Wall clock time and date at job start Tue Mar 31 2020 22:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86792 * 120.00174 * 2 1 4 4 H 1.48506 * 109.47493 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47119 * 299.99731 * 3 2 1 6 6 H 1.48498 * 109.47140 * 59.99584 * 3 2 1 7 7 C 1.39947 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00390 * 197.87080 * 7 2 1 9 9 C 1.41399 * 120.00161 * 17.86862 * 7 2 1 10 10 C 1.40718 * 120.24220 * 24.38031 * 9 7 2 11 11 C 1.37612 * 119.74633 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24630 * 359.97438 * 11 10 9 13 13 S 1.76204 * 119.74942 * 180.02562 * 12 11 10 14 14 O 1.42108 * 106.39989 * 336.45794 * 13 12 11 15 15 O 1.42096 * 106.40305 * 203.53839 * 13 12 11 16 16 N 1.65605 * 107.21890 * 89.99610 * 13 12 11 17 17 C 1.47483 * 125.66508 * 269.69434 * 16 13 12 18 18 C 1.55036 * 104.90604 * 156.27074 * 17 16 13 19 19 C 1.54436 * 101.52149 * 36.29649 * 18 17 16 20 20 C 1.47199 * 125.66272 * 90.00394 * 16 13 12 21 21 O 1.42943 * 110.40669 * 84.17165 * 19 18 17 22 22 C 1.44987 * 104.55539 * 98.62236 * 21 19 18 23 23 C 1.54980 * 101.84204 * 35.27975 * 22 21 19 24 24 O 1.42536 * 110.63794 * 205.93602 * 19 18 17 25 25 C 1.38630 * 120.50469 * 0.29233 * 12 11 10 26 26 C 1.37623 * 120.24743 * 359.45023 * 25 12 11 27 27 H 0.97000 * 119.99805 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.12629 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87885 * 180.02562 * 11 10 9 30 30 H 1.09007 * 110.35591 * 275.12604 * 17 16 13 31 31 H 1.08999 * 110.35392 * 37.41631 * 17 16 13 32 32 H 1.09000 * 111.01628 * 278.24164 * 18 17 16 33 33 H 1.08997 * 111.04999 * 154.37090 * 18 17 16 34 34 H 1.09004 * 109.91295 * 300.64594 * 20 16 13 35 35 H 1.09005 * 109.91364 * 61.91334 * 20 16 13 36 36 H 1.08999 * 110.95159 * 277.14750 * 22 21 19 37 37 H 1.08997 * 110.95126 * 153.41557 * 22 21 19 38 38 H 1.09000 * 110.68877 * 206.50595 * 23 22 21 39 39 H 1.09005 * 110.68833 * 83.31804 * 23 22 21 40 40 H 1.08005 * 119.88171 * 179.70796 * 25 12 11 41 41 H 1.07998 * 120.13025 * 180.27838 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3964 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2345 0.2876 9 6 1.3522 -2.4072 -0.3747 10 6 0.2210 -2.3626 -1.2105 11 6 -0.4096 -3.5320 -1.5689 12 6 0.0658 -4.7508 -1.1100 13 16 -0.7514 -6.2402 -1.5776 14 8 -2.0843 -5.8784 -1.9125 15 8 -0.4343 -7.2019 -0.5807 16 7 -0.0442 -6.7684 -2.9788 17 6 -0.4719 -6.4132 -4.3448 18 6 0.7893 -6.6170 -5.2232 19 6 1.4310 -7.8549 -4.5592 20 6 1.1118 -7.6754 -3.0677 21 8 0.8421 -9.0543 -5.0669 22 6 1.7730 -9.5181 -6.0770 23 6 3.1371 -9.1154 -5.4612 24 8 2.8380 -7.8741 -4.7862 25 6 1.1760 -4.8063 -0.2817 26 6 1.8257 -3.6499 0.0852 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1507 -1.4142 -1.5694 29 1 -1.2777 -3.5003 -2.2106 30 1 -1.2742 -7.0733 -4.6746 31 1 -0.7959 -5.3732 -4.3823 32 1 1.4517 -5.7535 -5.1625 33 1 0.5164 -6.8257 -6.2576 34 1 1.9680 -7.2370 -2.5550 35 1 0.8628 -8.6388 -2.6227 36 1 1.6069 -9.0060 -7.0247 37 1 1.7057 -10.5988 -6.2023 38 1 3.8812 -8.9596 -6.2422 39 1 3.4758 -9.8687 -4.7498 40 1 1.5350 -5.7609 0.0737 41 1 2.6931 -3.6957 0.7270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396507162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:05 Heat of formation + Delta-G solvation = -157.697763 kcal Electronic energy + Delta-G solvation = -27708.852395 eV Core-core repulsion = 23679.731346 eV Total energy + Delta-G solvation = -4029.121048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85925 -39.40125 -38.26565 -38.21881 -36.86698 -36.13492 -35.82543 -32.09407 -31.73896 -31.32095 -30.64098 -28.42228 -27.63896 -24.45601 -23.56241 -23.25671 -22.94857 -22.13259 -20.11755 -19.44918 -18.91030 -18.58636 -18.17024 -17.48706 -17.21800 -16.71659 -16.39901 -15.89724 -15.79323 -15.60617 -15.31765 -15.02444 -14.79786 -14.72937 -14.14201 -14.02567 -13.90833 -13.76916 -13.57132 -13.52182 -13.26451 -13.16220 -13.08074 -12.98643 -12.89559 -12.68488 -12.59374 -12.52130 -12.20305 -12.00374 -11.57408 -11.40431 -11.22708 -11.15936 -10.65241 -10.06180 -9.79463 -9.57590 -8.88663 -6.66580 -0.48765 0.45937 1.03683 1.35807 1.41455 1.53624 2.05589 2.12060 2.44815 2.50765 2.77800 2.89134 3.20131 3.39361 3.52643 3.65334 3.73420 4.09672 4.12838 4.20849 4.27818 4.29306 4.36803 4.45831 4.47736 4.66042 4.67947 4.78462 4.81095 4.85035 4.91739 4.96066 5.01222 5.04131 5.06435 5.21714 5.36043 5.51160 5.57448 5.75150 5.91597 6.11392 6.13181 6.46978 6.66401 6.79019 8.06774 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003241 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.699281 B = 8637.323119 C = 9405.084517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.033 3.967 3 Si 0.994 3.006 4 H -0.252 1.252 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.093 0.907 9 C 0.112 3.888 10 C -0.206 4.206 11 C -0.020 4.020 12 C -0.797 4.797 13 S 2.737 3.263 14 O -0.994 6.994 15 O -0.996 6.996 16 N -1.012 6.012 17 C 0.117 3.883 18 C -0.141 4.141 19 C 0.256 3.744 20 C 0.112 3.888 21 O -0.376 6.376 22 C 0.010 3.990 23 C 0.009 3.991 24 O -0.383 6.383 25 C -0.003 4.003 26 C -0.255 4.255 27 H 0.299 0.701 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.561 -11.691 -14.222 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.175 1.175 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.111 0.889 9 C 0.108 3.892 10 C -0.226 4.226 11 C -0.040 4.040 12 C -0.891 4.891 13 S 2.835 3.165 14 O -0.984 6.984 15 O -0.987 6.987 16 N -0.851 5.851 17 C -0.008 4.008 18 C -0.180 4.180 19 C 0.176 3.824 20 C -0.014 4.014 21 O -0.297 6.297 22 C -0.066 4.066 23 C -0.066 4.066 24 O -0.304 6.304 25 C -0.023 4.023 26 C -0.276 4.276 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.103 0.897 40 H 0.141 0.859 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.532 -11.922 -13.580 18.630 hybrid contribution 0.585 1.262 0.306 1.424 sum 5.116 -10.660 -13.275 17.777 Atomic orbital electron populations 1.69867 1.09501 1.31915 1.30720 1.27069 0.95562 1.05361 0.90641 0.84969 0.79490 0.74910 0.79312 1.17542 1.18428 1.18758 1.20273 0.99013 0.92043 1.37629 0.88883 1.18213 0.90685 0.93275 0.87027 1.21360 1.00705 0.97080 1.03454 1.20441 0.96110 0.91800 0.95620 1.29623 1.18372 1.16447 1.24673 0.99965 0.72436 0.72964 0.71094 1.93457 1.35566 1.85139 1.84281 1.93443 1.85588 1.61511 1.58129 1.58528 1.45169 1.60740 1.20647 1.22165 0.97479 1.01728 0.79398 1.23298 0.96471 0.97716 1.00560 1.23437 0.79421 0.87233 0.92283 1.21841 0.88728 0.94290 0.96513 1.89234 1.45597 1.39788 1.55050 1.24780 0.85872 1.03678 0.92221 1.24608 0.98854 0.85515 0.97631 1.88895 1.21466 1.40528 1.79501 1.20434 0.91761 0.97962 0.92114 1.21253 1.05001 0.92854 1.08454 0.88971 0.86943 0.86653 0.89882 0.89864 0.88930 0.86543 0.89706 0.89891 0.88730 0.84811 0.85449 0.89685 0.85947 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.09 10.95 21.83 0.24 -38.85 16 2 C 0.03 1.54 5.14 85.26 0.44 1.98 16 3 Si 0.99 34.58 29.59 68.60 2.03 36.61 16 4 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 5 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 6 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 7 C -0.46 -23.31 9.05 23.46 0.21 -23.10 16 8 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 9 C 0.11 5.88 5.58 -21.29 -0.12 5.76 16 10 C -0.21 -10.73 8.70 22.73 0.20 -10.53 16 11 C -0.02 -0.95 9.49 22.22 0.21 -0.74 16 12 C -0.80 -36.50 6.00 22.46 0.13 -36.36 16 13 S 2.74 111.16 5.94 -56.49 -0.34 110.82 16 14 O -0.99 -43.93 16.84 -128.00 -2.16 -46.09 16 15 O -1.00 -43.78 16.84 -128.00 -2.16 -45.93 16 16 N -1.01 -33.16 3.71 -506.97 -1.88 -35.03 16 17 C 0.12 3.13 6.99 86.89 0.61 3.74 16 18 C -0.14 -3.11 6.51 31.78 0.21 -2.90 16 19 C 0.26 6.10 1.27 31.28 0.04 6.14 16 20 C 0.11 3.29 6.56 86.44 0.57 3.86 16 21 O -0.38 -8.05 11.05 -126.23 -1.40 -9.44 16 22 C 0.01 0.12 7.96 72.66 0.58 0.69 16 23 C 0.01 0.12 8.08 72.66 0.59 0.71 16 24 O -0.38 -8.62 10.94 -126.23 -1.38 -10.00 16 25 C 0.00 -0.13 9.49 22.22 0.21 0.08 16 26 C -0.26 -12.51 9.80 22.73 0.22 -12.29 16 27 H 0.30 12.97 8.30 -92.71 -0.77 12.20 16 28 H 0.11 5.96 6.16 -2.91 -0.02 5.94 16 29 H 0.12 5.10 7.60 -2.91 -0.02 5.08 16 30 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.53 8.06 -2.39 -0.02 2.51 16 35 H 0.08 2.40 8.06 -2.38 -0.02 2.38 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.12 5.07 7.59 -2.91 -0.02 5.04 16 41 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -68.55 354.65 -1.89 -70.43 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 1.05 Total: 30.44 kcal Atomic # 6 Polarization: -67.05 SS G_CDS: 4.09 Total: -62.96 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.64 Total: -73.88 kcal Atomic # 8 Polarization: -104.38 SS G_CDS: -7.09 Total: -111.47 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Atomic # 16 Polarization: 111.16 SS G_CDS: -0.34 Total: 110.82 kcal Total: -68.55 -1.89 -70.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396507162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.264 kcal (2) G-P(sol) polarization free energy of solvation -68.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds