Wall clock time and date at job start Tue Mar 31 2020 21:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48501 * 109.46469 * 85.84979 * 3 2 1 5 5 H 1.48497 * 109.46824 * 205.84497 * 3 2 1 6 6 H 1.48497 * 109.47134 * 325.84800 * 3 2 1 7 7 C 1.37873 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00222 * 3.10288 * 7 2 1 9 9 C 1.50696 * 120.00052 * 183.10824 * 7 2 1 10 10 C 1.52997 * 115.55311 * 271.71277 * 9 7 2 11 11 S 1.81403 * 109.47073 * 294.26627 * 10 9 7 12 12 O 1.42094 * 110.53945 * 297.56436 * 11 10 9 13 13 O 1.42101 * 110.54460 * 74.31689 * 11 10 9 14 14 N 1.65604 * 104.44830 * 185.94283 * 11 10 9 15 15 C 1.46504 * 119.99971 * 64.99801 * 14 11 10 16 16 C 1.50701 * 109.46919 * 164.99794 * 15 14 11 17 17 C 1.38277 * 119.98564 * 259.72702 * 16 15 14 18 18 C 1.38219 * 120.14035 * 179.68264 * 17 16 15 19 19 C 1.38272 * 120.14075 * 0.64543 * 18 17 16 20 20 C 1.38505 * 120.03342 * 359.63719 * 19 18 17 21 21 C 1.38510 * 119.98165 * 79.99745 * 16 15 14 22 22 O 1.36492 * 131.54648 * 0.02656 * 21 16 15 23 23 C 1.43986 * 105.49128 * 162.67725 * 22 21 16 24 24 O 1.36495 * 131.53859 * 180.02562 * 20 19 18 25 25 C 1.53004 * 117.50212 * 126.04085 * 9 7 2 26 26 C 1.53001 * 117.50027 * 57.38159 * 9 7 2 27 27 H 0.96995 * 120.00032 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46917 * 54.26595 * 10 9 7 29 29 H 1.09000 * 109.47712 * 174.25892 * 10 9 7 30 30 H 0.97001 * 119.99521 * 244.99831 * 14 11 10 31 31 H 1.08992 * 109.47081 * 284.99548 * 15 14 11 32 32 H 1.09003 * 109.46868 * 45.00360 * 15 14 11 33 33 H 1.08000 * 119.92794 * 0.02562 * 17 16 15 34 34 H 1.08000 * 119.92406 * 180.28464 * 18 17 16 35 35 H 1.08007 * 119.98385 * 179.65822 * 19 18 17 36 36 H 1.09002 * 110.57016 * 268.56537 * 23 22 21 37 37 H 1.08992 * 110.69720 * 145.75222 * 23 22 21 38 38 H 1.09000 * 117.49349 * 0.02562 * 25 9 7 39 39 H 1.09000 * 117.50173 * 145.01820 * 25 9 7 40 40 H 1.09003 * 117.50248 * 214.98189 * 26 9 7 41 41 H 1.09003 * 117.49999 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4088 2.0970 1.3965 5 1 3.5878 1.4165 -0.6103 6 1 1.4932 2.6258 -0.7860 7 6 2.0046 -1.1940 -0.0005 8 1 1.4658 -2.1286 -0.0516 9 6 3.5099 -1.1950 0.0702 10 6 4.2339 -1.1161 -1.2753 11 16 3.9040 -2.6237 -2.2287 12 8 4.4130 -3.7639 -1.5504 13 8 2.5797 -2.6083 -2.7437 14 7 4.8654 -2.4833 -3.5697 15 6 6.3237 -2.4863 -3.4291 16 6 6.9578 -2.7173 -4.7766 17 6 7.4215 -3.9750 -5.1157 18 6 7.9977 -4.1919 -6.3532 19 6 8.1248 -3.1491 -7.2523 20 6 7.6678 -1.8853 -6.9172 21 6 7.0808 -1.6682 -5.6726 22 8 6.7177 -0.3554 -5.5848 23 6 7.4552 0.3178 -6.6221 24 8 7.6722 -0.7084 -7.6086 25 6 4.1646 -2.0238 1.1772 26 6 4.1614 -0.4956 1.2650 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.2494 -1.8305 29 1 5.3064 -1.0207 -1.1059 30 1 4.4630 -2.3989 -4.4483 31 1 6.6525 -1.5258 -3.0327 32 1 6.6212 -3.2823 -2.7464 33 1 7.3283 -4.7909 -4.4142 34 1 8.3545 -5.1768 -6.6162 35 1 8.5804 -3.3202 -8.2165 36 1 8.4061 0.6870 -6.2381 37 1 6.8697 1.1354 -7.0425 38 1 3.5065 -2.5688 1.8539 39 1 5.1113 -2.5127 0.9469 40 1 5.1060 0.0203 1.0924 41 1 3.5013 -0.0345 1.9996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329584884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:07 Heat of formation + Delta-G solvation = -102.112808 kcal Electronic energy + Delta-G solvation = -27546.990788 eV Core-core repulsion = 23520.280084 eV Total energy + Delta-G solvation = -4026.710704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.15480 -39.21993 -38.84942 -37.99065 -37.41125 -36.84138 -36.05849 -34.29802 -31.78193 -30.90745 -30.07970 -27.61831 -26.83526 -26.68173 -23.91444 -23.34844 -22.77542 -21.39241 -20.26976 -19.07554 -18.79532 -18.62019 -18.46321 -18.13114 -17.32372 -17.10294 -17.00763 -16.63558 -15.81576 -15.59947 -15.52113 -15.25684 -15.15724 -14.83144 -14.59570 -14.53615 -13.98858 -13.92244 -13.82459 -13.72128 -13.21595 -13.17451 -12.98490 -12.95697 -12.88682 -12.70885 -12.39770 -12.04593 -11.99386 -11.84637 -11.77549 -11.66586 -10.99261 -10.73123 -10.58701 -10.11918 -9.82048 -9.07693 -8.32726 -6.46102 -0.61735 0.14433 0.16369 1.34172 1.36478 1.49899 1.81207 1.99534 2.34898 2.52664 2.61691 2.89658 2.99019 3.15147 3.28543 3.42206 3.74562 3.80599 3.84856 3.98229 4.13123 4.17504 4.22486 4.30265 4.34144 4.37669 4.44114 4.47113 4.56304 4.62635 4.82801 4.87011 5.01871 5.05245 5.12514 5.23046 5.36042 5.43579 5.46770 5.50320 5.61635 6.00606 6.12551 6.19200 6.65854 7.26746 8.83646 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.003544 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.640773 B = 7899.188383 C = 8684.098138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.262 1.262 5 H -0.215 1.215 6 H -0.296 1.296 7 C -0.513 4.513 8 H 0.028 0.972 9 C -0.035 4.035 10 C -0.571 4.571 11 S 2.623 3.377 12 O -0.984 6.984 13 O -0.999 6.999 14 N -1.114 6.114 15 C 0.150 3.850 16 C -0.090 4.090 17 C -0.097 4.097 18 C -0.102 4.102 19 C -0.097 4.097 20 C 0.007 3.993 21 C 0.028 3.972 22 O -0.323 6.323 23 C 0.203 3.797 24 O -0.324 6.324 25 C -0.170 4.170 26 C -0.169 4.169 27 H 0.268 0.732 28 H 0.128 0.872 29 H 0.158 0.842 30 H 0.417 0.583 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.106 0.894 37 H 0.153 0.847 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.867 -1.690 -13.714 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.175 4.175 3 Si 0.757 3.243 4 H -0.187 1.187 5 H -0.137 1.137 6 H -0.223 1.223 7 C -0.550 4.550 8 H 0.047 0.953 9 C -0.038 4.038 10 C -0.703 4.703 11 S 2.720 3.280 12 O -0.973 6.973 13 O -0.989 6.989 14 N -0.874 5.874 15 C 0.025 3.975 16 C -0.093 4.093 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.037 4.037 21 C -0.017 4.017 22 O -0.239 6.239 23 C 0.093 3.907 24 O -0.241 6.241 25 C -0.207 4.207 26 C -0.207 4.207 27 H 0.077 0.923 28 H 0.147 0.853 29 H 0.175 0.825 30 H 0.252 0.748 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.177 0.823 34 H 0.191 0.809 35 H 0.174 0.826 36 H 0.123 0.877 37 H 0.170 0.830 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 24.088 -2.176 -13.442 27.671 hybrid contribution -0.721 1.724 -0.320 1.896 sum 23.367 -0.452 -13.762 27.123 Atomic orbital electron populations 1.70069 1.08763 1.28413 1.50873 1.25975 0.95302 1.03463 0.92772 0.85950 0.81142 0.77718 0.79518 1.18730 1.13673 1.22347 1.20489 0.89109 0.93247 1.52157 0.95330 1.18778 0.92222 1.06465 0.86326 1.30134 1.10043 1.20355 1.09789 1.04362 0.72443 0.77152 0.74010 1.93465 1.80697 1.47596 1.75578 1.93530 1.38651 1.88095 1.78609 1.55634 1.15991 1.92226 1.23541 1.20381 0.77920 1.04035 0.95132 1.18980 1.03426 0.92026 0.94831 1.21331 0.97086 0.94921 0.98185 1.21344 0.98619 0.99759 0.92245 1.20535 1.00481 0.88154 1.02443 1.20142 1.03192 0.90012 0.90351 1.19864 1.00304 0.85886 0.95627 1.87390 1.64432 1.17040 1.55050 1.26070 0.97877 0.89819 0.76980 1.87328 1.89485 1.14309 1.33000 1.23123 1.02178 0.93498 1.01915 1.23098 1.02057 0.95186 1.00399 0.92298 0.85348 0.82450 0.74848 0.89426 0.87689 0.82294 0.80890 0.82640 0.87670 0.82959 0.90159 0.86555 0.86327 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.52 13.96 21.45 0.30 -60.22 16 2 C 0.02 1.39 5.47 84.65 0.46 1.85 16 3 Si 0.93 42.78 24.90 68.60 1.71 44.49 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.21 -8.35 5.70 99.48 0.57 -7.78 16 6 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.51 -29.79 8.80 25.60 0.23 -29.56 16 8 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 9 C -0.04 -1.57 0.77 -52.93 -0.04 -1.61 16 10 C -0.57 -20.67 5.52 71.98 0.40 -20.27 16 11 S 2.62 101.41 5.21 -56.49 -0.29 101.11 16 12 O -0.98 -39.96 17.50 -127.65 -2.23 -42.20 16 13 O -1.00 -50.10 17.75 -127.65 -2.27 -52.36 16 14 N -1.11 -31.43 5.88 -190.79 -1.12 -32.55 16 15 C 0.15 3.23 6.26 85.63 0.54 3.77 16 16 C -0.09 -1.81 5.29 -19.79 -0.10 -1.91 16 17 C -0.10 -1.48 9.66 22.27 0.22 -1.26 16 18 C -0.10 -1.21 10.04 22.27 0.22 -0.99 16 19 C -0.10 -1.42 10.06 22.34 0.22 -1.19 16 20 C 0.01 0.14 7.15 22.59 0.16 0.30 16 21 C 0.03 0.62 6.85 22.59 0.15 0.77 16 22 O -0.32 -7.15 11.39 -75.96 -0.87 -8.02 16 23 C 0.20 3.07 8.89 113.37 1.01 4.08 16 24 O -0.32 -6.42 11.40 -75.99 -0.87 -7.29 16 25 C -0.17 -6.52 9.96 30.62 0.30 -6.22 16 26 C -0.17 -6.30 7.55 30.62 0.23 -6.07 16 27 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 28 H 0.13 4.66 6.76 -2.39 -0.02 4.65 16 29 H 0.16 3.97 8.09 -2.39 -0.02 3.95 16 30 H 0.42 11.47 8.61 -96.74 -0.83 10.64 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.99 7.55 -2.39 -0.02 1.98 16 33 H 0.16 1.86 8.03 -2.91 -0.02 1.84 16 34 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.08 3.17 7.23 -2.39 -0.02 3.15 16 Total: -1.00 -85.20 357.77 -1.54 -86.74 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.10 Total: 28.59 kcal Atomic # 6 Polarization: -62.30 SS G_CDS: 4.00 Total: -58.30 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -0.82 Total: -92.77 kcal Atomic # 8 Polarization: -103.63 SS G_CDS: -6.23 Total: -109.86 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.71 Total: 44.49 kcal Atomic # 16 Polarization: 101.41 SS G_CDS: -0.29 Total: 101.11 kcal Total: -85.20 -1.54 -86.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329584884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.373 kcal (2) G-P(sol) polarization free energy of solvation -85.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds