Wall clock time and date at job start Tue Mar 31 2020 21:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47132 * 239.99913 * 3 2 1 5 5 H 1.48500 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47694 * 119.99672 * 3 2 1 7 7 C 1.37881 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46977 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47244 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54123 * 68.37791 * 11 10 9 13 13 O 1.42102 * 110.54537 * 291.63228 * 11 10 9 14 14 N 1.65596 * 104.45149 * 180.02562 * 11 10 9 15 15 C 1.46531 * 124.95666 * 269.71797 * 14 11 10 16 16 C 1.53752 * 105.18486 * 179.89468 * 15 14 11 17 17 H 1.08997 * 110.71766 * 241.44858 * 16 15 14 18 18 C 1.52992 * 110.23235 * 119.02324 * 16 15 14 19 19 C 1.50705 * 109.47283 * 70.68304 * 18 16 15 20 20 O 1.20822 * 119.99476 * 5.62286 * 19 18 16 21 21 O 1.34226 * 120.00252 * 185.61799 * 19 18 16 22 22 C 1.51226 * 104.53538 * 0.35427 * 16 15 14 23 23 C 1.38174 * 130.98187 * 179.74464 * 22 16 15 24 24 C 1.38227 * 120.14773 * 180.02562 * 23 22 16 25 25 C 1.38310 * 119.83507 * 359.97438 * 24 23 22 26 26 C 1.37825 * 120.22953 * 0.02562 * 25 24 23 27 27 C 1.38596 * 108.53833 * 359.77631 * 22 16 15 28 28 H 0.97001 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46737 * 60.00353 * 9 7 2 30 30 H 1.08998 * 109.47357 * 300.00119 * 9 7 2 31 31 H 1.08998 * 109.46871 * 60.00698 * 10 9 7 32 32 H 1.08998 * 109.47495 * 300.00428 * 10 9 7 33 33 H 1.08992 * 110.30267 * 298.95300 * 15 14 11 34 34 H 1.09001 * 110.29442 * 61.10099 * 15 14 11 35 35 H 1.08998 * 109.47466 * 190.68684 * 18 16 15 36 36 H 1.09003 * 109.47655 * 310.68551 * 18 16 15 37 37 H 0.96698 * 116.99655 * 180.02562 * 21 19 18 38 38 H 1.07989 * 119.92820 * 0.02562 * 23 22 16 39 39 H 1.08005 * 120.08545 * 179.97438 * 24 23 22 40 40 H 1.07999 * 119.88524 * 179.97438 * 25 24 23 41 41 H 1.08003 * 119.85948 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2331 -0.0002 12 8 0.6647 -5.4194 -1.2375 13 8 0.6636 -5.4201 1.2364 14 7 2.5203 -6.3927 0.0006 15 6 3.1164 -6.9848 -1.2000 16 6 4.1526 -7.9943 -0.6792 17 1 5.1549 -7.7244 -1.0119 18 6 3.7977 -9.4066 -1.1485 19 6 4.0379 -9.5182 -2.6321 20 8 4.5455 -8.6008 -3.2325 21 8 3.6881 -10.6368 -3.2863 22 6 4.0528 -7.8980 0.8267 23 6 4.7339 -8.5683 1.8247 24 6 4.4594 -8.3008 3.1528 25 6 3.5009 -7.3593 3.4812 26 6 2.8189 -6.6881 2.4893 27 6 3.0900 -6.9532 1.1449 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8898 30 1 0.6239 -2.5567 0.8902 31 1 2.8717 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8894 33 1 2.3536 -7.4931 -1.7896 34 1 3.6071 -6.2161 -1.7969 35 1 4.4206 -10.1311 -0.6240 36 1 2.7480 -9.6076 -0.9344 37 1 3.8624 -10.6619 -4.2372 38 1 5.4822 -9.3028 1.5666 39 1 4.9920 -8.8257 3.9321 40 1 3.2855 -7.1500 4.5186 41 1 2.0714 -5.9544 2.7525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363260175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:38 Heat of formation + Delta-G solvation = -137.039474 kcal Electronic energy + Delta-G solvation = -27335.804705 eV Core-core repulsion = 23307.579468 eV Total energy + Delta-G solvation = -4028.225238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12980 -40.12825 -37.06411 -36.65591 -36.28835 -35.66513 -33.96709 -33.73266 -31.23978 -30.37012 -29.58690 -27.54965 -25.67252 -23.38528 -23.03983 -21.92735 -21.52393 -20.48619 -19.05575 -18.40015 -17.73730 -17.15331 -16.81486 -16.51183 -16.08750 -15.80467 -15.70787 -15.25056 -14.94642 -14.68637 -14.50589 -13.86256 -13.56246 -13.47765 -13.33607 -12.94731 -12.74826 -12.57962 -12.54009 -12.18531 -11.85750 -11.83808 -11.79944 -11.69961 -11.55904 -11.40450 -11.10270 -11.04747 -10.90938 -10.75402 -10.67340 -10.45215 -10.42018 -9.77878 -9.27352 -8.91166 -8.53817 -7.94685 -6.16146 -4.22254 0.45340 1.25198 1.37136 1.89181 2.68600 2.71807 3.25848 3.30585 3.32549 3.65974 4.04253 4.07223 4.12225 4.34250 4.43398 4.49191 4.72728 4.88514 4.93246 5.02612 5.13405 5.18101 5.18962 5.22513 5.39092 5.44490 5.52499 5.60298 5.64738 5.73783 5.81539 6.06788 6.18372 6.24528 6.37437 6.38204 6.49316 6.57458 6.97375 7.22008 7.27633 7.56391 7.76484 8.11701 8.80664 9.42787 10.94813 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.003346 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.056800 B = 8367.418167 C = 9401.495282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.581 4.581 11 S 2.584 3.416 12 O -0.950 6.950 13 O -0.948 6.948 14 N -0.944 5.944 15 C 0.120 3.880 16 C -0.036 4.036 17 H 0.109 0.891 18 C -0.105 4.105 19 C 0.477 3.523 20 O -0.509 6.509 21 O -0.518 6.518 22 C -0.141 4.141 23 C -0.073 4.073 24 C -0.152 4.152 25 C -0.081 4.081 26 C -0.153 4.153 27 C 0.179 3.821 28 H 0.266 0.734 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.411 0.589 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.748 -22.105 0.970 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.715 4.715 11 S 2.685 3.315 12 O -0.941 6.941 13 O -0.938 6.938 14 N -0.764 5.764 15 C -0.004 4.004 16 C -0.055 4.055 17 H 0.127 0.873 18 C -0.143 4.143 19 C 0.319 3.681 20 O -0.397 6.397 21 O -0.330 6.330 22 C -0.146 4.146 23 C -0.092 4.092 24 C -0.171 4.171 25 C -0.099 4.099 26 C -0.174 4.174 27 C 0.081 3.919 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.270 0.730 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.573 -21.837 1.090 23.868 hybrid contribution 1.081 1.241 -0.747 1.807 sum 10.654 -20.596 0.344 23.191 Atomic orbital electron populations 1.69940 1.06130 1.27424 1.49297 1.25063 0.94993 0.99569 0.94768 0.86502 0.79491 0.82365 0.78781 1.20024 1.21020 1.20004 1.20939 0.93081 0.89571 1.52552 0.91981 1.18995 0.92611 0.90372 0.99020 1.30443 1.13729 1.16751 1.10580 1.06205 0.74380 0.76442 0.74482 1.93564 1.70401 1.85104 1.45034 1.93537 1.70600 1.84986 1.44706 1.56745 1.55795 1.53565 1.10311 1.21953 0.95495 0.96832 0.86132 1.20467 1.01062 0.92676 0.91331 0.87297 1.21490 1.06042 0.98986 0.87797 1.23491 0.74104 0.79206 0.91281 1.90760 1.40230 1.39275 1.69429 1.84530 1.78185 1.41460 1.28856 1.19890 1.00093 1.00712 0.93911 1.20324 0.98516 0.98697 0.91658 1.20971 1.00113 1.00302 0.95739 1.20909 0.94929 0.95099 0.98995 1.21134 1.03025 1.03882 0.89362 1.18078 0.92905 0.93728 0.87177 0.92392 0.94746 0.94655 0.85785 0.85884 0.89793 0.89140 0.86695 0.87076 0.72978 0.85967 0.85741 0.85284 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.61 16 10 C -0.58 -11.29 6.12 37.16 0.23 -11.07 16 11 S 2.58 47.79 5.56 -107.50 -0.60 47.19 16 12 O -0.95 -19.91 17.56 -57.54 -1.01 -20.92 16 13 O -0.95 -19.26 15.25 -57.54 -0.88 -20.13 16 14 N -0.94 -14.12 3.40 -58.12 -0.20 -14.32 16 15 C 0.12 1.53 5.98 -3.63 -0.02 1.51 16 16 C -0.04 -0.36 2.64 -91.13 -0.24 -0.60 16 17 H 0.11 1.03 7.79 -51.93 -0.40 0.62 16 18 C -0.11 -0.81 5.11 -27.88 -0.14 -0.95 16 19 C 0.48 4.19 7.96 36.01 0.29 4.48 16 20 O -0.51 -6.02 16.14 -18.75 -0.30 -6.32 16 21 O -0.52 -3.47 13.42 -39.25 -0.53 -4.00 16 22 C -0.14 -1.57 5.55 -104.26 -0.58 -2.15 16 23 C -0.07 -0.67 10.04 -39.61 -0.40 -1.07 16 24 C -0.15 -1.40 10.06 -39.56 -0.40 -1.80 16 25 C -0.08 -0.88 10.02 -39.71 -0.40 -1.28 16 26 C -0.15 -2.12 9.37 -39.20 -0.37 -2.49 16 27 C 0.18 2.50 6.59 -83.66 -0.55 1.95 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.12 2.19 8.14 -51.93 -0.42 1.77 16 32 H 0.12 2.17 8.14 -51.92 -0.42 1.74 16 33 H 0.08 1.05 7.52 -51.93 -0.39 0.66 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.11 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.41 1.18 9.10 45.56 0.41 1.59 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.15 2.25 6.11 -52.48 -0.32 1.93 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -36.27 362.14 -9.94 -46.21 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.47 Total: 2.29 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -3.13 Total: -26.01 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.54 Total: -39.91 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -2.72 Total: -51.37 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 47.79 SS G_CDS: -0.60 Total: 47.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.27 -9.94 -46.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363260175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.829 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds