Wall clock time and date at job start Tue Mar 31 2020 22:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30305 * 126.34163 * 2 1 4 4 N 1.28524 * 110.07735 * 179.97438 * 3 2 1 5 5 C 1.31279 * 109.86182 * 0.02562 * 4 3 2 6 6 S 1.76195 * 126.48930 * 179.97438 * 5 4 3 7 7 C 1.81010 * 99.99670 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.46965 * 180.02562 * 7 6 5 9 9 H 1.08992 * 109.47279 * 305.00190 * 8 7 6 10 10 O 1.42906 * 109.47182 * 65.00553 * 8 7 6 11 11 C 1.50698 * 109.47024 * 184.99817 * 8 7 6 12 12 H 1.07996 * 120.00122 * 0.02562 * 11 8 7 13 13 C 1.37878 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99993 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99937 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.47169 * 60.00178 * 15 13 11 17 17 H 1.48503 * 109.47228 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47396 * 299.99943 * 15 13 11 19 19 N 1.36542 * 107.03065 * 359.97438 * 5 4 3 20 20 C 1.46500 * 127.14580 * 179.97438 * 19 5 4 21 21 C 1.53007 * 109.46824 * 90.02439 * 20 19 5 22 22 C 1.50701 * 109.46841 * 179.97438 * 21 20 19 23 23 C 1.33391 * 125.19813 * 90.00659 * 22 21 20 24 24 C 1.38426 * 114.92088 * 179.97438 * 23 22 21 25 25 C 1.33394 * 114.91879 * 0.02562 * 24 23 22 26 26 S 1.75882 * 125.20795 * 269.69610 * 22 21 20 27 27 H 1.08994 * 109.46858 * 90.02796 * 1 2 3 28 28 H 1.09001 * 109.46950 * 210.02557 * 1 2 3 29 29 H 1.08998 * 109.46965 * 330.02675 * 1 2 3 30 30 H 1.09000 * 109.47234 * 300.00111 * 7 6 5 31 31 H 1.08999 * 109.46701 * 60.00433 * 7 6 5 32 32 H 0.96697 * 114.00216 * 59.99578 * 10 8 7 33 33 H 0.96998 * 120.00053 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47704 * 210.02411 * 20 19 5 35 35 H 1.09003 * 109.47057 * 330.03300 * 20 19 5 36 36 H 1.08995 * 109.47198 * 299.99967 * 21 20 19 37 37 H 1.09003 * 109.46601 * 60.00582 * 21 20 19 38 38 H 1.07997 * 122.53958 * 359.95246 * 23 22 21 39 39 H 1.07996 * 122.54293 * 180.02562 * 24 23 22 40 40 H 1.07995 * 125.20037 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5954 -0.6206 0.0004 6 16 5.0749 -1.5774 0.0003 7 6 6.3068 -0.2512 0.0013 8 6 7.7107 -0.8593 0.0008 9 1 7.8099 -1.5452 0.8419 10 8 7.9215 -1.5700 -1.2210 11 6 8.7342 0.2398 0.1254 12 1 8.4152 1.2690 0.1982 13 6 10.0779 -0.0686 0.1465 14 7 10.4664 -1.3219 0.0574 15 14 11.3465 1.2938 0.3017 16 1 11.1277 2.0315 1.5719 17 1 12.7093 0.7037 0.2998 18 1 11.2111 2.2291 -0.8436 19 7 2.3175 -1.1016 0.0002 20 6 1.9010 -2.5061 -0.0005 21 6 1.7556 -2.9957 1.4419 22 6 1.3265 -4.4403 1.4411 23 6 2.1525 -5.4877 1.4409 24 6 1.5280 -6.7231 1.4407 25 6 0.1947 -6.6788 1.4403 26 16 -0.3398 -5.0032 1.4482 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 6.1778 0.3652 -0.8884 31 1 6.1773 0.3642 0.8916 32 1 7.8482 -1.0206 -2.0133 33 1 11.4117 -1.5388 0.0718 34 1 0.9446 -2.6013 -0.5146 35 1 2.6512 -3.1073 -0.5142 36 1 2.7119 -2.9006 1.9560 37 1 1.0054 -2.3945 1.9556 38 1 3.2271 -5.3801 1.4404 39 1 2.0783 -7.6523 1.4409 40 1 -0.4567 -7.5402 1.4405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352165746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:22 Heat of formation + Delta-G solvation = 31.014337 kcal Electronic energy + Delta-G solvation = -23653.447476 eV Core-core repulsion = 20107.555220 eV Total energy + Delta-G solvation = -3545.892256 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.96868 -39.02731 -37.94290 -36.87863 -34.30263 -33.52579 -33.09612 -31.67076 -29.20220 -28.66634 -27.32820 -25.83064 -24.04681 -23.42050 -23.01893 -21.71829 -20.18650 -19.31145 -18.83197 -18.16515 -17.30304 -17.23187 -16.70655 -16.37095 -16.29833 -16.08048 -15.75357 -15.44796 -14.90105 -14.62370 -14.23595 -13.96756 -13.92504 -13.59468 -13.46007 -13.42133 -13.34350 -13.23504 -13.20124 -12.84029 -12.76415 -12.58969 -12.28089 -12.10522 -11.88760 -11.68185 -11.43853 -11.39563 -11.11599 -10.85143 -10.72999 -10.35159 -9.62227 -9.36998 -8.66486 -8.17966 -6.44328 -0.00955 0.07933 0.55232 0.69430 1.05546 1.13114 1.42661 1.43482 1.51725 1.55016 1.68110 1.83985 2.39178 3.08515 3.35402 3.46651 3.70460 3.77271 3.96782 4.04333 4.07520 4.18611 4.22229 4.25605 4.28170 4.48914 4.61464 4.64967 4.72566 4.79355 4.84438 4.90521 4.92992 5.04069 5.22041 5.37851 5.48590 5.55718 5.64250 5.75235 5.95888 6.63929 7.27020 7.43626 7.54425 8.86348 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002725 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.782475 B =10271.331559 C =11987.834669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.189 3.811 3 N -0.334 5.334 4 N -0.334 5.334 5 C 0.150 3.850 6 S 0.016 5.984 7 C -0.102 4.102 8 C 0.250 3.750 9 H 0.039 0.961 10 O -0.571 6.571 11 C -0.585 4.585 12 H 0.060 0.940 13 C 0.032 3.968 14 N -0.894 5.894 15 Si 0.961 3.039 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.268 1.268 19 N -0.460 5.460 20 C 0.109 3.891 21 C -0.055 4.055 22 C -0.190 4.190 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.210 4.210 26 S 0.116 5.884 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.360 0.640 33 H 0.265 0.735 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.455 -10.295 1.530 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 N -0.174 5.174 4 N -0.178 5.178 5 C -0.226 4.226 6 S 0.246 5.754 7 C -0.251 4.251 8 C 0.190 3.810 9 H 0.057 0.943 10 O -0.375 6.375 11 C -0.625 4.625 12 H 0.078 0.922 13 C -0.171 4.171 14 N -0.530 5.530 15 Si 0.785 3.215 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.193 1.193 19 N -0.155 5.155 20 C -0.013 4.013 21 C -0.095 4.095 22 C -0.308 4.308 23 C -0.171 4.171 24 C -0.177 4.177 25 C -0.345 4.345 26 S 0.379 5.621 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.206 0.794 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.157 0.843 39 H 0.172 0.828 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -27.111 -9.973 1.950 28.953 hybrid contribution 1.981 0.505 -0.164 2.051 sum -25.130 -9.468 1.786 26.914 Atomic orbital electron populations 1.20515 0.79691 1.06173 1.05833 1.26028 0.98588 0.81454 1.02022 1.73847 0.96640 1.26142 1.20774 1.74635 1.13088 1.08221 1.21827 1.27164 0.92378 0.95333 1.07709 1.85517 0.88803 1.08851 1.92276 1.24409 0.96838 0.98363 1.05515 1.18943 0.86221 0.91052 0.84765 0.94345 1.86518 1.94630 1.40330 1.15992 1.21822 0.92045 0.93813 1.54781 0.92181 1.25839 1.00546 0.97666 0.93091 1.70179 1.16474 1.18937 1.47429 0.85586 0.77637 0.79113 0.79117 1.19445 1.20628 1.19300 1.46658 1.03700 1.09470 1.55639 1.22251 1.04397 0.75736 0.98867 1.20317 1.03227 0.90388 0.95606 1.24132 0.96977 0.97962 1.11695 1.20451 1.01640 0.91998 1.02970 1.20401 0.94280 0.99223 1.03787 1.25994 0.99125 1.00281 1.09126 1.84122 1.05441 0.99745 1.72799 0.87533 0.87744 0.87838 0.90032 0.89962 0.79437 0.92632 0.85077 0.88249 0.90378 0.88911 0.84301 0.82822 0.79624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.09 71.24 0.72 -0.06 16 2 C 0.19 4.81 8.07 137.63 1.11 5.92 16 3 N -0.33 -11.87 12.18 -49.52 -0.60 -12.47 16 4 N -0.33 -13.37 11.60 -56.86 -0.66 -14.03 16 5 C 0.15 5.19 8.07 179.55 1.45 6.64 16 6 S 0.02 0.58 21.59 -56.49 -1.22 -0.64 16 7 C -0.10 -4.38 4.84 71.98 0.35 -4.03 16 8 C 0.25 12.65 2.82 29.85 0.08 12.74 16 9 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 10 O -0.57 -28.84 12.48 -148.98 -1.86 -30.70 16 11 C -0.59 -32.06 8.76 25.60 0.22 -31.84 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 13 C 0.03 1.78 5.40 84.65 0.46 2.24 16 14 N -0.89 -52.37 12.84 21.45 0.28 -52.09 16 15 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 N -0.46 -11.83 2.81 -513.10 -1.44 -13.27 16 20 C 0.11 1.89 5.74 86.38 0.50 2.39 16 21 C -0.06 -0.90 6.03 29.85 0.18 -0.72 16 22 C -0.19 -2.91 5.76 24.59 0.14 -2.77 16 23 C -0.14 -2.32 10.05 21.22 0.21 -2.10 16 24 C -0.15 -2.04 10.18 21.22 0.22 -1.82 16 25 C -0.21 -2.42 11.23 66.72 0.75 -1.67 16 26 S 0.12 1.36 23.33 -56.49 -1.32 0.05 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 0.70 7.93 -2.39 -0.02 0.69 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 3.53 8.14 -2.40 -0.02 3.51 16 31 H 0.08 3.65 8.14 -2.40 -0.02 3.63 16 32 H 0.36 16.21 9.04 -74.06 -0.67 15.54 16 33 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.13 1.44 7.88 -2.39 -0.02 1.42 16 35 H 0.10 1.88 7.86 -2.39 -0.02 1.86 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 39 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 40 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -72.69 374.64 1.98 -70.71 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.40 Total: 22.27 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 6.39 Total: -15.09 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -2.43 Total: -91.86 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.86 Total: -30.70 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.54 Total: -0.59 kcal Total: -72.69 1.98 -70.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352165746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.725 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds