Wall clock time and date at job start Tue Mar 31 2020 22:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.39649 * 120.07741 * 2 1 4 4 C 1.47726 * 120.14707 * 359.69832 * 3 2 1 5 5 O 1.21469 * 120.00255 * 353.58606 * 4 3 2 6 6 O 1.34710 * 120.00323 * 173.58329 * 4 3 2 7 7 C 1.39605 * 119.70365 * 179.97438 * 3 2 1 8 8 C 1.37961 * 119.84798 * 359.97438 * 7 3 2 9 9 C 1.38349 * 120.14930 * 359.97438 * 8 7 3 10 10 C 1.37922 * 120.07830 * 179.97438 * 2 1 3 11 11 S 1.76197 * 119.92550 * 0.02562 * 10 2 1 12 12 O 1.42097 * 106.40524 * 173.19564 * 11 10 2 13 13 O 1.42099 * 106.40113 * 306.11769 * 11 10 2 14 14 N 1.65602 * 107.21591 * 59.65572 * 11 10 2 15 15 C 1.46500 * 119.99746 * 66.96301 * 14 11 10 16 16 C 1.53004 * 109.46807 * 193.89100 * 15 14 11 17 17 C 1.50695 * 115.55137 * 66.48039 * 16 15 14 18 18 H 1.08003 * 120.00134 * 269.50204 * 17 16 15 19 19 C 1.37876 * 120.00525 * 89.50240 * 17 16 15 20 20 N 1.31512 * 120.00243 * 180.46707 * 19 17 16 21 21 Si 1.86804 * 119.99540 * 0.46936 * 19 17 16 22 22 H 1.48498 * 109.47418 * 92.38698 * 21 19 17 23 23 H 1.48500 * 109.46856 * 212.38560 * 21 19 17 24 24 H 1.48501 * 109.47273 * 332.38397 * 21 19 17 25 25 C 1.53004 * 117.49987 * 280.80491 * 16 15 14 26 26 C 1.53006 * 117.49688 * 212.14495 * 16 15 14 27 27 H 1.08997 * 109.47660 * 83.01810 * 1 2 3 28 28 H 1.09000 * 109.47506 * 203.01591 * 1 2 3 29 29 H 1.09002 * 109.47675 * 323.01428 * 1 2 3 30 30 H 0.96695 * 117.00702 * 180.02562 * 6 4 3 31 31 H 1.08003 * 120.07802 * 179.97438 * 7 3 2 32 32 H 1.08008 * 119.92551 * 179.97438 * 8 7 3 33 33 H 1.08004 * 119.84629 * 180.02562 * 9 8 7 34 34 H 0.97003 * 120.00299 * 246.95678 * 14 11 10 35 35 H 1.09000 * 109.47091 * 313.88423 * 15 14 11 36 36 H 1.08996 * 109.47250 * 73.88973 * 15 14 11 37 37 H 0.97005 * 120.00062 * 180.02562 * 20 19 17 38 38 H 1.08997 * 117.49400 * 0.02562 * 25 16 15 39 39 H 1.08997 * 117.49789 * 145.02196 * 25 16 15 40 40 H 1.08998 * 117.49653 * 214.97732 * 26 16 15 41 41 H 1.09001 * 117.49563 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.2085 0.0000 4 6 1.4732 2.4907 -0.0067 5 8 0.2648 2.4984 -0.1298 6 8 2.1443 3.6514 0.1236 7 6 3.6028 1.1993 0.0005 8 6 4.2816 -0.0017 0.0016 9 6 3.5820 -1.1953 0.0027 10 6 2.1981 -1.1935 0.0005 11 16 1.3173 -2.7195 0.0005 12 8 2.2889 -3.7438 -0.1604 13 8 0.4203 -2.6650 1.1014 14 7 0.3806 -2.7447 -1.3649 15 6 1.0121 -2.8120 -2.6851 16 6 -0.0214 -2.4770 -3.7624 17 6 -0.5345 -1.0601 -3.7528 18 1 -1.4109 -0.8071 -3.1745 19 6 0.1148 -0.0867 -4.4821 20 7 -0.3276 1.1516 -4.4663 21 14 1.6229 -0.5271 -5.4927 22 1 1.2088 -0.8665 -6.8778 23 1 2.5530 0.6301 -5.5237 24 1 2.3058 -1.6947 -4.8800 25 6 -1.0004 -3.5801 -4.1696 26 6 0.1253 -3.1659 -5.1207 27 1 -0.3634 0.1249 -1.0200 28 1 -0.3634 -0.9458 0.4018 29 1 -0.3634 0.8209 0.6182 30 1 1.6212 4.4646 0.1139 31 1 4.1502 2.1304 0.0001 32 1 5.3616 -0.0102 0.0016 33 1 4.1184 -2.1327 0.0039 34 1 -0.5861 -2.7151 -1.2907 35 1 1.8319 -2.0951 -2.7327 36 1 1.3985 -3.8174 -2.8523 37 1 0.1290 1.8364 -4.9798 38 1 -0.9083 -4.5443 -3.6697 39 1 -2.0154 -3.2809 -4.4308 40 1 -0.1497 -2.5945 -6.0072 41 1 0.9584 -3.8574 -5.2469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362330983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:50 Heat of formation + Delta-G solvation = -104.724074 kcal Electronic energy + Delta-G solvation = -28779.637492 eV Core-core repulsion = 24752.813555 eV Total energy + Delta-G solvation = -4026.823937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.48892 -38.70676 -37.50784 -37.04495 -36.05189 -35.64549 -33.66365 -32.62427 -32.13273 -31.65543 -27.21798 -26.38286 -24.92388 -24.43563 -22.81104 -21.76430 -20.95175 -19.47423 -19.15562 -18.17429 -17.43440 -17.18166 -16.61250 -16.08197 -15.85958 -15.73376 -15.55355 -15.02085 -14.86279 -14.34650 -13.83062 -13.57570 -13.45494 -13.24789 -13.10056 -12.72558 -12.59936 -12.38357 -12.31343 -12.04249 -11.88253 -11.73158 -11.65456 -11.47239 -11.35550 -11.17979 -10.95672 -10.67545 -10.49656 -10.22310 -9.96564 -9.68527 -9.45186 -9.32665 -8.87272 -8.81265 -8.66541 -8.58532 -6.17321 -4.21305 0.50269 0.72800 1.04177 2.51760 3.02140 3.20621 3.26018 3.32047 3.35484 3.55298 3.95352 4.34119 4.57990 4.74012 4.79473 4.81532 4.86522 5.07262 5.08748 5.31689 5.59232 5.59574 5.65124 5.77677 5.83012 5.93389 5.99302 6.02958 6.10735 6.13890 6.16505 6.34168 6.40904 6.51589 6.59551 6.62187 6.65166 6.88900 7.00813 7.04610 7.51033 7.64967 7.99643 8.40651 8.84640 9.44753 10.92967 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.006712 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.943878 B = 4170.511086 C = 5607.281866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.109 3.891 3 C -0.153 4.153 4 C 0.523 3.477 5 O -0.487 6.487 6 O -0.519 6.519 7 C -0.008 4.008 8 C -0.169 4.169 9 C 0.015 3.985 10 C -0.695 4.695 11 S 2.700 3.300 12 O -0.966 6.966 13 O -0.963 6.963 14 N -1.091 6.091 15 C 0.158 3.842 16 C -0.009 4.009 17 C -0.486 4.486 18 H 0.082 0.918 19 C 0.081 3.919 20 N -0.888 5.888 21 Si 0.871 3.129 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.257 1.257 25 C -0.177 4.177 26 C -0.196 4.196 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.413 0.587 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.422 0.578 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.264 0.736 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 -0.789 8.266 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.107 3.893 3 C -0.155 4.155 4 C 0.367 3.633 5 O -0.374 6.374 6 O -0.331 6.331 7 C -0.026 4.026 8 C -0.188 4.188 9 C -0.005 4.005 10 C -0.781 4.781 11 S 2.788 3.212 12 O -0.956 6.956 13 O -0.953 6.953 14 N -0.852 5.852 15 C 0.032 3.968 16 C -0.012 4.012 17 C -0.523 4.523 18 H 0.100 0.900 19 C -0.122 4.122 20 N -0.524 5.524 21 Si 0.699 3.301 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.181 1.181 25 C -0.214 4.214 26 C -0.235 4.235 27 H 0.142 0.858 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.272 0.728 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.258 0.742 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.071 -1.595 8.791 12.040 hybrid contribution 0.505 1.402 -1.126 1.868 sum 8.575 -0.192 7.665 11.503 Atomic orbital electron populations 1.21887 0.88597 1.05124 1.07233 1.19654 0.96977 0.89792 0.82838 1.18939 0.93706 0.90305 1.12558 1.20683 0.85582 0.83985 0.73085 1.90927 1.14936 1.87313 1.44266 1.84499 1.45687 1.17191 1.85749 1.21696 0.92827 0.99208 0.88859 1.21188 1.00602 0.91932 1.05030 1.21215 0.91917 0.99756 0.87568 1.30912 1.06330 1.20075 1.20747 1.01725 0.73247 0.73470 0.72790 1.93541 1.62141 1.53581 1.86348 1.93561 1.63735 1.87077 1.50938 1.55103 1.19519 1.90551 1.20054 1.21044 0.95467 0.98872 0.81422 1.19566 0.96044 0.94552 0.90995 1.20175 1.13647 0.88328 1.30160 0.90046 1.24956 0.96657 0.94701 0.95936 1.69896 1.40330 1.01176 1.41036 0.86987 0.83701 0.78070 0.81339 1.20450 1.22322 1.18121 1.22866 0.95556 0.98565 1.04452 1.22976 1.00648 1.04247 0.95583 0.85784 0.90147 0.88016 0.72808 0.83989 0.84373 0.83483 0.74175 0.91910 0.93052 0.92655 0.90663 0.89357 0.89275 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 7.93 36.00 0.29 -2.86 16 2 C 0.11 1.91 5.91 -104.22 -0.62 1.29 16 3 C -0.15 -2.49 5.87 -104.98 -0.62 -3.11 16 4 C 0.52 8.47 8.20 34.61 0.28 8.75 16 5 O -0.49 -9.30 14.16 -19.24 -0.27 -9.57 16 6 O -0.52 -6.23 12.70 -40.52 -0.51 -6.75 16 7 C -0.01 -0.10 9.62 -39.17 -0.38 -0.48 16 8 C -0.17 -2.05 10.03 -39.64 -0.40 -2.45 16 9 C 0.01 0.21 9.54 -39.49 -0.38 -0.17 16 10 C -0.70 -11.40 5.88 -39.64 -0.23 -11.63 16 11 S 2.70 45.20 4.93 -107.50 -0.53 44.67 16 12 O -0.97 -17.21 16.70 -57.17 -0.95 -18.17 16 13 O -0.96 -17.42 15.84 -57.17 -0.91 -18.32 16 14 N -1.09 -18.61 5.29 -10.61 -0.06 -18.66 16 15 C 0.16 2.97 5.57 -4.04 -0.02 2.94 16 16 C -0.01 -0.19 0.82 -155.66 -0.13 -0.32 16 17 C -0.49 -12.08 9.37 -34.44 -0.32 -12.40 16 18 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 19 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 20 N -0.89 -25.39 13.96 55.43 0.77 -24.61 16 21 Si 0.87 20.41 24.74 -169.99 -4.21 16.21 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.26 -5.60 5.94 56.52 0.34 -5.26 16 25 C -0.18 -3.24 9.96 -26.69 -0.27 -3.51 16 26 C -0.20 -3.83 7.33 -26.69 -0.20 -4.03 16 27 H 0.12 2.59 8.14 -51.93 -0.42 2.16 16 28 H 0.08 1.37 4.77 -51.93 -0.25 1.12 16 29 H 0.10 1.82 5.92 -51.93 -0.31 1.52 16 30 H 0.41 3.15 9.11 45.56 0.42 3.56 16 31 H 0.14 1.49 7.63 -52.48 -0.40 1.09 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.15 1.76 7.34 -52.48 -0.39 1.37 16 34 H 0.42 6.77 8.65 -34.48 -0.30 6.47 16 35 H 0.06 1.22 7.29 -51.93 -0.38 0.84 16 36 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.09 1.85 6.89 -51.93 -0.36 1.49 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -32.90 352.66 -8.55 -41.45 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.12 Total: 14.37 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -3.08 Total: -25.93 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.72 Total: -43.28 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -2.65 Total: -52.81 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.21 Total: 16.21 kcal Atomic # 16 Polarization: 45.20 SS G_CDS: -0.53 Total: 44.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.90 -8.55 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362330983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.276 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds