Wall clock time and date at job start Tue Mar 31 2020 21:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47132 * 239.99913 * 3 2 1 5 5 H 1.48500 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47694 * 119.99672 * 3 2 1 7 7 C 1.37881 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46977 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47244 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54123 * 68.37791 * 11 10 9 13 13 O 1.42102 * 110.54537 * 291.63228 * 11 10 9 14 14 N 1.65596 * 104.45149 * 180.02562 * 11 10 9 15 15 C 1.46531 * 124.95666 * 269.71797 * 14 11 10 16 16 C 1.53752 * 105.18486 * 179.89468 * 15 14 11 17 17 H 1.08997 * 110.71766 * 241.44858 * 16 15 14 18 18 C 1.52992 * 110.23235 * 119.02324 * 16 15 14 19 19 C 1.50705 * 109.47283 * 70.68304 * 18 16 15 20 20 O 1.20822 * 119.99476 * 5.62286 * 19 18 16 21 21 O 1.34226 * 120.00252 * 185.61799 * 19 18 16 22 22 C 1.51226 * 104.53538 * 0.35427 * 16 15 14 23 23 C 1.38174 * 130.98187 * 179.74464 * 22 16 15 24 24 C 1.38227 * 120.14773 * 180.02562 * 23 22 16 25 25 C 1.38310 * 119.83507 * 359.97438 * 24 23 22 26 26 C 1.37825 * 120.22953 * 0.02562 * 25 24 23 27 27 C 1.38596 * 108.53833 * 359.77631 * 22 16 15 28 28 H 0.97001 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46737 * 60.00353 * 9 7 2 30 30 H 1.08998 * 109.47357 * 300.00119 * 9 7 2 31 31 H 1.08998 * 109.46871 * 60.00698 * 10 9 7 32 32 H 1.08998 * 109.47495 * 300.00428 * 10 9 7 33 33 H 1.08992 * 110.30267 * 298.95300 * 15 14 11 34 34 H 1.09001 * 110.29442 * 61.10099 * 15 14 11 35 35 H 1.08998 * 109.47466 * 190.68684 * 18 16 15 36 36 H 1.09003 * 109.47655 * 310.68551 * 18 16 15 37 37 H 0.96698 * 116.99655 * 180.02562 * 21 19 18 38 38 H 1.07989 * 119.92820 * 0.02562 * 23 22 16 39 39 H 1.08005 * 120.08545 * 179.97438 * 24 23 22 40 40 H 1.07999 * 119.88524 * 179.97438 * 25 24 23 41 41 H 1.08003 * 119.85948 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2331 -0.0002 12 8 0.6647 -5.4194 -1.2375 13 8 0.6636 -5.4201 1.2364 14 7 2.5203 -6.3927 0.0006 15 6 3.1164 -6.9848 -1.2000 16 6 4.1526 -7.9943 -0.6792 17 1 5.1549 -7.7244 -1.0119 18 6 3.7977 -9.4066 -1.1485 19 6 4.0379 -9.5182 -2.6321 20 8 4.5455 -8.6008 -3.2325 21 8 3.6881 -10.6368 -3.2863 22 6 4.0528 -7.8980 0.8267 23 6 4.7339 -8.5683 1.8247 24 6 4.4594 -8.3008 3.1528 25 6 3.5009 -7.3593 3.4812 26 6 2.8189 -6.6881 2.4893 27 6 3.0900 -6.9532 1.1449 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8898 30 1 0.6239 -2.5567 0.8902 31 1 2.8717 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8894 33 1 2.3536 -7.4931 -1.7896 34 1 3.6071 -6.2161 -1.7969 35 1 4.4206 -10.1311 -0.6240 36 1 2.7480 -9.6076 -0.9344 37 1 3.8624 -10.6619 -4.2372 38 1 5.4822 -9.3028 1.5666 39 1 4.9920 -8.8257 3.9321 40 1 3.2855 -7.1500 4.5186 41 1 2.0714 -5.9544 2.7525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363260175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:38 Heat of formation + Delta-G solvation = -162.807419 kcal Electronic energy + Delta-G solvation = -27336.922087 eV Core-core repulsion = 23307.579468 eV Total energy + Delta-G solvation = -4029.342620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94858 -40.87025 -38.50826 -37.58964 -37.27431 -37.00233 -35.98437 -34.60234 -33.23242 -31.14551 -30.49300 -28.40442 -27.67142 -24.24225 -24.16094 -23.33695 -22.65165 -21.24999 -20.35542 -19.26613 -19.02996 -18.48084 -17.87197 -17.72321 -17.27640 -16.94813 -16.62156 -16.56193 -16.43877 -15.99029 -15.59226 -15.30245 -14.72283 -14.52607 -14.21219 -14.06060 -13.83335 -13.83207 -13.70105 -13.58622 -13.40338 -13.24590 -12.98540 -12.96717 -12.89053 -12.51867 -12.37974 -12.33591 -12.27687 -12.22003 -11.85195 -11.71209 -11.58374 -11.54104 -11.12413 -10.68366 -9.73883 -8.91875 -8.30350 -6.45304 -1.04582 0.42750 0.49791 1.25509 1.37405 1.38682 1.42265 1.50657 2.15586 2.34694 2.56018 2.82628 2.88767 3.02879 3.13951 3.49693 3.68995 3.79906 3.91373 3.95196 4.12302 4.20808 4.33741 4.44703 4.48801 4.50848 4.60819 4.63091 4.65824 4.72657 4.91509 5.03119 5.15898 5.16162 5.20514 5.37141 5.53761 5.62247 5.62517 5.67804 5.70918 5.99280 6.14173 6.67037 7.03143 7.25057 8.81724 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.003346 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.056800 B = 8367.418167 C = 9401.495282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.023 3.977 10 C -0.580 4.580 11 S 2.611 3.389 12 O -0.980 6.980 13 O -0.972 6.972 14 N -0.941 5.941 15 C 0.106 3.894 16 C -0.027 4.027 17 H 0.120 0.880 18 C -0.102 4.102 19 C 0.482 3.518 20 O -0.546 6.546 21 O -0.514 6.514 22 C -0.133 4.133 23 C -0.065 4.065 24 C -0.139 4.139 25 C -0.087 4.087 26 C -0.182 4.182 27 C 0.140 3.860 28 H 0.269 0.731 29 H 0.008 0.992 30 H 0.011 0.989 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.427 0.573 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.146 0.854 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.048 -24.248 1.622 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.093 0.907 9 C -0.016 4.016 10 C -0.713 4.713 11 S 2.712 3.288 12 O -0.971 6.971 13 O -0.962 6.962 14 N -0.765 5.765 15 C -0.018 4.018 16 C -0.047 4.047 17 H 0.137 0.863 18 C -0.140 4.140 19 C 0.326 3.674 20 O -0.436 6.436 21 O -0.328 6.328 22 C -0.137 4.137 23 C -0.083 4.083 24 C -0.158 4.158 25 C -0.106 4.106 26 C -0.204 4.204 27 C 0.044 3.956 28 H 0.078 0.922 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.168 0.832 36 H 0.131 0.869 37 H 0.289 0.711 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.163 0.837 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.875 -23.995 1.740 27.287 hybrid contribution 0.089 1.736 -0.911 1.962 sum 12.965 -22.259 0.829 25.773 Atomic orbital electron populations 1.70086 1.08053 1.28567 1.50449 1.26119 0.95896 1.03882 0.94127 0.85342 0.78167 0.77133 0.79503 1.18808 1.20689 1.18685 1.21436 0.93937 0.90641 1.52195 0.90732 1.18829 0.93406 0.92696 0.96629 1.30328 1.12869 1.15809 1.12323 1.05034 0.74324 0.76250 0.73234 1.93514 1.71720 1.85590 1.46249 1.93502 1.71850 1.85322 1.45553 1.56215 1.55689 1.52620 1.11929 1.22259 0.96275 0.97773 0.85483 1.20428 1.00437 0.93240 0.90570 0.86260 1.21512 1.06905 0.98111 0.87426 1.23656 0.73136 0.78937 0.91682 1.90757 1.42122 1.40523 1.70247 1.84492 1.77597 1.40381 1.30341 1.20088 0.99056 0.99759 0.94827 1.20806 0.98194 0.98356 0.90932 1.21427 0.98662 0.98811 0.96897 1.21190 0.95033 0.95166 0.99163 1.21151 1.03899 1.04860 0.90468 1.18356 0.94886 0.95744 0.86639 0.92220 0.97324 0.97107 0.84129 0.84049 0.90145 0.89048 0.83179 0.86876 0.71075 0.81855 0.82171 0.83650 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.98 43.67 29.54 68.60 2.03 45.70 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 8 H 0.07 3.91 7.74 -2.91 -0.02 3.88 16 9 C 0.02 1.26 4.98 29.85 0.15 1.41 16 10 C -0.58 -23.53 6.12 71.98 0.44 -23.09 16 11 S 2.61 101.88 5.56 -56.49 -0.31 101.56 16 12 O -0.98 -43.27 17.56 -127.65 -2.24 -45.51 16 13 O -0.97 -42.12 15.25 -127.65 -1.95 -44.07 16 14 N -0.94 -28.67 3.40 -337.79 -1.15 -29.82 16 15 C 0.11 2.66 5.98 86.63 0.52 3.18 16 16 C -0.03 -0.48 2.64 -11.12 -0.03 -0.51 16 17 H 0.12 1.92 7.79 -2.39 -0.02 1.90 16 18 C -0.10 -1.26 5.11 29.85 0.15 -1.10 16 19 C 0.48 7.42 7.96 71.24 0.57 7.98 16 20 O -0.55 -12.17 16.14 21.98 0.35 -11.82 16 21 O -0.51 -5.64 13.42 -51.38 -0.69 -6.33 16 22 C -0.13 -2.60 5.55 -19.63 -0.11 -2.71 16 23 C -0.06 -0.88 10.04 22.25 0.22 -0.65 16 24 C -0.14 -1.97 10.06 22.28 0.22 -1.74 16 25 C -0.09 -1.75 10.02 22.19 0.22 -1.52 16 26 C -0.18 -5.11 9.37 22.52 0.21 -4.90 16 27 C 0.14 3.85 6.59 38.34 0.25 4.11 16 28 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.14 5.14 8.14 -2.39 -0.02 5.12 16 32 H 0.14 5.10 8.14 -2.39 -0.02 5.08 16 33 H 0.08 2.04 7.52 -2.39 -0.02 2.02 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 1.42 8.09 -2.39 -0.02 1.40 16 37 H 0.43 1.55 9.10 -74.06 -0.67 0.88 16 38 H 0.16 0.93 8.06 -2.92 -0.02 0.91 16 39 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.12 3.92 6.11 -2.91 -0.02 3.90 16 Total: -1.00 -82.41 362.14 0.24 -82.18 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.39 Total: 14.56 kcal Atomic # 6 Polarization: -53.15 SS G_CDS: 3.52 Total: -49.64 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -0.86 Total: -86.63 kcal Atomic # 8 Polarization: -103.20 SS G_CDS: -4.52 Total: -107.73 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 101.88 SS G_CDS: -0.31 Total: 101.56 kcal Total: -82.41 0.24 -82.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363260175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.631 kcal (2) G-P(sol) polarization free energy of solvation -82.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds