Wall clock time and date at job start Tue Mar 31 2020 22:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99614 * 3 2 1 6 6 H 1.48490 * 109.47155 * 59.99256 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00011 * 197.72795 * 7 2 1 9 9 C 1.41400 * 119.99509 * 17.72383 * 7 2 1 10 10 C 1.40707 * 120.24843 * 24.53120 * 9 7 2 11 11 C 1.37623 * 119.74849 * 180.22492 * 10 9 7 12 12 C 1.38630 * 120.24117 * 359.52215 * 11 10 9 13 13 S 1.76208 * 119.74372 * 180.27329 * 12 11 10 14 14 O 1.42106 * 106.39953 * 203.53775 * 13 12 11 15 15 O 1.42094 * 106.40475 * 336.45981 * 13 12 11 16 16 N 1.65595 * 107.21711 * 90.00149 * 13 12 11 17 17 C 1.46506 * 120.00108 * 64.99631 * 16 13 12 18 18 H 1.09003 * 109.47001 * 335.00257 * 17 16 13 19 19 C 1.50702 * 109.46753 * 95.00098 * 17 16 13 20 20 O 1.20819 * 120.00260 * 0.02562 * 19 17 16 21 21 O 1.34229 * 119.99816 * 180.02562 * 19 17 16 22 22 C 1.52999 * 109.47170 * 214.99618 * 17 16 13 23 23 C 1.53777 * 113.61878 * 277.50137 * 22 17 16 24 24 C 1.53781 * 87.07872 * 220.02023 * 23 22 17 25 25 C 1.53771 * 87.08372 * 25.43126 * 24 23 22 26 26 C 1.38629 * 120.50679 * 0.25281 * 12 11 10 27 27 C 1.37618 * 120.24753 * 359.97438 * 26 12 11 28 28 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12916 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87639 * 179.79220 * 11 10 9 31 31 H 0.97003 * 120.00171 * 244.99995 * 16 13 12 32 32 H 0.96705 * 116.99837 * 180.02562 * 21 19 17 33 33 H 1.09008 * 112.84453 * 48.81303 * 22 17 16 34 34 H 1.09002 * 113.61102 * 334.56780 * 23 22 17 35 35 H 1.08992 * 113.61393 * 105.47135 * 23 22 17 36 36 H 1.09004 * 113.61098 * 270.88148 * 24 23 22 37 37 H 1.09003 * 113.69068 * 139.99700 * 24 23 22 38 38 H 1.09001 * 113.61695 * 220.02025 * 25 24 23 39 39 H 1.09006 * 113.61888 * 89.11728 * 25 24 23 40 40 H 1.08002 * 119.88011 * 179.97438 * 26 12 11 41 41 H 1.08002 * 120.12831 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2853 9 6 1.3512 -2.4076 -0.3717 10 6 0.2202 -2.3643 -1.2076 11 6 -0.4139 -3.5339 -1.5598 12 6 0.0638 -4.7522 -1.1021 13 16 -0.7539 -6.2422 -1.5670 14 8 -0.4331 -7.2035 -0.5708 15 8 -2.0879 -5.8815 -1.8980 16 7 -0.0504 -6.7702 -2.9700 17 6 1.3531 -7.1903 -2.9728 18 1 1.8810 -6.6990 -2.1554 19 6 1.4305 -8.6847 -2.7946 20 8 0.4173 -9.3325 -2.6778 21 8 2.6251 -9.2962 -2.7657 22 6 1.9992 -6.8013 -4.3040 23 6 1.7296 -7.8060 -5.4365 24 6 3.1902 -7.5921 -5.8676 25 6 3.4807 -7.1998 -4.4094 26 6 1.1801 -4.8072 -0.2819 27 6 1.8272 -3.6499 0.0867 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1510 -1.4166 -1.5689 30 1 -1.2842 -3.5028 -2.1985 31 1 -0.5676 -6.8014 -3.7901 32 1 2.6241 -10.2562 -2.6497 33 1 1.8049 -5.7653 -4.5820 34 1 1.5220 -8.8162 -5.0837 35 1 1.0025 -7.4543 -6.1683 36 1 3.3212 -6.7728 -6.5746 37 1 3.6925 -8.5069 -6.1821 38 1 4.1671 -6.3587 -4.3119 39 1 3.7519 -8.0443 -3.7757 40 1 1.5433 -5.7618 0.0691 41 1 2.6969 -3.6951 0.7254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399262103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:34 Heat of formation + Delta-G solvation = -155.666180 kcal Electronic energy + Delta-G solvation = -27833.582381 eV Core-core repulsion = 23804.549429 eV Total energy + Delta-G solvation = -4029.032952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.83333 -39.40734 -39.30526 -38.21913 -37.25046 -36.84285 -35.83136 -35.60121 -32.07554 -31.30367 -29.55208 -27.63026 -26.47666 -25.22966 -23.30674 -23.02395 -22.59775 -20.55408 -20.25981 -19.43783 -19.09440 -18.84525 -18.48419 -17.60589 -17.19646 -17.08946 -16.82710 -16.10238 -15.95537 -15.77611 -15.18952 -15.02231 -14.95705 -14.33985 -14.12850 -13.97120 -13.58159 -13.53547 -13.20948 -13.13694 -13.11863 -13.07905 -12.97769 -12.87721 -12.65807 -12.57299 -12.49213 -12.15428 -11.94072 -11.55993 -11.46479 -11.32623 -11.22004 -11.18078 -11.09932 -10.63775 -9.79948 -9.55291 -8.87112 -6.64630 -0.44781 0.46623 1.06056 1.17987 1.37904 1.43020 1.55340 1.90196 2.12635 2.22816 2.51505 2.89176 3.48461 3.49005 3.55216 3.61364 3.81657 3.98413 4.03999 4.14904 4.30592 4.32258 4.35331 4.65895 4.85222 4.88949 4.92543 4.95372 5.04402 5.10761 5.13723 5.23241 5.25011 5.33098 5.52739 5.59321 5.60541 5.70065 5.76328 5.92666 5.98661 6.15296 6.49783 6.68790 6.81243 6.99645 8.07980 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.003572 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.093515 B = 7837.080451 C = 8779.120469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.250 1.250 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.096 0.904 9 C 0.113 3.887 10 C -0.205 4.205 11 C -0.018 4.018 12 C -0.794 4.794 13 S 2.716 3.284 14 O -0.999 6.999 15 O -1.002 7.002 16 N -1.090 6.090 17 C 0.169 3.831 18 H 0.125 0.875 19 C 0.474 3.526 20 O -0.537 6.537 21 O -0.498 6.498 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.127 4.127 25 C -0.142 4.142 26 C -0.004 4.004 27 C -0.249 4.249 28 H 0.298 0.702 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.428 0.572 32 H 0.424 0.576 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.892 -8.877 -10.665 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.186 1.186 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.114 0.886 9 C 0.109 3.891 10 C -0.225 4.225 11 C -0.038 4.038 12 C -0.888 4.888 13 S 2.814 3.186 14 O -0.989 6.989 15 O -0.993 6.993 16 N -0.848 5.848 17 C 0.059 3.941 18 H 0.142 0.858 19 C 0.315 3.685 20 O -0.426 6.426 21 O -0.311 6.311 22 C -0.134 4.134 23 C -0.180 4.180 24 C -0.165 4.165 25 C -0.180 4.180 26 C -0.023 4.023 27 C -0.269 4.269 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.264 0.736 32 H 0.286 0.714 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.143 0.857 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.777 -8.965 -10.066 15.562 hybrid contribution -0.099 0.607 0.101 0.624 sum 7.678 -8.358 -9.965 15.103 Atomic orbital electron populations 1.69869 1.09527 1.31880 1.30765 1.27045 0.95497 1.05344 0.90668 0.84998 0.79644 0.75079 0.79181 1.17332 1.18594 1.18996 1.20301 0.99040 0.91954 1.37404 0.88647 1.18202 0.90588 0.93343 0.86933 1.21349 1.00723 0.96996 1.03468 1.20420 0.96048 0.91805 0.95524 1.29399 1.18222 1.15814 1.25390 1.00559 0.72390 0.73346 0.72345 1.93475 1.85196 1.61227 1.58986 1.93463 1.36295 1.85187 1.84313 1.55240 1.20306 1.80560 1.28728 1.20473 0.82539 0.87182 1.03895 0.85770 1.24020 0.81150 0.92313 0.71056 1.90709 1.37987 1.67479 1.46441 1.84515 1.32281 1.30257 1.84059 1.22998 0.97921 1.01872 0.90616 1.23060 0.99074 0.98081 0.97832 1.22717 0.94871 1.02450 0.96426 1.23272 0.93614 1.03063 0.98017 1.20430 0.91721 0.98048 0.92135 1.21250 1.04952 0.92610 1.08132 0.89038 0.87132 0.86824 0.73567 0.71411 0.86151 0.91194 0.90240 0.89180 0.90317 0.90356 0.87262 0.85740 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.07 10.95 21.83 0.24 -37.83 16 2 C 0.03 1.53 5.14 85.26 0.44 1.97 16 3 Si 0.99 33.37 29.59 68.60 2.03 35.40 16 4 H -0.25 -8.10 7.11 99.48 0.71 -7.39 16 5 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 6 H -0.27 -8.67 7.11 99.48 0.71 -7.96 16 7 C -0.46 -22.09 9.06 23.46 0.21 -21.88 16 8 H 0.10 4.27 7.91 -2.91 -0.02 4.25 16 9 C 0.11 5.62 5.57 -21.29 -0.12 5.51 16 10 C -0.21 -10.21 8.70 22.73 0.20 -10.01 16 11 C -0.02 -0.82 9.49 22.22 0.21 -0.61 16 12 C -0.79 -33.91 5.84 22.46 0.13 -33.78 16 13 S 2.72 105.76 5.64 -56.49 -0.32 105.44 16 14 O -1.00 -43.43 17.02 -128.00 -2.18 -45.60 16 15 O -1.00 -43.94 17.26 -128.00 -2.21 -46.15 16 16 N -1.09 -32.07 4.96 -172.51 -0.86 -32.93 16 17 C 0.17 4.31 2.85 44.24 0.13 4.44 16 18 H 0.12 3.22 7.21 -2.39 -0.02 3.20 16 19 C 0.47 12.27 5.62 71.24 0.40 12.67 16 20 O -0.54 -17.82 17.19 21.98 0.38 -17.45 16 21 O -0.50 -8.60 10.51 -51.40 -0.54 -9.14 16 22 C -0.11 -2.20 3.83 -10.27 -0.04 -2.24 16 23 C -0.14 -2.37 7.37 31.12 0.23 -2.14 16 24 C -0.13 -1.71 8.08 31.12 0.25 -1.46 16 25 C -0.14 -2.26 7.41 31.12 0.23 -2.03 16 26 C 0.00 -0.15 8.86 22.22 0.20 0.05 16 27 C -0.25 -11.31 9.80 22.73 0.22 -11.09 16 28 H 0.30 12.66 8.30 -92.70 -0.77 11.89 16 29 H 0.11 5.66 6.16 -2.91 -0.02 5.64 16 30 H 0.11 4.85 7.60 -2.91 -0.02 4.83 16 31 H 0.43 10.62 8.84 -96.74 -0.85 9.77 16 32 H 0.42 3.85 9.10 -74.05 -0.67 3.17 16 33 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.07 1.28 6.38 -2.39 -0.02 1.26 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.73 5.22 -2.38 -0.01 1.71 16 40 H 0.12 4.64 7.60 -2.91 -0.02 4.62 16 41 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -69.17 355.14 -1.19 -70.36 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.43 Total: 38.50 kcal Atomic # 6 Polarization: -63.29 SS G_CDS: 2.69 Total: -60.60 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -0.62 Total: -70.76 kcal Atomic # 8 Polarization: -113.79 SS G_CDS: -4.55 Total: -118.34 kcal Atomic # 14 Polarization: 33.37 SS G_CDS: 2.03 Total: 35.40 kcal Atomic # 16 Polarization: 105.76 SS G_CDS: -0.32 Total: 105.44 kcal Total: -69.17 -1.19 -70.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399262103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.305 kcal (2) G-P(sol) polarization free energy of solvation -69.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds