Wall clock time and date at job start Tue Mar 31 2020 21:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48492 * 109.47446 * 269.99919 * 3 2 1 5 5 H 1.48505 * 109.46998 * 30.00024 * 3 2 1 6 6 H 1.48502 * 109.46979 * 149.99930 * 3 2 1 7 7 C 1.37881 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46889 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.46938 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54180 * 68.37735 * 11 10 9 13 13 O 1.42096 * 110.54117 * 291.62560 * 11 10 9 14 14 N 1.65606 * 104.44751 * 180.02562 * 11 10 9 15 15 C 1.46530 * 124.95352 * 269.72041 * 14 11 10 16 16 C 1.53752 * 105.18142 * 180.26700 * 15 14 11 17 17 H 1.09004 * 110.41947 * 118.76605 * 16 15 14 18 18 C 1.53004 * 110.52496 * 241.18427 * 16 15 14 19 19 C 1.50704 * 109.46985 * 289.48826 * 18 16 15 20 20 O 1.20820 * 119.99903 * 354.40646 * 19 18 16 21 21 O 1.34227 * 119.99915 * 174.40344 * 19 18 16 22 22 C 1.51213 * 104.53750 * 0.02562 * 16 15 14 23 23 C 1.38177 * 130.98683 * 180.02562 * 22 16 15 24 24 C 1.38225 * 120.15508 * 180.02562 * 23 22 16 25 25 C 1.38308 * 119.83097 * 359.97438 * 24 23 22 26 26 C 1.37824 * 120.22983 * 359.97438 * 25 24 23 27 27 C 1.38592 * 108.54318 * 359.97438 * 22 16 15 28 28 H 0.97003 * 119.99985 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46995 * 60.00635 * 9 7 2 30 30 H 1.08997 * 109.47799 * 300.00302 * 9 7 2 31 31 H 1.09003 * 109.47276 * 60.00212 * 10 9 7 32 32 H 1.09002 * 109.47578 * 300.00131 * 10 9 7 33 33 H 1.09004 * 110.30220 * 299.19290 * 15 14 11 34 34 H 1.09006 * 110.30299 * 61.34143 * 15 14 11 35 35 H 1.08999 * 109.47003 * 49.48557 * 18 16 15 36 36 H 1.08994 * 109.47074 * 169.48829 * 18 16 15 37 37 H 0.96694 * 117.00329 * 180.02562 * 21 19 18 38 38 H 1.08001 * 119.91898 * 359.97438 * 23 22 16 39 39 H 1.07994 * 120.08717 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.88099 * 179.97438 * 25 24 23 41 41 H 1.08006 * 119.85527 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6647 -5.4193 -1.2386 13 8 0.6638 -5.4200 1.2354 14 7 2.5205 -6.3928 -0.0005 15 6 3.1165 -6.9847 -1.2011 16 6 4.1460 -8.0011 -0.6803 17 1 3.8890 -9.0069 -1.0125 18 6 5.5534 -7.6280 -1.1505 19 6 5.6674 -7.8676 -2.6340 20 8 4.7561 -8.3869 -3.2338 21 8 6.7812 -7.5040 -3.2889 22 6 4.0486 -7.9023 0.8255 23 6 4.7295 -8.5727 1.8236 24 6 4.4576 -8.3027 3.1517 25 6 3.5018 -7.3585 3.4801 26 6 2.8208 -6.6864 2.4881 27 6 3.0899 -6.9535 1.1438 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8895 32 1 2.8720 -3.6044 -0.8905 33 1 2.3529 -7.4894 -1.7930 34 1 3.6109 -6.2167 -1.7960 35 1 5.7407 -6.5757 -0.9369 36 1 6.2861 -8.2413 -0.6260 37 1 6.8078 -7.6776 -4.2397 38 1 5.4752 -9.3100 1.5654 39 1 4.9901 -8.8276 3.9309 40 1 3.2885 -7.1471 4.5175 41 1 2.0759 -5.9499 2.7515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363260174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:35 Heat of formation + Delta-G solvation = -162.928872 kcal Electronic energy + Delta-G solvation = -27427.401723 eV Core-core repulsion = 23398.053837 eV Total energy + Delta-G solvation = -4029.347886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94404 -40.86173 -38.50817 -37.58601 -37.27119 -36.99111 -35.97645 -34.59226 -33.22531 -31.13918 -30.49305 -28.41027 -27.65614 -24.23720 -24.15721 -23.32216 -22.65074 -21.25420 -20.34893 -19.27016 -19.01206 -18.44780 -17.87559 -17.68280 -17.29333 -16.94623 -16.62265 -16.54867 -16.43322 -16.01499 -15.56212 -15.29557 -14.74594 -14.52059 -14.19762 -14.05223 -13.84042 -13.76037 -13.69214 -13.56978 -13.42249 -13.27275 -13.00135 -12.97742 -12.87084 -12.50028 -12.36527 -12.34480 -12.25300 -12.19180 -11.85306 -11.70657 -11.57804 -11.52085 -11.11440 -10.68188 -9.73847 -8.91716 -8.29362 -6.44295 -1.04563 0.42621 0.49745 1.26994 1.37956 1.39970 1.41813 1.53150 2.17162 2.35582 2.57372 2.82586 2.88925 3.04271 3.14293 3.49866 3.69032 3.79923 3.91306 3.96320 4.10736 4.21259 4.33356 4.47209 4.50462 4.53248 4.61133 4.63588 4.66115 4.73678 4.92480 5.03260 5.16599 5.17015 5.20771 5.37269 5.53900 5.62457 5.63535 5.69403 5.71032 5.99837 6.14247 6.68534 7.04674 7.26307 8.82960 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010710 B = 0.003657 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.741893 B = 7654.855318 C = 8740.924850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.022 3.978 10 C -0.576 4.576 11 S 2.607 3.393 12 O -0.982 6.982 13 O -0.974 6.974 14 N -0.941 5.941 15 C 0.107 3.893 16 C -0.027 4.027 17 H 0.113 0.887 18 C -0.101 4.101 19 C 0.482 3.518 20 O -0.548 6.548 21 O -0.514 6.514 22 C -0.133 4.133 23 C -0.065 4.065 24 C -0.139 4.139 25 C -0.087 4.087 26 C -0.182 4.182 27 C 0.140 3.860 28 H 0.268 0.732 29 H 0.008 0.992 30 H 0.010 0.990 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.150 0.850 37 H 0.427 0.573 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.146 0.854 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.654 -19.634 1.651 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.017 4.017 10 C -0.710 4.710 11 S 2.708 3.292 12 O -0.973 6.973 13 O -0.964 6.964 14 N -0.765 5.765 15 C -0.017 4.017 16 C -0.046 4.046 17 H 0.131 0.869 18 C -0.139 4.139 19 C 0.326 3.674 20 O -0.439 6.439 21 O -0.328 6.328 22 C -0.137 4.137 23 C -0.083 4.083 24 C -0.158 4.158 25 C -0.105 4.105 26 C -0.204 4.204 27 C 0.044 3.956 28 H 0.077 0.923 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.168 0.832 37 H 0.289 0.711 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.164 0.836 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.183 -19.696 1.775 26.198 hybrid contribution -0.236 1.447 -0.929 1.736 sum 16.947 -18.249 0.845 24.919 Atomic orbital electron populations 1.70099 1.08124 1.28469 1.50598 1.26120 0.95852 1.03904 0.94166 0.85286 0.78659 0.77467 0.78701 1.19529 1.20741 1.18052 1.21460 0.93987 0.90482 1.51966 0.90509 1.18842 0.93454 0.92790 0.96585 1.30305 1.12794 1.15325 1.12536 1.05156 0.74443 0.76425 0.73188 1.93517 1.71792 1.85653 1.46300 1.93499 1.71938 1.85399 1.45605 1.56216 1.55627 1.52705 1.11910 1.22238 0.96970 0.96993 0.85467 1.20399 0.93270 1.00387 0.90574 0.86890 1.21515 0.97830 1.07267 0.87246 1.23695 0.78796 0.73206 0.91740 1.90762 1.40802 1.41975 1.70344 1.84496 1.40779 1.77180 1.30298 1.20080 0.99356 0.99493 0.94807 1.20807 0.98416 0.98129 0.90935 1.21423 0.98729 0.98753 0.96889 1.21189 0.95001 0.95184 0.99162 1.21146 1.03848 1.04908 0.90466 1.18354 0.95086 0.95518 0.86643 0.92279 0.97410 0.97218 0.83850 0.83774 0.90107 0.89241 0.86153 0.83217 0.71111 0.81869 0.82170 0.83648 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.98 43.00 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 9 C 0.02 1.19 4.98 29.85 0.15 1.33 16 10 C -0.58 -22.68 6.12 71.98 0.44 -22.24 16 11 S 2.61 101.82 5.56 -56.49 -0.31 101.51 16 12 O -0.98 -43.92 17.56 -127.65 -2.24 -46.16 16 13 O -0.97 -42.64 15.25 -127.65 -1.95 -44.59 16 14 N -0.94 -28.70 3.40 -337.78 -1.15 -29.85 16 15 C 0.11 2.70 5.99 86.63 0.52 3.22 16 16 C -0.03 -0.48 2.62 -11.12 -0.03 -0.51 16 17 H 0.11 1.93 7.79 -2.39 -0.02 1.91 16 18 C -0.10 -1.18 5.12 29.85 0.15 -1.02 16 19 C 0.48 7.27 7.96 71.24 0.57 7.83 16 20 O -0.55 -12.27 16.14 21.98 0.35 -11.91 16 21 O -0.51 -5.56 13.42 -51.39 -0.69 -6.25 16 22 C -0.13 -2.60 5.55 -19.63 -0.11 -2.71 16 23 C -0.06 -0.88 10.03 22.25 0.22 -0.65 16 24 C -0.14 -1.97 10.06 22.28 0.22 -1.74 16 25 C -0.09 -1.74 10.02 22.19 0.22 -1.52 16 26 C -0.18 -5.10 9.37 22.52 0.21 -4.89 16 27 C 0.14 3.86 6.59 38.34 0.25 4.11 16 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.14 5.01 8.14 -2.39 -0.02 4.99 16 32 H 0.14 4.93 8.14 -2.39 -0.02 4.91 16 33 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.09 2.00 7.54 -2.38 -0.02 1.98 16 35 H 0.12 1.30 8.10 -2.39 -0.02 1.28 16 36 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.43 1.58 9.10 -74.06 -0.67 0.91 16 38 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 39 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.12 3.91 6.12 -2.91 -0.02 3.89 16 Total: -1.00 -82.80 362.19 0.24 -82.56 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.39 Total: 14.26 kcal Atomic # 6 Polarization: -51.64 SS G_CDS: 3.52 Total: -48.12 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -0.86 Total: -86.34 kcal Atomic # 8 Polarization: -104.39 SS G_CDS: -4.52 Total: -108.91 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 101.82 SS G_CDS: -0.31 Total: 101.51 kcal Total: -82.80 0.24 -82.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363260174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.366 kcal (2) G-P(sol) polarization free energy of solvation -82.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds