Wall clock time and date at job start Tue Mar 31 2020 22:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.39649 * 120.07741 * 2 1 4 4 C 1.47726 * 120.14707 * 359.69832 * 3 2 1 5 5 O 1.21469 * 120.00255 * 353.58606 * 4 3 2 6 6 O 1.34710 * 120.00323 * 173.58329 * 4 3 2 7 7 C 1.39605 * 119.70365 * 179.97438 * 3 2 1 8 8 C 1.37961 * 119.84798 * 359.97438 * 7 3 2 9 9 C 1.38349 * 120.14930 * 359.97438 * 8 7 3 10 10 C 1.37922 * 120.07830 * 179.97438 * 2 1 3 11 11 S 1.76197 * 119.92550 * 0.02562 * 10 2 1 12 12 O 1.42097 * 106.40524 * 173.19564 * 11 10 2 13 13 O 1.42099 * 106.40113 * 306.11769 * 11 10 2 14 14 N 1.65602 * 107.21591 * 59.65572 * 11 10 2 15 15 C 1.46500 * 119.99746 * 66.96301 * 14 11 10 16 16 C 1.53004 * 109.46807 * 193.89100 * 15 14 11 17 17 C 1.50695 * 115.55137 * 66.48039 * 16 15 14 18 18 H 1.08003 * 120.00134 * 269.50204 * 17 16 15 19 19 C 1.37876 * 120.00525 * 89.50240 * 17 16 15 20 20 N 1.31512 * 120.00243 * 180.46707 * 19 17 16 21 21 Si 1.86804 * 119.99540 * 0.46936 * 19 17 16 22 22 H 1.48498 * 109.47418 * 92.38698 * 21 19 17 23 23 H 1.48500 * 109.46856 * 212.38560 * 21 19 17 24 24 H 1.48501 * 109.47273 * 332.38397 * 21 19 17 25 25 C 1.53004 * 117.49987 * 280.80491 * 16 15 14 26 26 C 1.53006 * 117.49688 * 212.14495 * 16 15 14 27 27 H 1.08997 * 109.47660 * 83.01810 * 1 2 3 28 28 H 1.09000 * 109.47506 * 203.01591 * 1 2 3 29 29 H 1.09002 * 109.47675 * 323.01428 * 1 2 3 30 30 H 0.96695 * 117.00702 * 180.02562 * 6 4 3 31 31 H 1.08003 * 120.07802 * 179.97438 * 7 3 2 32 32 H 1.08008 * 119.92551 * 179.97438 * 8 7 3 33 33 H 1.08004 * 119.84629 * 180.02562 * 9 8 7 34 34 H 0.97003 * 120.00299 * 246.95678 * 14 11 10 35 35 H 1.09000 * 109.47091 * 313.88423 * 15 14 11 36 36 H 1.08996 * 109.47250 * 73.88973 * 15 14 11 37 37 H 0.97005 * 120.00062 * 180.02562 * 20 19 17 38 38 H 1.08997 * 117.49400 * 0.02562 * 25 16 15 39 39 H 1.08997 * 117.49789 * 145.02196 * 25 16 15 40 40 H 1.08998 * 117.49653 * 214.97732 * 26 16 15 41 41 H 1.09001 * 117.49563 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.2085 0.0000 4 6 1.4732 2.4907 -0.0067 5 8 0.2648 2.4984 -0.1298 6 8 2.1443 3.6514 0.1236 7 6 3.6028 1.1993 0.0005 8 6 4.2816 -0.0017 0.0016 9 6 3.5820 -1.1953 0.0027 10 6 2.1981 -1.1935 0.0005 11 16 1.3173 -2.7195 0.0005 12 8 2.2889 -3.7438 -0.1604 13 8 0.4203 -2.6650 1.1014 14 7 0.3806 -2.7447 -1.3649 15 6 1.0121 -2.8120 -2.6851 16 6 -0.0214 -2.4770 -3.7624 17 6 -0.5345 -1.0601 -3.7528 18 1 -1.4109 -0.8071 -3.1745 19 6 0.1148 -0.0867 -4.4821 20 7 -0.3276 1.1516 -4.4663 21 14 1.6229 -0.5271 -5.4927 22 1 1.2088 -0.8665 -6.8778 23 1 2.5530 0.6301 -5.5237 24 1 2.3058 -1.6947 -4.8800 25 6 -1.0004 -3.5801 -4.1696 26 6 0.1253 -3.1659 -5.1207 27 1 -0.3634 0.1249 -1.0200 28 1 -0.3634 -0.9458 0.4018 29 1 -0.3634 0.8209 0.6182 30 1 1.6212 4.4646 0.1139 31 1 4.1502 2.1304 0.0001 32 1 5.3616 -0.0102 0.0016 33 1 4.1184 -2.1327 0.0039 34 1 -0.5861 -2.7151 -1.2907 35 1 1.8319 -2.0951 -2.7327 36 1 1.3985 -3.8174 -2.8523 37 1 0.1290 1.8364 -4.9798 38 1 -0.9083 -4.5443 -3.6697 39 1 -2.0154 -3.2809 -4.4308 40 1 -0.1497 -2.5945 -6.0072 41 1 0.9584 -3.8574 -5.2469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362330983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:49 Heat of formation + Delta-G solvation = -129.787999 kcal Electronic energy + Delta-G solvation = -28780.724346 eV Core-core repulsion = 24752.813555 eV Total energy + Delta-G solvation = -4027.910790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68849 -39.85725 -39.07527 -38.42199 -37.22802 -37.02502 -35.09082 -34.15463 -33.80103 -32.79864 -28.49506 -28.12113 -26.61229 -25.60356 -24.01402 -23.28851 -22.09729 -21.05537 -20.55033 -19.40286 -18.73271 -18.60469 -18.20300 -17.35552 -17.18422 -16.94400 -16.78929 -16.71720 -16.18562 -15.76563 -15.10907 -14.97239 -14.84119 -14.75492 -14.57825 -14.28828 -14.09499 -13.71804 -13.52126 -13.36308 -13.24107 -13.16597 -12.97992 -12.91587 -12.82716 -12.73044 -12.57258 -12.07369 -11.95312 -11.87081 -11.48164 -11.28486 -10.98503 -10.61214 -10.57175 -10.36215 -10.18320 -10.02445 -8.20831 -6.26707 -0.68078 -0.52426 -0.15261 1.34134 1.35562 1.40229 1.49954 1.86545 2.00197 2.37754 2.40357 2.66070 3.13142 3.25771 3.36605 3.54051 3.68804 3.81095 3.97662 4.07375 4.19939 4.32681 4.44216 4.47660 4.48410 4.51576 4.60502 4.66405 4.68499 4.92292 4.93249 5.02964 5.08934 5.13486 5.17077 5.23847 5.45546 5.55128 5.55472 5.64053 5.75912 6.14436 6.38786 6.81423 6.89743 7.41971 8.92951 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.006712 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.943878 B = 4170.511086 C = 5607.281866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.080 3.920 3 C -0.178 4.178 4 C 0.523 3.477 5 O -0.531 6.531 6 O -0.501 6.501 7 C -0.001 4.001 8 C -0.152 4.152 9 C 0.009 3.991 10 C -0.708 4.708 11 S 2.715 3.285 12 O -0.972 6.972 13 O -0.982 6.982 14 N -1.094 6.094 15 C 0.160 3.840 16 C -0.035 4.035 17 C -0.469 4.469 18 H 0.040 0.960 19 C 0.026 3.974 20 N -0.942 5.942 21 Si 0.920 3.080 22 H -0.276 1.276 23 H -0.307 1.307 24 H -0.223 1.223 25 C -0.159 4.159 26 C -0.194 4.194 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.432 0.568 31 H 0.174 0.826 32 H 0.187 0.813 33 H 0.171 0.829 34 H 0.424 0.576 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.259 0.741 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.408 -2.577 8.326 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 C -0.180 4.180 4 C 0.369 3.631 5 O -0.422 6.422 6 O -0.315 6.315 7 C -0.019 4.019 8 C -0.171 4.171 9 C -0.010 4.010 10 C -0.795 4.795 11 S 2.805 3.195 12 O -0.962 6.962 13 O -0.972 6.972 14 N -0.855 5.855 15 C 0.034 3.966 16 C -0.037 4.037 17 C -0.507 4.507 18 H 0.058 0.942 19 C -0.172 4.172 20 N -0.581 5.581 21 Si 0.746 3.254 22 H -0.201 1.201 23 H -0.235 1.235 24 H -0.145 1.145 25 C -0.196 4.196 26 C -0.232 4.232 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.294 0.706 31 H 0.191 0.809 32 H 0.204 0.796 33 H 0.189 0.811 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.593 -3.413 8.858 14.984 hybrid contribution -0.612 2.026 -1.070 2.372 sum 10.982 -1.387 7.788 13.534 Atomic orbital electron populations 1.21630 0.90337 1.04998 1.04735 1.19633 0.96188 0.91210 0.85124 1.19193 0.95417 0.89751 1.13663 1.20878 0.85110 0.85096 0.72066 1.90914 1.16787 1.88023 1.46473 1.84439 1.45221 1.17080 1.84793 1.22124 0.91368 1.01286 0.87112 1.21748 1.02824 0.90466 1.02025 1.21664 0.90869 1.01784 0.86647 1.30789 1.07693 1.18870 1.22117 1.01123 0.72797 0.73398 0.72157 1.93522 1.62107 1.54192 1.86396 1.93533 1.64502 1.87482 1.51700 1.55083 1.19777 1.90761 1.19836 1.20972 0.94486 1.00103 0.81034 1.19481 0.98374 0.92757 0.93119 1.20292 1.11717 0.90822 1.27840 0.94201 1.25688 0.99593 0.94414 0.97469 1.70069 1.42385 1.02533 1.43150 0.86185 0.80598 0.78543 0.80120 1.20138 1.23485 1.14541 1.22901 0.94642 0.98811 1.03240 1.23049 1.02053 1.04074 0.93987 0.89622 0.89757 0.88697 0.70561 0.80882 0.79609 0.81121 0.74019 0.92657 0.90255 0.93242 0.87419 0.90350 0.90887 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.32 7.93 71.23 0.56 -5.75 16 2 C 0.08 2.85 5.91 -19.60 -0.12 2.74 16 3 C -0.18 -5.74 5.87 -20.10 -0.12 -5.86 16 4 C 0.52 17.26 8.20 70.33 0.58 17.84 16 5 O -0.53 -21.62 14.16 19.94 0.28 -21.33 16 6 O -0.50 -11.50 12.70 -56.20 -0.71 -12.21 16 7 C 0.00 -0.02 9.62 22.53 0.22 0.19 16 8 C -0.15 -3.03 10.03 22.23 0.22 -2.80 16 9 C 0.01 0.23 9.54 22.33 0.21 0.45 16 10 C -0.71 -22.45 5.88 22.23 0.13 -22.32 16 11 S 2.72 88.37 4.93 -56.49 -0.28 88.09 16 12 O -0.97 -32.27 16.70 -128.00 -2.14 -34.41 16 13 O -0.98 -35.60 15.84 -128.00 -2.03 -37.62 16 14 N -1.09 -36.65 5.29 -187.49 -0.99 -37.64 16 15 C 0.16 5.67 5.57 86.38 0.48 6.15 16 16 C -0.04 -1.41 0.82 -52.92 -0.04 -1.45 16 17 C -0.47 -24.08 9.37 25.60 0.24 -23.84 16 18 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 19 C 0.03 1.42 5.47 84.65 0.46 1.88 16 20 N -0.94 -56.71 13.96 21.45 0.30 -56.41 16 21 Si 0.92 41.65 24.74 68.60 1.70 43.35 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.22 -8.78 5.94 99.48 0.59 -8.19 16 25 C -0.16 -5.45 9.96 30.62 0.30 -5.15 16 26 C -0.19 -6.99 7.33 30.62 0.22 -6.77 16 27 H 0.09 3.97 8.14 -2.39 -0.02 3.95 16 28 H 0.08 3.09 4.77 -2.39 -0.01 3.08 16 29 H 0.09 3.74 5.92 -2.39 -0.01 3.73 16 30 H 0.43 6.20 9.11 -74.06 -0.67 5.53 16 31 H 0.17 2.88 7.63 -2.91 -0.02 2.86 16 32 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.17 3.35 7.34 -2.91 -0.02 3.33 16 34 H 0.42 13.82 8.65 -96.74 -0.84 12.98 16 35 H 0.06 2.02 7.29 -2.39 -0.02 2.01 16 36 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 37 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 38 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.07 2.89 6.89 -2.39 -0.02 2.87 16 41 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -75.11 352.66 -1.03 -76.14 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.52 Total: 36.75 kcal Atomic # 6 Polarization: -48.06 SS G_CDS: 3.36 Total: -44.70 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -0.69 Total: -94.05 kcal Atomic # 8 Polarization: -100.98 SS G_CDS: -4.60 Total: -105.58 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.70 Total: 43.35 kcal Atomic # 16 Polarization: 88.37 SS G_CDS: -0.28 Total: 88.09 kcal Total: -75.11 -1.03 -76.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362330983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.648 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds