Wall clock time and date at job start Tue Mar 31 2020 22:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99614 * 3 2 1 6 6 H 1.48490 * 109.47155 * 59.99256 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00011 * 197.72795 * 7 2 1 9 9 C 1.41400 * 119.99509 * 17.72383 * 7 2 1 10 10 C 1.40707 * 120.24843 * 24.53120 * 9 7 2 11 11 C 1.37623 * 119.74849 * 180.22492 * 10 9 7 12 12 C 1.38630 * 120.24117 * 359.52215 * 11 10 9 13 13 S 1.76208 * 119.74372 * 180.27329 * 12 11 10 14 14 O 1.42106 * 106.39953 * 203.53775 * 13 12 11 15 15 O 1.42094 * 106.40475 * 336.45981 * 13 12 11 16 16 N 1.65595 * 107.21711 * 90.00149 * 13 12 11 17 17 C 1.46506 * 120.00108 * 64.99631 * 16 13 12 18 18 H 1.09003 * 109.47001 * 335.00257 * 17 16 13 19 19 C 1.50702 * 109.46753 * 95.00098 * 17 16 13 20 20 O 1.20819 * 120.00260 * 0.02562 * 19 17 16 21 21 O 1.34229 * 119.99816 * 180.02562 * 19 17 16 22 22 C 1.52999 * 109.47170 * 214.99618 * 17 16 13 23 23 C 1.53777 * 113.61878 * 277.50137 * 22 17 16 24 24 C 1.53781 * 87.07872 * 220.02023 * 23 22 17 25 25 C 1.53771 * 87.08372 * 25.43126 * 24 23 22 26 26 C 1.38629 * 120.50679 * 0.25281 * 12 11 10 27 27 C 1.37618 * 120.24753 * 359.97438 * 26 12 11 28 28 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12916 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87639 * 179.79220 * 11 10 9 31 31 H 0.97003 * 120.00171 * 244.99995 * 16 13 12 32 32 H 0.96705 * 116.99837 * 180.02562 * 21 19 17 33 33 H 1.09008 * 112.84453 * 48.81303 * 22 17 16 34 34 H 1.09002 * 113.61102 * 334.56780 * 23 22 17 35 35 H 1.08992 * 113.61393 * 105.47135 * 23 22 17 36 36 H 1.09004 * 113.61098 * 270.88148 * 24 23 22 37 37 H 1.09003 * 113.69068 * 139.99700 * 24 23 22 38 38 H 1.09001 * 113.61695 * 220.02025 * 25 24 23 39 39 H 1.09006 * 113.61888 * 89.11728 * 25 24 23 40 40 H 1.08002 * 119.88011 * 179.97438 * 26 12 11 41 41 H 1.08002 * 120.12831 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2853 9 6 1.3512 -2.4076 -0.3717 10 6 0.2202 -2.3643 -1.2076 11 6 -0.4139 -3.5339 -1.5598 12 6 0.0638 -4.7522 -1.1021 13 16 -0.7539 -6.2422 -1.5670 14 8 -0.4331 -7.2035 -0.5708 15 8 -2.0879 -5.8815 -1.8980 16 7 -0.0504 -6.7702 -2.9700 17 6 1.3531 -7.1903 -2.9728 18 1 1.8810 -6.6990 -2.1554 19 6 1.4305 -8.6847 -2.7946 20 8 0.4173 -9.3325 -2.6778 21 8 2.6251 -9.2962 -2.7657 22 6 1.9992 -6.8013 -4.3040 23 6 1.7296 -7.8060 -5.4365 24 6 3.1902 -7.5921 -5.8676 25 6 3.4807 -7.1998 -4.4094 26 6 1.1801 -4.8072 -0.2819 27 6 1.8272 -3.6499 0.0867 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1510 -1.4166 -1.5689 30 1 -1.2842 -3.5028 -2.1985 31 1 -0.5676 -6.8014 -3.7901 32 1 2.6241 -10.2562 -2.6497 33 1 1.8049 -5.7653 -4.5820 34 1 1.5220 -8.8162 -5.0837 35 1 1.0025 -7.4543 -6.1683 36 1 3.3212 -6.7728 -6.5746 37 1 3.6925 -8.5069 -6.1821 38 1 4.1671 -6.3587 -4.3119 39 1 3.7519 -8.0443 -3.7757 40 1 1.5433 -5.7618 0.0691 41 1 2.6969 -3.6951 0.7254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399262103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:35 Heat of formation + Delta-G solvation = -133.421312 kcal Electronic energy + Delta-G solvation = -27832.617771 eV Core-core repulsion = 23804.549429 eV Total energy + Delta-G solvation = -4028.068343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84200 -38.45981 -37.63214 -36.55813 -36.21547 -35.13959 -34.47296 -34.08093 -30.31195 -29.53419 -28.48035 -25.88002 -25.74468 -24.35757 -21.70174 -21.54892 -21.19055 -19.48816 -19.04342 -18.06625 -17.70208 -17.40926 -17.01672 -16.20762 -16.14697 -15.69132 -15.44690 -15.18034 -14.50236 -14.20984 -14.09631 -13.48887 -13.33144 -13.22089 -12.67819 -12.49638 -12.35033 -12.24031 -12.03482 -11.79233 -11.67524 -11.50734 -11.47626 -11.39914 -11.34192 -11.24202 -10.95547 -10.90404 -10.62940 -10.48563 -10.43106 -10.30483 -9.84723 -9.73293 -9.54952 -9.28026 -8.01865 -7.76473 -7.18618 -4.85072 1.12771 2.19570 2.24368 2.83256 2.85790 2.88496 2.92399 2.94435 3.57972 3.63325 4.18122 4.35479 4.40785 4.53795 4.58771 4.71727 4.96871 5.09189 5.13934 5.21287 5.33164 5.55821 5.64370 5.70021 5.74764 5.88849 5.94653 5.99258 6.06965 6.09024 6.41733 6.48453 6.63552 6.65971 6.85591 6.98473 7.12228 7.28791 7.36864 7.58367 7.72073 7.91282 7.91638 8.27212 8.46300 8.59734 9.72736 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.003572 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.093515 B = 7837.080451 C = 8779.120469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.433 4.433 8 H 0.089 0.911 9 C 0.139 3.861 10 C -0.183 4.183 11 C -0.013 4.013 12 C -0.790 4.790 13 S 2.688 3.312 14 O -0.977 6.977 15 O -0.977 6.977 16 N -1.102 6.102 17 C 0.181 3.819 18 H 0.126 0.874 19 C 0.467 3.533 20 O -0.498 6.498 21 O -0.513 6.513 22 C -0.112 4.112 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.004 4.004 27 C -0.235 4.235 28 H 0.290 0.710 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.416 0.584 32 H 0.403 0.597 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 -8.632 -9.701 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.107 0.893 9 C 0.136 3.864 10 C -0.203 4.203 11 C -0.033 4.033 12 C -0.886 4.886 13 S 2.787 3.213 14 O -0.967 6.967 15 O -0.968 6.968 16 N -0.856 5.856 17 C 0.070 3.930 18 H 0.144 0.856 19 C 0.306 3.694 20 O -0.384 6.384 21 O -0.325 6.325 22 C -0.132 4.132 23 C -0.180 4.180 24 C -0.175 4.175 25 C -0.181 4.181 26 C -0.024 4.024 27 C -0.256 4.256 28 H 0.101 0.899 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.250 0.750 32 H 0.262 0.738 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.104 -8.709 -9.104 14.000 hybrid contribution 0.396 0.682 -0.170 0.807 sum 6.500 -8.027 -9.274 13.881 Atomic orbital electron populations 1.69830 1.07956 1.30418 1.30244 1.26160 0.94888 1.02212 0.91848 0.86101 0.81001 0.79838 0.79062 1.17939 1.19209 1.19493 1.19996 0.98516 0.91166 1.36315 0.89320 1.17859 0.90092 0.92141 0.86349 1.21344 0.99747 0.96909 1.02320 1.20247 0.95871 0.91686 0.95492 1.29104 1.18508 1.15302 1.25680 1.01502 0.73285 0.74349 0.72120 1.93505 1.84975 1.61013 1.57227 1.93503 1.34567 1.84927 1.83772 1.55754 1.19146 1.81012 1.29680 1.20154 0.83839 0.86895 1.02103 0.85604 1.24107 0.80888 0.92333 0.72039 1.90714 1.36590 1.66686 1.44395 1.84571 1.34512 1.28456 1.84989 1.22904 0.96980 1.01365 0.91921 1.23050 0.97815 0.98917 0.98217 1.22741 0.96076 1.01631 0.97015 1.23245 0.94790 1.02891 0.97174 1.20167 0.92036 0.97433 0.92742 1.21021 1.04147 0.92720 1.07681 0.89904 0.85965 0.87796 0.75038 0.73789 0.86425 0.90495 0.90920 0.90096 0.91421 0.90773 0.87316 0.87914 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.90 10.95 55.55 0.61 -17.29 16 2 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 3 Si 0.92 16.51 29.59 -169.99 -5.03 11.48 16 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 5 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 6 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 7 C -0.43 -10.26 9.06 -37.74 -0.34 -10.61 16 8 H 0.09 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.14 3.41 5.57 -106.83 -0.60 2.81 16 10 C -0.18 -4.43 8.70 -38.87 -0.34 -4.77 16 11 C -0.01 -0.28 9.49 -39.66 -0.38 -0.66 16 12 C -0.79 -16.90 5.84 -39.29 -0.23 -17.13 16 13 S 2.69 52.90 5.64 -107.50 -0.61 52.29 16 14 O -0.98 -21.53 17.02 -57.17 -0.97 -22.50 16 15 O -0.98 -21.51 17.26 -57.17 -0.99 -22.49 16 16 N -1.10 -16.70 4.96 -5.88 -0.03 -16.73 16 17 C 0.18 2.43 2.85 -69.08 -0.20 2.23 16 18 H 0.13 1.71 7.21 -51.93 -0.37 1.33 16 19 C 0.47 6.41 5.62 36.01 0.20 6.61 16 20 O -0.50 -8.51 17.19 -18.74 -0.32 -8.83 16 21 O -0.51 -5.03 10.51 -39.25 -0.41 -5.44 16 22 C -0.11 -1.18 3.83 -89.81 -0.34 -1.52 16 23 C -0.14 -1.34 7.37 -25.92 -0.19 -1.53 16 24 C -0.14 -1.11 8.08 -25.92 -0.21 -1.32 16 25 C -0.14 -1.31 7.41 -25.92 -0.19 -1.51 16 26 C 0.00 -0.08 8.86 -39.66 -0.35 -0.43 16 27 C -0.24 -5.32 9.80 -38.87 -0.38 -5.70 16 28 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 29 H 0.12 3.00 6.16 -52.49 -0.32 2.68 16 30 H 0.10 2.18 7.60 -52.49 -0.40 1.78 16 31 H 0.42 5.37 8.84 -34.47 -0.30 5.06 16 32 H 0.40 2.35 9.10 45.56 0.41 2.76 16 33 H 0.12 1.21 8.14 -51.92 -0.42 0.78 16 34 H 0.08 0.78 6.38 -51.93 -0.33 0.45 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.11 1.00 5.22 -51.93 -0.27 0.73 16 40 H 0.10 1.97 7.60 -52.49 -0.40 1.57 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -32.14 355.14 -10.11 -42.24 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -4.07 Total: 13.92 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -3.63 Total: -32.01 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.58 Total: -34.01 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -2.69 Total: -59.27 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Atomic # 16 Polarization: 52.90 SS G_CDS: -0.61 Total: 52.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.14 -10.11 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399262103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.176 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds