Wall clock time and date at job start Tue Mar 31 2020 22:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30305 * 126.34163 * 2 1 4 4 N 1.28524 * 110.07735 * 179.97438 * 3 2 1 5 5 C 1.31279 * 109.86182 * 0.02562 * 4 3 2 6 6 S 1.76195 * 126.48930 * 179.97438 * 5 4 3 7 7 C 1.81010 * 99.99670 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.46965 * 180.02562 * 7 6 5 9 9 H 1.08992 * 109.47279 * 305.00190 * 8 7 6 10 10 O 1.42906 * 109.47182 * 65.00553 * 8 7 6 11 11 C 1.50698 * 109.47024 * 184.99817 * 8 7 6 12 12 H 1.07996 * 120.00122 * 0.02562 * 11 8 7 13 13 C 1.37878 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99993 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99937 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.47169 * 60.00178 * 15 13 11 17 17 H 1.48503 * 109.47228 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47396 * 299.99943 * 15 13 11 19 19 N 1.36542 * 107.03065 * 359.97438 * 5 4 3 20 20 C 1.46500 * 127.14580 * 179.97438 * 19 5 4 21 21 C 1.53007 * 109.46824 * 90.02439 * 20 19 5 22 22 C 1.50701 * 109.46841 * 179.97438 * 21 20 19 23 23 C 1.33391 * 125.19813 * 90.00659 * 22 21 20 24 24 C 1.38426 * 114.92088 * 179.97438 * 23 22 21 25 25 C 1.33394 * 114.91879 * 0.02562 * 24 23 22 26 26 S 1.75882 * 125.20795 * 269.69610 * 22 21 20 27 27 H 1.08994 * 109.46858 * 90.02796 * 1 2 3 28 28 H 1.09001 * 109.46950 * 210.02557 * 1 2 3 29 29 H 1.08998 * 109.46965 * 330.02675 * 1 2 3 30 30 H 1.09000 * 109.47234 * 300.00111 * 7 6 5 31 31 H 1.08999 * 109.46701 * 60.00433 * 7 6 5 32 32 H 0.96697 * 114.00216 * 59.99578 * 10 8 7 33 33 H 0.96998 * 120.00053 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47704 * 210.02411 * 20 19 5 35 35 H 1.09003 * 109.47057 * 330.03300 * 20 19 5 36 36 H 1.08995 * 109.47198 * 299.99967 * 21 20 19 37 37 H 1.09003 * 109.46601 * 60.00582 * 21 20 19 38 38 H 1.07997 * 122.53958 * 359.95246 * 23 22 21 39 39 H 1.07996 * 122.54293 * 180.02562 * 24 23 22 40 40 H 1.07995 * 125.20037 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5954 -0.6206 0.0004 6 16 5.0749 -1.5774 0.0003 7 6 6.3068 -0.2512 0.0013 8 6 7.7107 -0.8593 0.0008 9 1 7.8099 -1.5452 0.8419 10 8 7.9215 -1.5700 -1.2210 11 6 8.7342 0.2398 0.1254 12 1 8.4152 1.2690 0.1982 13 6 10.0779 -0.0686 0.1465 14 7 10.4664 -1.3219 0.0574 15 14 11.3465 1.2938 0.3017 16 1 11.1277 2.0315 1.5719 17 1 12.7093 0.7037 0.2998 18 1 11.2111 2.2291 -0.8436 19 7 2.3175 -1.1016 0.0002 20 6 1.9010 -2.5061 -0.0005 21 6 1.7556 -2.9957 1.4419 22 6 1.3265 -4.4403 1.4411 23 6 2.1525 -5.4877 1.4409 24 6 1.5280 -6.7231 1.4407 25 6 0.1947 -6.6788 1.4403 26 16 -0.3398 -5.0032 1.4482 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 6.1778 0.3652 -0.8884 31 1 6.1773 0.3642 0.8916 32 1 7.8482 -1.0206 -2.0133 33 1 11.4117 -1.5388 0.0718 34 1 0.9446 -2.6013 -0.5146 35 1 2.6512 -3.1073 -0.5142 36 1 2.7119 -2.9006 1.9560 37 1 1.0054 -2.3945 1.9556 38 1 3.2271 -5.3801 1.4404 39 1 2.0783 -7.6523 1.4409 40 1 -0.4567 -7.5402 1.4405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352165746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:23 Heat of formation + Delta-G solvation = 50.382805 kcal Electronic energy + Delta-G solvation = -23652.607596 eV Core-core repulsion = 20107.555220 eV Total energy + Delta-G solvation = -3545.052376 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.77057 -38.40197 -36.05273 -35.86294 -32.60273 -32.21164 -32.16275 -29.82042 -28.38770 -27.70629 -25.34347 -25.06778 -23.06617 -22.43625 -21.30959 -20.52408 -19.58630 -17.86561 -17.39544 -17.13079 -16.28223 -16.09531 -15.71184 -14.95573 -14.66771 -14.41279 -14.32955 -13.98810 -13.88993 -13.64640 -13.32341 -13.19728 -13.00050 -12.78427 -12.62065 -12.57041 -12.39091 -11.63777 -11.61001 -11.43893 -11.23114 -11.08493 -10.93717 -10.90578 -10.56635 -10.33044 -10.18979 -9.87996 -9.61809 -9.22432 -9.01030 -8.82136 -8.64957 -8.36056 -7.25795 -6.09146 -4.28580 0.60212 1.24736 1.44263 1.62701 1.71790 2.39412 2.57456 2.76422 2.93249 3.28087 3.32717 3.36059 4.20400 4.26349 4.35319 4.44432 4.51898 4.72904 4.77572 4.83736 5.05382 5.18260 5.20335 5.22989 5.30877 5.39569 5.52006 5.58820 5.78893 5.84245 5.84727 5.95206 6.01956 6.07771 6.15327 6.17864 6.67699 6.75089 7.50129 7.75268 8.00809 8.72659 8.78501 9.24439 9.47379 10.94982 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002725 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.782475 B =10271.331559 C =11987.834669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.287 5.287 4 N -0.295 5.295 5 C 0.167 3.833 6 S -0.012 6.012 7 C -0.110 4.110 8 C 0.245 3.755 9 H 0.067 0.933 10 O -0.560 6.560 11 C -0.568 4.568 12 H 0.061 0.939 13 C 0.081 3.919 14 N -0.858 5.858 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.468 5.468 20 C 0.114 3.886 21 C -0.063 4.063 22 C -0.177 4.177 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.212 4.212 26 S 0.092 5.908 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.349 0.651 33 H 0.263 0.737 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.857 -9.762 1.690 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 N -0.127 5.127 4 N -0.139 5.139 5 C -0.206 4.206 6 S 0.218 5.782 7 C -0.259 4.259 8 C 0.185 3.815 9 H 0.084 0.916 10 O -0.363 6.363 11 C -0.608 4.608 12 H 0.079 0.921 13 C -0.126 4.126 14 N -0.493 5.493 15 Si 0.722 3.278 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.164 5.164 20 C -0.010 4.010 21 C -0.104 4.104 22 C -0.295 4.295 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.347 4.347 26 S 0.355 5.645 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.194 0.806 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -24.491 -9.440 2.112 26.332 hybrid contribution 1.379 0.426 -0.216 1.459 sum -23.112 -9.014 1.897 24.880 Atomic orbital electron populations 1.20165 0.83964 1.04213 1.03805 1.24992 0.96677 0.82575 1.06064 1.73930 0.96776 1.24090 1.17896 1.74747 1.11505 1.06872 1.20727 1.27396 0.91264 0.95635 1.06343 1.85821 0.89432 1.11219 1.91713 1.24909 0.97183 0.97608 1.06233 1.19235 0.84352 0.92261 0.85636 0.91565 1.86579 1.94366 1.39833 1.15498 1.21457 0.90994 0.93244 1.55129 0.92075 1.25026 0.98525 0.95481 0.93547 1.70063 1.16038 1.16981 1.46192 0.86623 0.80204 0.81981 0.78956 1.19982 1.21124 1.19974 1.46447 1.05134 1.07959 1.56816 1.21927 1.03096 0.78029 0.97931 1.20450 1.03840 0.89706 0.96372 1.24166 0.95860 0.98482 1.10975 1.20316 1.01658 0.91166 1.02561 1.20240 0.93709 0.99114 1.03102 1.25637 0.99057 0.99514 1.10504 1.84248 1.07060 0.99828 1.73375 0.89800 0.90766 0.88740 0.89617 0.88959 0.80635 0.92703 0.88371 0.87696 0.88376 0.89983 0.83569 0.83978 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.09 36.01 0.36 -0.14 16 2 C 0.17 2.27 8.07 -153.99 -1.24 1.03 16 3 N -0.29 -5.13 12.18 33.00 0.40 -4.73 16 4 N -0.30 -5.81 11.60 30.68 0.36 -5.45 16 5 C 0.17 2.89 8.07 -88.34 -0.71 2.17 16 6 S -0.01 -0.21 21.59 -107.50 -2.32 -2.53 16 7 C -0.11 -2.29 4.84 37.16 0.18 -2.11 16 8 C 0.25 6.00 2.82 -27.88 -0.08 5.92 16 9 H 0.07 1.77 8.14 -51.93 -0.42 1.34 16 10 O -0.56 -13.82 12.48 -35.23 -0.44 -14.25 16 11 C -0.57 -15.23 8.76 -34.44 -0.30 -15.53 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 14 N -0.86 -24.68 12.84 55.43 0.71 -23.96 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 N -0.47 -6.34 2.81 -113.53 -0.32 -6.66 16 20 C 0.11 1.10 5.74 -4.04 -0.02 1.08 16 21 C -0.06 -0.57 6.03 -27.88 -0.17 -0.73 16 22 C -0.18 -1.50 5.76 -36.00 -0.21 -1.71 16 23 C -0.13 -1.10 10.05 -41.21 -0.41 -1.51 16 24 C -0.13 -1.01 10.18 -41.21 -0.42 -1.43 16 25 C -0.21 -1.49 11.23 29.04 0.33 -1.16 16 26 S 0.09 0.67 23.33 -107.50 -2.51 -1.84 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.44 7.93 -51.93 -0.41 0.02 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 31 H 0.09 1.96 8.14 -51.92 -0.42 1.53 16 32 H 0.35 7.70 9.04 45.56 0.41 8.11 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.10 0.73 7.88 -51.93 -0.41 0.32 16 35 H 0.10 1.06 7.86 -51.93 -0.41 0.65 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -32.83 374.64 -10.87 -43.70 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.59 Total: 6.19 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.79 Total: -12.00 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 1.15 Total: -40.81 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.44 Total: -14.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -4.83 Total: -4.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.83 -10.87 -43.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352165746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.084 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds