.50 6.76 -51.92 -0.35 2.15 16 29 H 0.10 1.62 8.09 -51.92 -0.42 1.20 16 30 H 0.41 5.78 8.61 -34.47 -0.30 5.49 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.03 7.55 -51.93 -0.39 0.64 16 33 H 0.14 1.06 8.03 -52.49 -0.42 0.64 16 34 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 1.98 7.23 -51.93 -0.38 1.61 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -36.55 357.77 -9.23 -45.78 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.28 Total: 8.10 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: -2.19 Total: -31.38 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.71 Total: -42.90 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -3.07 Total: -52.50 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.23 Total: 16.91 kcal Atomic # 16 Polarization: 51.14 SS G_CDS: -0.56 Total: 50.58 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.55 -9.23 -45.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329584884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.427 kcal (2) G-P(sol) polarization free energy of solvation -36.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds