Wall clock time and date at job start Tue Mar 31 2020 21:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48492 * 109.47446 * 269.99919 * 3 2 1 5 5 H 1.48505 * 109.46998 * 30.00024 * 3 2 1 6 6 H 1.48502 * 109.46979 * 149.99930 * 3 2 1 7 7 C 1.37881 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46889 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.46938 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54180 * 68.37735 * 11 10 9 13 13 O 1.42096 * 110.54117 * 291.62560 * 11 10 9 14 14 N 1.65606 * 104.44751 * 180.02562 * 11 10 9 15 15 C 1.46530 * 124.95352 * 269.72041 * 14 11 10 16 16 C 1.53752 * 105.18142 * 180.26700 * 15 14 11 17 17 H 1.09004 * 110.41947 * 118.76605 * 16 15 14 18 18 C 1.53004 * 110.52496 * 241.18427 * 16 15 14 19 19 C 1.50704 * 109.46985 * 289.48826 * 18 16 15 20 20 O 1.20820 * 119.99903 * 354.40646 * 19 18 16 21 21 O 1.34227 * 119.99915 * 174.40344 * 19 18 16 22 22 C 1.51213 * 104.53750 * 0.02562 * 16 15 14 23 23 C 1.38177 * 130.98683 * 180.02562 * 22 16 15 24 24 C 1.38225 * 120.15508 * 180.02562 * 23 22 16 25 25 C 1.38308 * 119.83097 * 359.97438 * 24 23 22 26 26 C 1.37824 * 120.22983 * 359.97438 * 25 24 23 27 27 C 1.38592 * 108.54318 * 359.97438 * 22 16 15 28 28 H 0.97003 * 119.99985 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46995 * 60.00635 * 9 7 2 30 30 H 1.08997 * 109.47799 * 300.00302 * 9 7 2 31 31 H 1.09003 * 109.47276 * 60.00212 * 10 9 7 32 32 H 1.09002 * 109.47578 * 300.00131 * 10 9 7 33 33 H 1.09004 * 110.30220 * 299.19290 * 15 14 11 34 34 H 1.09006 * 110.30299 * 61.34143 * 15 14 11 35 35 H 1.08999 * 109.47003 * 49.48557 * 18 16 15 36 36 H 1.08994 * 109.47074 * 169.48829 * 18 16 15 37 37 H 0.96694 * 117.00329 * 180.02562 * 21 19 18 38 38 H 1.08001 * 119.91898 * 359.97438 * 23 22 16 39 39 H 1.07994 * 120.08717 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.88099 * 179.97438 * 25 24 23 41 41 H 1.08006 * 119.85527 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6647 -5.4193 -1.2386 13 8 0.6638 -5.4200 1.2354 14 7 2.5205 -6.3928 -0.0005 15 6 3.1165 -6.9847 -1.2011 16 6 4.1460 -8.0011 -0.6803 17 1 3.8890 -9.0069 -1.0125 18 6 5.5534 -7.6280 -1.1505 19 6 5.6674 -7.8676 -2.6340 20 8 4.7561 -8.3869 -3.2338 21 8 6.7812 -7.5040 -3.2889 22 6 4.0486 -7.9023 0.8255 23 6 4.7295 -8.5727 1.8236 24 6 4.4576 -8.3027 3.1517 25 6 3.5018 -7.3585 3.4801 26 6 2.8208 -6.6864 2.4881 27 6 3.0899 -6.9535 1.1438 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8895 32 1 2.8720 -3.6044 -0.8905 33 1 2.3529 -7.4894 -1.7930 34 1 3.6109 -6.2167 -1.7960 35 1 5.7407 -6.5757 -0.9369 36 1 6.2861 -8.2413 -0.6260 37 1 6.8078 -7.6776 -4.2397 38 1 5.4752 -9.3100 1.5654 39 1 4.9901 -8.8276 3.9309 40 1 3.2885 -7.1471 4.5175 41 1 2.0759 -5.9499 2.7515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363260174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:36 Heat of formation + Delta-G solvation = -137.097809 kcal Electronic energy + Delta-G solvation = -27426.281604 eV Core-core repulsion = 23398.053837 eV Total energy + Delta-G solvation = -4028.227767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12496 -40.12246 -37.06057 -36.65175 -36.28135 -35.66118 -33.98453 -33.72408 -31.25670 -30.36646 -29.58693 -27.55373 -25.68551 -23.38188 -23.03912 -21.91263 -21.53596 -20.50077 -19.05840 -18.38879 -17.74825 -17.11499 -16.70722 -16.62359 -16.09414 -15.79268 -15.72220 -15.23395 -14.99523 -14.68086 -14.47913 -13.89317 -13.55285 -13.46964 -13.32296 -12.95180 -12.74300 -12.60988 -12.50511 -12.22185 -11.85307 -11.84418 -11.79642 -11.69421 -11.55980 -11.38067 -11.13337 -11.05544 -10.90495 -10.76376 -10.65906 -10.46928 -10.42117 -9.79662 -9.27789 -8.91136 -8.55616 -7.94596 -6.17634 -4.23849 0.44816 1.25112 1.37087 1.89905 2.69207 2.72407 3.23139 3.29554 3.32157 3.66039 4.04996 4.06576 4.12636 4.32914 4.43095 4.49283 4.73959 4.88295 4.91456 5.02553 5.14317 5.17543 5.18028 5.22828 5.38854 5.45403 5.51057 5.58186 5.65445 5.75178 5.81209 6.06842 6.19559 6.24595 6.35322 6.37971 6.49357 6.57448 6.97424 7.20787 7.26271 7.57535 7.74869 8.10006 8.79230 9.41339 10.93336 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.003657 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.741893 B = 7654.855318 C = 8740.924850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.581 4.581 11 S 2.583 3.417 12 O -0.949 6.949 13 O -0.947 6.947 14 N -0.944 5.944 15 C 0.121 3.879 16 C -0.036 4.036 17 H 0.107 0.893 18 C -0.106 4.106 19 C 0.477 3.523 20 O -0.510 6.510 21 O -0.517 6.517 22 C -0.141 4.141 23 C -0.073 4.073 24 C -0.152 4.152 25 C -0.081 4.081 26 C -0.153 4.153 27 C 0.179 3.821 28 H 0.266 0.734 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.411 0.589 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.518 -18.289 0.970 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.715 4.715 11 S 2.684 3.316 12 O -0.940 6.940 13 O -0.938 6.938 14 N -0.764 5.764 15 C -0.004 4.004 16 C -0.055 4.055 17 H 0.125 0.875 18 C -0.143 4.143 19 C 0.319 3.681 20 O -0.398 6.398 21 O -0.330 6.330 22 C -0.146 4.146 23 C -0.092 4.092 24 C -0.171 4.171 25 C -0.099 4.099 26 C -0.174 4.174 27 C 0.081 3.919 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.270 0.730 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.019 -18.355 1.095 22.530 hybrid contribution 0.989 1.165 -0.756 1.705 sum 14.008 -17.190 0.340 22.177 Atomic orbital electron populations 1.69950 1.06137 1.27324 1.49322 1.25063 0.94980 0.99569 0.94768 0.86450 0.79717 0.82734 0.78286 1.20419 1.20933 1.19709 1.20965 0.93075 0.89551 1.52501 0.91960 1.19001 0.92621 0.90368 0.99053 1.30453 1.13745 1.16872 1.10462 1.06224 0.74417 0.76403 0.74519 1.93569 1.70334 1.85065 1.45006 1.93537 1.70566 1.84966 1.44710 1.56751 1.55730 1.53615 1.10314 1.21949 0.96379 0.95911 0.86114 1.20458 0.92588 1.01154 0.91315 0.87453 1.21493 0.98945 1.06124 0.87787 1.23498 0.79119 0.74200 0.91290 1.90761 1.39486 1.40052 1.69480 1.84533 1.41826 1.77761 1.28837 1.19886 1.00329 1.00469 0.93914 1.20326 0.98686 0.98526 0.91658 1.20968 1.00168 1.00250 0.95739 1.20907 0.94910 0.95117 0.98994 1.21129 1.02972 1.03931 0.89366 1.18077 0.93147 0.93486 0.87178 0.92435 0.94735 0.94640 0.85784 0.86015 0.88687 0.90296 0.86909 0.86664 0.72968 0.85969 0.85741 0.85284 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.58 -11.10 6.12 37.16 0.23 -10.87 16 11 S 2.58 47.82 5.56 -107.50 -0.60 47.22 16 12 O -0.95 -20.05 17.56 -57.54 -1.01 -21.06 16 13 O -0.95 -19.37 15.25 -57.54 -0.88 -20.25 16 14 N -0.94 -14.13 3.40 -58.12 -0.20 -14.33 16 15 C 0.12 1.54 5.99 -3.63 -0.02 1.52 16 16 C -0.04 -0.36 2.62 -91.13 -0.24 -0.60 16 17 H 0.11 1.04 7.79 -51.93 -0.40 0.63 16 18 C -0.11 -0.80 5.12 -27.88 -0.14 -0.94 16 19 C 0.48 4.18 7.96 36.01 0.29 4.47 16 20 O -0.51 -6.03 16.14 -18.75 -0.30 -6.33 16 21 O -0.52 -3.53 13.42 -39.25 -0.53 -4.05 16 22 C -0.14 -1.57 5.55 -104.26 -0.58 -2.15 16 23 C -0.07 -0.67 10.03 -39.61 -0.40 -1.07 16 24 C -0.15 -1.40 10.06 -39.56 -0.40 -1.80 16 25 C -0.08 -0.88 10.02 -39.71 -0.40 -1.28 16 26 C -0.15 -2.12 9.37 -39.20 -0.37 -2.49 16 27 C 0.18 2.50 6.59 -83.67 -0.55 1.95 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 32 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 0.90 7.54 -51.93 -0.39 0.51 16 35 H 0.11 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.41 1.24 9.10 45.56 0.41 1.66 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.15 2.25 6.12 -52.48 -0.32 1.93 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -36.27 362.19 -9.94 -46.21 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.47 Total: 2.28 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -3.13 Total: -25.64 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.54 Total: -39.74 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -2.72 Total: -51.70 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 47.82 SS G_CDS: -0.60 Total: 47.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.27 -9.94 -46.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363260174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.893 kcal (2) G-P(sol) polarization free energy of solvation -36.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds