Wall clock time and date at job start Tue Mar 31 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00684 * 2 1 4 4 O 1.20832 * 119.99713 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00509 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47227 * 84.99901 * 5 3 2 7 7 O 1.42903 * 109.46938 * 325.00208 * 5 3 2 8 8 C 1.53001 * 109.47166 * 205.00142 * 5 3 2 9 9 N 1.46510 * 109.46854 * 184.99830 * 8 5 3 10 10 C 1.34779 * 119.99515 * 179.97438 * 9 8 5 11 11 O 1.21549 * 119.99905 * 0.02562 * 10 9 8 12 12 C 1.47862 * 119.99407 * 179.97438 * 10 9 8 13 13 C 1.39665 * 120.10215 * 359.72695 * 12 10 9 14 14 C 1.38047 * 120.03510 * 179.78841 * 13 12 10 15 15 C 1.38173 * 120.24731 * 0.46411 * 14 13 12 16 16 C 1.39186 * 120.19924 * 359.79052 * 15 14 13 17 17 S 1.76199 * 120.02104 * 179.97438 * 16 15 14 18 18 C 1.76198 * 100.00032 * 265.52684 * 17 16 15 19 19 H 1.07997 * 120.00080 * 5.11911 * 18 17 16 20 20 C 1.38730 * 119.99686 * 185.11475 * 18 17 16 21 21 N 1.31627 * 120.00003 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00130 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47136 * 89.99727 * 22 20 18 24 24 H 1.48498 * 109.46922 * 209.99481 * 22 20 18 25 25 H 1.48491 * 109.47107 * 329.99422 * 22 20 18 26 26 C 1.38870 * 119.95713 * 359.97420 * 16 15 14 27 27 H 1.08993 * 109.47408 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46790 * 300.00277 * 1 2 3 29 29 H 1.09002 * 109.46952 * 59.99621 * 1 2 3 30 30 H 1.09003 * 109.47332 * 300.00028 * 6 5 3 31 31 H 1.09002 * 109.47273 * 60.00194 * 6 5 3 32 32 H 1.09002 * 109.47044 * 180.02562 * 6 5 3 33 33 H 0.96704 * 113.99544 * 299.99801 * 7 5 3 34 34 H 1.09002 * 109.47076 * 304.99258 * 8 5 3 35 35 H 1.08991 * 109.47099 * 64.99899 * 8 5 3 36 36 H 0.97000 * 120.00020 * 0.02562 * 9 8 5 37 37 H 1.07997 * 119.98483 * 359.97438 * 13 12 10 38 38 H 1.08007 * 119.87697 * 180.21054 * 14 13 12 39 39 H 1.07996 * 119.90232 * 179.76837 * 15 14 13 40 40 H 0.96996 * 120.00205 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.12171 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0817 1.1761 -1.4378 7 8 4.1000 0.1973 0.7717 8 6 4.0075 2.6068 0.6092 9 7 5.4629 2.7355 0.5003 10 6 6.0793 3.8366 0.9738 11 8 5.4278 4.7225 1.4916 12 6 7.5481 3.9662 0.8644 13 6 8.2994 2.9464 0.2759 14 6 9.6702 3.0708 0.1705 15 6 10.3060 4.1982 0.6542 16 6 9.5677 5.2182 1.2473 17 16 10.3835 6.6534 1.8632 18 6 10.5877 6.1889 3.5505 19 1 10.3053 5.1986 3.8760 20 6 11.1113 7.0953 4.4610 21 7 11.2634 6.7486 5.7216 22 14 11.5991 8.8084 3.8981 23 1 10.4372 9.7233 4.0326 24 1 12.7195 9.3047 4.7369 25 1 12.0285 8.7591 2.4775 26 6 8.1878 5.1040 1.3533 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.7674 0.2270 -1.8722 31 1 3.6746 1.9979 -2.0270 32 1 5.1702 1.2326 -1.4382 33 1 3.8147 0.1966 1.6957 34 1 3.5292 3.4273 0.0743 35 1 3.7175 2.6395 1.6593 36 1 5.9827 2.0286 0.0867 37 1 7.8074 2.0614 -0.0996 38 1 10.2483 2.2822 -0.2881 39 1 11.3791 4.2880 0.5722 40 1 11.6292 7.3824 6.3582 41 1 7.6123 5.8941 1.8127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362409486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:35 Heat of formation + Delta-G solvation = -141.886855 kcal Electronic energy + Delta-G solvation = -26065.083529 eV Core-core repulsion = 22036.648093 eV Total energy + Delta-G solvation = -4028.435436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39361 -40.06569 -38.45008 -37.66196 -37.00853 -34.70381 -32.50147 -32.11800 -30.86568 -30.59602 -28.37776 -27.32745 -25.68344 -24.54085 -23.16167 -22.28525 -20.93342 -20.58083 -19.00629 -18.62360 -17.54324 -17.42499 -17.04117 -16.21505 -16.01398 -15.74990 -15.45110 -15.16561 -14.89989 -14.68751 -14.60859 -14.27871 -13.76653 -13.56585 -13.46271 -13.10933 -13.03757 -12.92430 -12.90493 -12.59495 -12.30235 -12.21105 -11.96874 -11.39142 -11.34270 -11.32061 -11.21555 -11.10104 -10.65094 -10.58469 -9.98571 -9.86823 -9.33208 -9.21093 -9.08513 -8.67446 -8.17470 -7.14060 -6.33152 -4.08785 1.07105 1.51428 1.57194 1.92225 2.84440 2.97840 3.07377 3.27370 3.38510 3.43478 3.49872 3.85245 4.03856 4.10679 4.21806 4.26051 4.61592 4.69781 4.73439 4.89090 4.98850 5.02094 5.05476 5.05977 5.09749 5.16084 5.19541 5.37542 5.49212 5.64339 5.76639 5.77630 5.88764 6.12980 6.16881 6.48349 6.55021 6.76476 6.80970 7.08218 7.16439 7.35492 7.90984 8.17766 8.44381 9.10663 10.76232 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.002199 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.271794 B =12732.771425 C =13249.444876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.345 6.345 3 C 0.440 3.560 4 O -0.491 6.491 5 C 0.140 3.860 6 C -0.143 4.143 7 O -0.532 6.532 8 C 0.106 3.894 9 N -0.726 5.726 10 C 0.566 3.434 11 O -0.530 6.530 12 C -0.152 4.152 13 C -0.085 4.085 14 C -0.139 4.139 15 C -0.050 4.050 16 C -0.086 4.086 17 S -0.112 6.112 18 C -0.509 4.509 19 H 0.091 0.909 20 C 0.095 3.905 21 N -0.875 5.875 22 Si 0.858 3.142 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.239 1.239 26 C -0.016 4.016 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.389 0.611 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.403 0.597 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.272 0.728 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 -16.455 -15.197 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.261 6.261 3 C 0.280 3.720 4 O -0.377 6.377 5 C 0.097 3.903 6 C -0.200 4.200 7 O -0.338 6.338 8 C -0.019 4.019 9 N -0.381 5.381 10 C 0.354 3.646 11 O -0.406 6.406 12 C -0.157 4.157 13 C -0.104 4.104 14 C -0.159 4.159 15 C -0.071 4.071 16 C -0.196 4.196 17 S 0.122 5.878 18 C -0.656 4.656 19 H 0.109 0.891 20 C -0.114 4.114 21 N -0.512 5.512 22 Si 0.683 3.317 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.163 1.163 26 C -0.037 4.037 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.238 0.762 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.241 0.759 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.082 0.918 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.171 -14.598 -15.692 26.848 hybrid contribution -0.515 -0.631 1.095 1.365 sum -16.686 -15.230 -14.597 26.897 Atomic orbital electron populations 1.23370 0.75994 1.04072 1.02815 1.86576 1.23559 1.32591 1.83345 1.24478 0.92430 0.81946 0.73135 1.90745 1.66823 1.36268 1.43874 1.21278 0.84551 0.88488 0.95992 1.21843 1.03318 1.04360 0.90515 1.86634 1.72824 1.47926 1.26464 1.21737 0.82136 0.95744 1.02262 1.45730 1.06771 1.22130 1.63512 1.18375 0.87651 0.81176 0.77353 1.90801 1.66696 1.39927 1.43178 1.19762 0.91825 0.97678 1.06454 1.21177 0.94442 0.97018 0.97746 1.21054 0.94186 0.98506 1.02132 1.21912 1.00404 0.91527 0.93272 1.22204 0.95212 1.00810 1.01394 1.83079 1.73066 1.19648 1.11993 1.22243 1.49516 1.03968 0.89882 0.89063 1.24751 0.94086 0.98612 0.93990 1.69924 1.42956 1.36263 1.02016 0.86727 0.79537 0.84401 0.81066 1.19023 1.19798 1.16337 1.21902 0.93746 0.95652 0.92431 0.87723 0.91628 0.91679 0.90076 0.89697 0.89634 0.76224 0.88722 0.90280 0.75916 0.86293 0.85541 0.84864 0.91802 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.23 16 2 O -0.34 -2.72 10.32 -44.41 -0.46 -3.18 16 3 C 0.44 3.94 6.80 36.00 0.24 4.19 16 4 O -0.49 -5.72 15.74 -18.76 -0.30 -6.02 16 5 C 0.14 1.08 1.02 -91.77 -0.09 0.98 16 6 C -0.14 -0.88 8.60 37.16 0.32 -0.56 16 7 O -0.53 -3.74 12.72 -49.12 -0.62 -4.37 16 8 C 0.11 1.07 4.45 -4.04 -0.02 1.05 16 9 N -0.73 -7.90 5.14 -61.24 -0.31 -8.22 16 10 C 0.57 8.81 7.77 -12.32 -0.10 8.72 16 11 O -0.53 -10.32 16.34 5.32 0.09 -10.24 16 12 C -0.15 -2.46 5.87 -105.00 -0.62 -3.08 16 13 C -0.08 -1.09 9.54 -39.12 -0.37 -1.47 16 14 C -0.14 -1.88 10.02 -39.68 -0.40 -2.27 16 15 C -0.05 -0.86 9.79 -39.25 -0.38 -1.24 16 16 C -0.09 -1.76 5.45 -39.00 -0.21 -1.97 16 17 S -0.11 -2.70 19.38 -107.50 -2.08 -4.78 16 18 C -0.51 -14.57 10.01 30.91 0.31 -14.27 16 19 H 0.09 2.83 8.02 -52.49 -0.42 2.41 16 20 C 0.09 2.72 5.50 -17.46 -0.10 2.63 16 21 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 22 Si 0.86 21.02 27.74 -169.99 -4.71 16.31 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 26 C -0.02 -0.31 9.34 -38.92 -0.36 -0.67 16 27 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.45 6.57 -51.93 -0.34 0.11 16 33 H 0.39 1.74 9.04 45.56 0.41 2.15 16 34 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 3.40 5.02 -40.82 -0.20 3.19 16 37 H 0.12 1.05 6.40 -52.49 -0.34 0.71 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 39 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.14 3.00 7.65 -52.48 -0.40 2.59 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -35.69 370.65 -6.98 -42.67 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.23 Total: 4.47 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.71 Total: -6.74 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.46 Total: -33.72 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -1.29 Total: -23.80 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.08 Total: -4.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.69 -6.98 -42.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362409486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.215 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds