Wall clock time and date at job start Tue Mar 31 2020 22:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86803 * 119.99731 * 2 1 4 4 H 1.48503 * 109.47116 * 269.99982 * 3 2 1 5 5 H 1.48493 * 109.47231 * 29.99999 * 3 2 1 6 6 H 1.48502 * 109.47202 * 149.99899 * 3 2 1 7 7 C 1.40124 * 120.00638 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.46175 * 119.99671 * 359.97438 * 7 2 1 10 10 O 1.21742 * 120.00014 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00122 * 179.97438 * 9 7 2 12 12 C 1.39535 * 119.99970 * 185.27423 * 11 9 7 13 13 C 1.39048 * 120.08350 * 33.39795 * 12 11 9 14 14 C 1.38033 * 119.91722 * 179.97438 * 13 12 11 15 15 C 1.38357 * 120.08173 * 0.26910 * 14 13 12 16 16 C 1.38311 * 120.16619 * 359.45269 * 15 14 13 17 17 S 1.76197 * 119.95596 * 180.29901 * 16 15 14 18 18 O 1.42094 * 104.27956 * 26.32238 * 17 16 15 19 19 O 1.42101 * 104.27890 * 154.18114 * 17 16 15 20 20 C 1.81406 * 104.44824 * 270.24894 * 17 16 15 21 21 C 1.53177 * 109.54475 * 304.82678 * 20 17 16 22 22 C 1.53101 * 109.15715 * 183.24049 * 21 20 17 23 23 O 1.42901 * 109.48826 * 57.47174 * 22 21 20 24 24 C 1.42906 * 114.09915 * 298.88962 * 23 22 21 25 25 C 1.53095 * 109.41144 * 61.15704 * 24 23 22 26 26 C 1.38077 * 120.08107 * 0.54672 * 16 15 14 27 27 H 0.96995 * 120.00738 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99685 * 5.28483 * 11 9 7 29 29 H 1.07997 * 120.03923 * 359.97438 * 13 12 11 30 30 H 1.08001 * 119.96233 * 179.97438 * 14 13 12 31 31 H 1.07998 * 119.91235 * 179.72634 * 15 14 13 32 32 H 1.09007 * 109.53866 * 65.00215 * 20 17 16 33 33 H 1.09001 * 109.51934 * 303.06044 * 21 20 17 34 34 H 1.09000 * 109.52425 * 63.24521 * 21 20 17 35 35 H 1.09005 * 109.40755 * 297.49407 * 22 21 20 36 36 H 1.08998 * 109.49057 * 177.50755 * 22 21 20 37 37 H 1.09002 * 109.47783 * 301.17522 * 24 23 22 38 38 H 1.09001 * 109.49187 * 181.14399 * 24 23 22 39 39 H 1.09003 * 109.52044 * 182.48746 * 25 24 23 40 40 H 1.08999 * 109.52373 * 62.29809 * 25 24 23 41 41 H 1.08007 * 120.03980 * 179.74847 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5378 1.4403 0.7001 7 6 2.0071 -1.2134 -0.0005 8 1 3.0871 -1.2133 -0.0001 9 6 1.2763 -2.4794 -0.0005 10 8 0.0589 -2.4795 -0.0005 11 7 1.9502 -3.6465 -0.0016 12 6 1.2569 -4.8524 -0.1127 13 6 0.0947 -4.9206 -0.8729 14 6 -0.5882 -6.1154 -0.9809 15 6 -0.1205 -7.2427 -0.3293 16 6 1.0383 -7.1801 0.4232 17 16 1.6331 -8.6211 1.2443 18 8 1.1264 -9.6998 0.4704 19 8 3.0316 -8.4018 1.3682 20 6 0.8351 -8.5760 2.8728 21 6 1.1414 -7.2401 3.5567 22 6 0.5323 -7.2435 4.9613 23 8 1.0524 -8.3481 5.7039 24 6 0.7542 -9.6251 5.1361 25 6 1.3741 -9.7182 3.7393 26 6 1.7267 -5.9885 0.5359 27 1 -0.4851 0.8399 -0.0004 28 1 2.9171 -3.6483 0.0750 29 1 -0.2733 -4.0400 -1.3783 30 1 -1.4912 -6.1691 -1.5709 31 1 -0.6594 -8.1750 -0.4120 32 1 -0.2429 -8.6860 2.7537 33 1 2.2208 -7.1072 3.6294 34 1 0.7116 -6.4254 2.9738 35 1 -0.5514 -7.3342 4.8860 36 1 0.7847 -6.3128 5.4694 37 1 -0.3266 -9.7469 5.0630 38 1 1.1665 -10.4102 5.7699 39 1 1.1106 -10.6743 3.2869 40 1 2.4584 -9.6370 3.8159 41 1 2.6294 -5.9394 1.1270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360182219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:54 Heat of formation + Delta-G solvation = -131.298168 kcal Electronic energy + Delta-G solvation = -27380.471753 eV Core-core repulsion = 23352.495477 eV Total energy + Delta-G solvation = -4027.976276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.55469 -39.39019 -37.16464 -37.09146 -35.94673 -34.22389 -33.65721 -32.59315 -31.63392 -30.76768 -29.24571 -26.37969 -25.81633 -24.11881 -23.03277 -22.31722 -20.93298 -20.32333 -18.75894 -17.76289 -17.53896 -17.17347 -16.34109 -16.14628 -15.81628 -15.66310 -15.42865 -15.15790 -15.03336 -14.55851 -14.27144 -14.18727 -14.05183 -13.55715 -13.01324 -12.76051 -12.69976 -12.31000 -12.24338 -12.10137 -12.03147 -11.90765 -11.73713 -11.52830 -11.36493 -11.31778 -11.25447 -11.18386 -10.78336 -10.61987 -10.46321 -10.43218 -9.78757 -9.57881 -9.04186 -8.93489 -7.93126 -7.35617 -6.47149 -4.94744 0.01451 1.20862 1.69393 2.85638 3.00276 3.08139 3.11263 3.57534 3.61801 3.85479 3.90609 3.97442 4.09904 4.34014 4.37570 4.52194 4.55682 4.70769 4.86302 5.06466 5.08616 5.14456 5.18116 5.28365 5.35553 5.36470 5.49002 5.52833 5.63032 5.67360 5.76695 5.79126 5.95210 6.08657 6.27904 6.73249 6.77746 6.87654 7.05086 7.18126 7.56957 7.85673 8.01858 8.73293 9.04561 10.22721 10.43121 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.003130 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.300471 B = 8943.657516 C = 9869.481850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.541 3.459 10 O -0.562 6.562 11 N -0.699 5.699 12 C 0.178 3.822 13 C -0.074 4.074 14 C -0.119 4.119 15 C -0.071 4.071 16 C -0.635 4.635 17 S 2.500 3.500 18 O -0.943 6.943 19 O -0.936 6.936 20 C -0.570 4.570 21 C -0.146 4.146 22 C 0.069 3.931 23 O -0.380 6.380 24 C 0.070 3.930 25 C -0.147 4.147 26 C -0.084 4.084 27 H 0.273 0.727 28 H 0.397 0.603 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -15.658 6.834 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.349 3.651 10 O -0.444 6.444 11 N -0.343 5.343 12 C 0.078 3.922 13 C -0.095 4.095 14 C -0.139 4.139 15 C -0.092 4.092 16 C -0.724 4.724 17 S 2.683 3.317 18 O -0.940 6.940 19 O -0.933 6.933 20 C -0.679 4.679 21 C -0.184 4.184 22 C -0.009 4.009 23 O -0.298 6.298 24 C -0.008 4.008 25 C -0.186 4.186 26 C -0.106 4.106 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.164 0.836 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.159 0.841 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.053 -16.002 6.648 17.328 hybrid contribution 0.094 1.486 -0.177 1.500 sum 0.148 -14.516 6.471 15.893 Atomic orbital electron populations 1.69966 1.07201 1.27999 1.33398 1.25752 0.94732 1.00620 0.92418 0.86254 0.80152 0.80693 0.79087 1.19508 1.20234 1.18671 1.20870 0.93949 0.88877 1.53498 0.90814 1.18419 0.87477 0.82037 0.77194 1.90635 1.13649 1.85993 1.54119 1.44233 1.09899 1.04073 1.76054 1.18007 0.93915 0.86762 0.93520 1.21726 0.94477 0.98264 0.95046 1.21121 1.00135 0.92373 1.00258 1.20646 0.93780 0.98737 0.96016 1.29865 1.08243 1.16823 1.17478 1.05320 0.75395 0.74696 0.76328 1.93541 1.81455 1.52415 1.66563 1.93547 1.27817 1.85518 1.86432 1.30228 1.13911 1.03826 1.19925 1.22118 1.04133 0.93843 0.98316 1.22531 0.97405 0.90171 0.90800 1.87957 1.77933 1.14032 1.49886 1.22467 0.99291 0.86326 0.92672 1.22088 1.02692 0.96484 0.97298 1.20604 1.00086 0.91209 0.98742 0.91608 0.76954 0.83598 0.85525 0.85161 0.84111 0.88893 0.88385 0.92614 0.87808 0.92628 0.88108 0.89201 0.89064 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.07 11.82 55.55 0.66 -20.41 16 2 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 3 Si 0.91 18.79 29.56 -169.99 -5.02 13.77 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.54 -13.97 9.54 -35.69 -0.34 -14.31 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.54 14.15 7.48 -13.08 -0.10 14.06 16 10 O -0.56 -16.45 12.70 5.15 0.07 -16.38 16 11 N -0.70 -14.78 5.32 -11.20 -0.06 -14.84 16 12 C 0.18 3.49 6.28 -83.77 -0.53 2.96 16 13 C -0.07 -1.45 8.65 -39.36 -0.34 -1.79 16 14 C -0.12 -1.91 10.04 -39.61 -0.40 -2.31 16 15 C -0.07 -1.05 9.47 -39.51 -0.37 -1.42 16 16 C -0.63 -9.47 4.90 -39.61 -0.19 -9.67 16 17 S 2.50 32.30 4.67 -107.50 -0.50 31.80 16 18 O -0.94 -14.05 17.13 -57.54 -0.99 -15.04 16 19 O -0.94 -14.41 17.11 -57.54 -0.98 -15.40 16 20 C -0.57 -5.49 2.83 -26.55 -0.08 -5.57 16 21 C -0.15 -1.51 5.04 -26.59 -0.13 -1.64 16 22 C 0.07 0.66 6.84 37.21 0.25 0.92 16 23 O -0.38 -4.00 10.77 -35.23 -0.38 -4.38 16 24 C 0.07 0.56 6.84 37.21 0.25 0.81 16 25 C -0.15 -1.23 5.43 -26.59 -0.14 -1.38 16 26 C -0.08 -1.38 8.48 -39.36 -0.33 -1.72 16 27 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16 28 H 0.40 7.21 8.79 -40.82 -0.36 6.85 16 29 H 0.15 3.24 6.41 -52.49 -0.34 2.91 16 30 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.13 1.59 7.57 -52.49 -0.40 1.19 16 32 H 0.14 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.07 6.84 -51.93 -0.36 0.71 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.14 2.01 7.57 -52.48 -0.40 1.61 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -35.12 354.24 -9.62 -44.74 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.20 Total: 9.74 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -2.54 Total: -18.93 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.60 Total: -35.25 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -2.28 Total: -51.20 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: 32.30 SS G_CDS: -0.50 Total: 31.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.12 -9.62 -44.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360182219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.561 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds