Wall clock time and date at job start Tue Mar 31 2020 22:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86803 * 119.99731 * 2 1 4 4 H 1.48503 * 109.47116 * 269.99982 * 3 2 1 5 5 H 1.48493 * 109.47231 * 29.99999 * 3 2 1 6 6 H 1.48502 * 109.47202 * 149.99899 * 3 2 1 7 7 C 1.40124 * 120.00638 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.46175 * 119.99671 * 359.97438 * 7 2 1 10 10 O 1.21742 * 120.00014 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00122 * 179.97438 * 9 7 2 12 12 C 1.39535 * 119.99970 * 185.27423 * 11 9 7 13 13 C 1.39048 * 120.08350 * 33.39795 * 12 11 9 14 14 C 1.38033 * 119.91722 * 179.97438 * 13 12 11 15 15 C 1.38357 * 120.08173 * 0.26910 * 14 13 12 16 16 C 1.38311 * 120.16619 * 359.45269 * 15 14 13 17 17 S 1.76197 * 119.95596 * 180.29901 * 16 15 14 18 18 O 1.42094 * 104.27956 * 26.32238 * 17 16 15 19 19 O 1.42101 * 104.27890 * 154.18114 * 17 16 15 20 20 C 1.81406 * 104.44824 * 270.24894 * 17 16 15 21 21 C 1.53177 * 109.54475 * 304.82678 * 20 17 16 22 22 C 1.53101 * 109.15715 * 183.24049 * 21 20 17 23 23 O 1.42901 * 109.48826 * 57.47174 * 22 21 20 24 24 C 1.42906 * 114.09915 * 298.88962 * 23 22 21 25 25 C 1.53095 * 109.41144 * 61.15704 * 24 23 22 26 26 C 1.38077 * 120.08107 * 0.54672 * 16 15 14 27 27 H 0.96995 * 120.00738 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99685 * 5.28483 * 11 9 7 29 29 H 1.07997 * 120.03923 * 359.97438 * 13 12 11 30 30 H 1.08001 * 119.96233 * 179.97438 * 14 13 12 31 31 H 1.07998 * 119.91235 * 179.72634 * 15 14 13 32 32 H 1.09007 * 109.53866 * 65.00215 * 20 17 16 33 33 H 1.09001 * 109.51934 * 303.06044 * 21 20 17 34 34 H 1.09000 * 109.52425 * 63.24521 * 21 20 17 35 35 H 1.09005 * 109.40755 * 297.49407 * 22 21 20 36 36 H 1.08998 * 109.49057 * 177.50755 * 22 21 20 37 37 H 1.09002 * 109.47783 * 301.17522 * 24 23 22 38 38 H 1.09001 * 109.49187 * 181.14399 * 24 23 22 39 39 H 1.09003 * 109.52044 * 182.48746 * 25 24 23 40 40 H 1.08999 * 109.52373 * 62.29809 * 25 24 23 41 41 H 1.08007 * 120.03980 * 179.74847 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5378 1.4403 0.7001 7 6 2.0071 -1.2134 -0.0005 8 1 3.0871 -1.2133 -0.0001 9 6 1.2763 -2.4794 -0.0005 10 8 0.0589 -2.4795 -0.0005 11 7 1.9502 -3.6465 -0.0016 12 6 1.2569 -4.8524 -0.1127 13 6 0.0947 -4.9206 -0.8729 14 6 -0.5882 -6.1154 -0.9809 15 6 -0.1205 -7.2427 -0.3293 16 6 1.0383 -7.1801 0.4232 17 16 1.6331 -8.6211 1.2443 18 8 1.1264 -9.6998 0.4704 19 8 3.0316 -8.4018 1.3682 20 6 0.8351 -8.5760 2.8728 21 6 1.1414 -7.2401 3.5567 22 6 0.5323 -7.2435 4.9613 23 8 1.0524 -8.3481 5.7039 24 6 0.7542 -9.6251 5.1361 25 6 1.3741 -9.7182 3.7393 26 6 1.7267 -5.9885 0.5359 27 1 -0.4851 0.8399 -0.0004 28 1 2.9171 -3.6483 0.0750 29 1 -0.2733 -4.0400 -1.3783 30 1 -1.4912 -6.1691 -1.5709 31 1 -0.6594 -8.1750 -0.4120 32 1 -0.2429 -8.6860 2.7537 33 1 2.2208 -7.1072 3.6294 34 1 0.7116 -6.4254 2.9738 35 1 -0.5514 -7.3342 4.8860 36 1 0.7847 -6.3128 5.4694 37 1 -0.3266 -9.7469 5.0630 38 1 1.1665 -10.4102 5.7699 39 1 1.1106 -10.6743 3.2869 40 1 2.4584 -9.6370 3.8159 41 1 2.6294 -5.9394 1.1270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360182219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:53 Heat of formation + Delta-G solvation = -157.992780 kcal Electronic energy + Delta-G solvation = -27381.629318 eV Core-core repulsion = 23352.495477 eV Total energy + Delta-G solvation = -4029.133841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96666 -40.23153 -38.86281 -38.23861 -37.07655 -35.42042 -34.98772 -34.56465 -32.52919 -31.89214 -30.80985 -28.27637 -26.57116 -24.93502 -24.31405 -23.78605 -22.06245 -21.60254 -19.89657 -19.54459 -18.85441 -18.10568 -17.64767 -17.19967 -17.04476 -17.00610 -16.53169 -16.49644 -16.05887 -15.80079 -15.64592 -15.10352 -14.97442 -14.89650 -14.63418 -14.48697 -13.85374 -13.40467 -13.32095 -13.28751 -13.22628 -13.14447 -13.09246 -12.82829 -12.76077 -12.59845 -12.43138 -12.18389 -12.06357 -12.04843 -11.82743 -11.32169 -11.18033 -10.94225 -10.49296 -10.30299 -9.91100 -8.96172 -8.41034 -6.98715 -1.01810 -0.12633 0.32328 1.38873 1.39348 1.55281 1.77529 2.18005 2.25209 2.53874 2.77386 2.87690 2.94698 3.01583 3.29596 3.50442 3.53682 3.85196 3.90505 3.93678 4.09006 4.19703 4.22508 4.39479 4.42028 4.47609 4.52551 4.55791 4.59041 4.77558 4.78206 4.87087 4.98324 4.99794 5.05173 5.22332 5.31130 5.36814 5.64545 5.75756 6.09529 6.21902 6.24961 6.74612 7.24388 8.28133 8.51942 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015412 B = 0.003130 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.300471 B = 8943.657516 C = 9869.481850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.033 3.967 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.531 3.469 10 O -0.604 6.604 11 N -0.694 5.694 12 C 0.145 3.855 13 C -0.102 4.102 14 C -0.116 4.116 15 C -0.061 4.061 16 C -0.636 4.636 17 S 2.511 3.489 18 O -0.959 6.959 19 O -0.964 6.964 20 C -0.546 4.546 21 C -0.152 4.152 22 C 0.067 3.933 23 O -0.399 6.399 24 C 0.065 3.935 25 C -0.154 4.154 26 C -0.077 4.077 27 H 0.279 0.721 28 H 0.408 0.592 29 H 0.108 0.892 30 H 0.153 0.847 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -17.449 8.075 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.184 4.184 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.600 4.600 8 H 0.110 0.890 9 C 0.338 3.662 10 O -0.489 6.489 11 N -0.339 5.339 12 C 0.047 3.953 13 C -0.123 4.123 14 C -0.135 4.135 15 C -0.081 4.081 16 C -0.723 4.723 17 S 2.696 3.304 18 O -0.956 6.956 19 O -0.961 6.961 20 C -0.658 4.658 21 C -0.191 4.191 22 C -0.010 4.010 23 O -0.318 6.318 24 C -0.013 4.013 25 C -0.193 4.193 26 C -0.099 4.099 27 H 0.089 0.911 28 H 0.244 0.756 29 H 0.126 0.874 30 H 0.171 0.829 31 H 0.183 0.817 32 H 0.189 0.811 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.350 -17.830 7.827 19.475 hybrid contribution -0.017 1.807 -0.500 1.875 sum 0.333 -16.023 7.327 17.622 Atomic orbital electron populations 1.70114 1.09434 1.29456 1.34817 1.26945 0.95556 1.04839 0.91088 0.84989 0.78831 0.74928 0.79456 1.18704 1.19629 1.17209 1.21404 0.95046 0.89584 1.54002 0.89023 1.18687 0.87191 0.83573 0.76723 1.90591 1.15365 1.87083 1.55904 1.43773 1.10349 1.03766 1.75986 1.18224 0.94671 0.86975 0.95423 1.21575 0.95672 0.98576 0.96470 1.21389 1.00542 0.91371 1.00189 1.21082 0.93418 0.99374 0.94197 1.30358 1.07801 1.17032 1.17111 1.05155 0.74757 0.73257 0.77277 1.93516 1.81508 1.52264 1.68320 1.93511 1.29946 1.85452 1.87220 1.30053 1.15209 1.04250 1.16296 1.22170 1.03929 0.93946 0.99018 1.22578 0.98115 0.90380 0.89970 1.87941 1.78315 1.15051 1.50450 1.22723 1.00545 0.85684 0.92327 1.22278 1.02608 0.96848 0.97585 1.20699 1.00422 0.90728 0.98020 0.91139 0.75612 0.87363 0.82885 0.81699 0.81061 0.89512 0.89226 0.91184 0.87772 0.90867 0.86141 0.86768 0.89541 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.78 11.82 21.85 0.26 -46.52 16 2 C 0.03 1.72 5.50 85.33 0.47 2.19 16 3 Si 1.00 38.78 29.56 68.60 2.03 40.81 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.56 -30.32 9.54 24.79 0.24 -30.08 16 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 9 C 0.53 29.21 7.48 86.30 0.65 29.86 16 10 O -0.60 -37.58 12.70 -4.48 -0.06 -37.64 16 11 N -0.69 -30.79 5.32 -307.53 -1.64 -32.42 16 12 C 0.15 5.91 6.28 38.29 0.24 6.15 16 13 C -0.10 -4.19 8.65 22.42 0.19 -3.99 16 14 C -0.12 -3.66 10.04 22.25 0.22 -3.44 16 15 C -0.06 -1.66 9.47 22.32 0.21 -1.45 16 16 C -0.64 -18.09 4.90 22.25 0.11 -17.98 16 17 S 2.51 59.37 4.67 -56.49 -0.26 59.11 16 18 O -0.96 -25.86 17.13 -127.65 -2.19 -28.05 16 19 O -0.96 -28.50 17.11 -127.65 -2.18 -30.69 16 20 C -0.55 -8.81 2.83 30.71 0.09 -8.73 16 21 C -0.15 -2.88 5.04 30.69 0.15 -2.72 16 22 C 0.07 1.16 6.84 72.02 0.49 1.65 16 23 O -0.40 -7.38 10.77 -148.98 -1.60 -8.99 16 24 C 0.06 0.79 6.84 72.01 0.49 1.28 16 25 C -0.15 -2.05 5.43 30.68 0.17 -1.89 16 26 C -0.08 -2.53 8.48 22.42 0.19 -2.34 16 27 H 0.28 14.55 8.29 -92.71 -0.77 13.78 16 28 H 0.41 15.45 8.79 -92.71 -0.82 14.63 16 29 H 0.11 5.26 6.41 -2.91 -0.02 5.24 16 30 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.17 3.39 7.57 -2.91 -0.02 3.36 16 32 H 0.17 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.86 6.84 -2.39 -0.02 1.84 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.15 4.39 7.57 -2.91 -0.02 4.37 16 Total: -1.00 -79.75 354.24 -1.48 -81.22 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 0.26 Total: 34.65 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 3.91 Total: -31.50 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.38 Total: -78.94 kcal Atomic # 8 Polarization: -99.32 SS G_CDS: -6.03 Total: -105.36 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: 59.37 SS G_CDS: -0.26 Total: 59.11 kcal Total: -79.75 -1.48 -81.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360182219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.770 kcal (2) G-P(sol) polarization free energy of solvation -79.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds