Wall clock time and date at job start Tue Mar 31 2020 22:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00277 * 2 1 4 4 H 1.48496 * 109.47448 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47092 * 300.00142 * 3 2 1 6 6 H 1.48504 * 109.47025 * 59.99634 * 3 2 1 7 7 C 1.39943 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99991 * 197.86407 * 7 2 1 9 9 C 1.41398 * 120.00169 * 17.86816 * 7 2 1 10 10 C 1.40715 * 120.24387 * 24.38170 * 9 7 2 11 11 C 1.37615 * 119.74582 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24892 * 0.02562 * 11 10 9 13 13 S 1.76202 * 119.74966 * 179.97438 * 12 11 10 14 14 O 1.42102 * 106.40123 * 336.46150 * 13 12 11 15 15 O 1.42102 * 106.40225 * 203.54004 * 13 12 11 16 16 N 1.65596 * 107.21737 * 89.99810 * 13 12 11 17 17 C 1.46504 * 120.00083 * 65.00110 * 16 13 12 18 18 H 1.09004 * 109.47033 * 24.99615 * 17 16 13 19 19 C 1.50692 * 109.47074 * 265.00051 * 17 16 13 20 20 O 1.20824 * 120.00268 * 359.97438 * 19 17 16 21 21 O 1.34233 * 120.00258 * 180.02562 * 19 17 16 22 22 C 1.53003 * 109.47415 * 144.99532 * 17 16 13 23 23 C 1.53776 * 113.61336 * 279.14096 * 22 17 16 24 24 C 1.53957 * 87.01709 * 220.04406 * 23 22 17 25 25 C 1.53777 * 113.61635 * 181.52890 * 22 17 16 26 26 C 1.38634 * 120.50064 * 0.25638 * 12 11 10 27 27 C 1.37623 * 120.24819 * 359.44220 * 26 12 11 28 28 H 0.96996 * 119.99295 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.12815 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.87606 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00481 * 244.71896 * 16 13 12 32 32 H 0.96697 * 117.00731 * 179.97438 * 21 19 17 33 33 H 1.08998 * 112.84346 * 50.33260 * 22 17 16 34 34 H 1.08995 * 113.61605 * 334.56490 * 23 22 17 35 35 H 1.09000 * 113.61741 * 105.47356 * 23 22 17 36 36 H 1.08996 * 113.53964 * 270.81160 * 24 23 22 37 37 H 1.09001 * 113.74402 * 139.94386 * 24 23 22 38 38 H 1.08996 * 113.61267 * 254.53481 * 25 22 17 39 39 H 1.09005 * 113.61222 * 25.43347 * 25 22 17 40 40 H 1.07997 * 119.87568 * 179.70425 * 26 12 11 41 41 H 1.08001 * 120.13248 * 180.27590 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3521 -2.4071 -0.3746 10 6 0.2210 -2.3626 -1.2105 11 6 -0.4097 -3.5320 -1.5688 12 6 0.0651 -4.7508 -1.1091 13 16 -0.7530 -6.2400 -1.5756 14 8 -2.0856 -5.8777 -1.9108 15 8 -0.4364 -7.2011 -0.5779 16 7 -0.0461 -6.7696 -2.9762 17 6 1.3569 -7.1914 -2.9747 18 1 1.6384 -7.5133 -1.9720 19 6 2.2291 -6.0365 -3.3948 20 8 1.7300 -4.9706 -3.6680 21 8 3.5605 -6.1922 -3.4665 22 6 1.5416 -8.3526 -3.9537 23 6 1.1251 -9.7161 -3.3776 24 6 2.3606 -10.3021 -4.0850 25 6 2.9791 -8.8967 -4.0000 26 6 1.1751 -4.8062 -0.2805 27 6 1.8253 -3.6498 0.0857 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1513 -1.4142 -1.5687 30 1 -1.2783 -3.5002 -2.2099 31 1 -0.5619 -6.8044 -3.7969 32 1 4.0783 -5.4232 -3.7411 33 1 1.1205 -8.1473 -4.9379 34 1 1.1799 -9.7659 -2.2902 35 1 0.1787 -10.0862 -3.7721 36 1 2.1630 -10.6312 -5.1051 37 1 2.8913 -11.0490 -3.4945 38 1 3.5273 -8.6060 -4.8961 39 1 3.5419 -8.7219 -3.0830 40 1 1.5335 -5.7607 0.0756 41 1 2.6926 -3.6956 0.7277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399262104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:38 Heat of formation + Delta-G solvation = -133.018613 kcal Electronic energy + Delta-G solvation = -28117.537752 eV Core-core repulsion = 24089.486872 eV Total energy + Delta-G solvation = -4028.050880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.40546 -38.63916 -37.51470 -36.55618 -35.99344 -35.19794 -34.40193 -33.99080 -30.20932 -29.42368 -28.51777 -25.80110 -25.71852 -24.20838 -21.48473 -21.30272 -21.10077 -19.94151 -18.79433 -17.89086 -17.58822 -17.22815 -16.68832 -16.65490 -16.12550 -15.47426 -15.42283 -15.00358 -14.51761 -14.14273 -14.02661 -13.37704 -13.22765 -13.15314 -12.51650 -12.43618 -12.26011 -12.18046 -12.06503 -11.73569 -11.69640 -11.50679 -11.41726 -11.34681 -11.25044 -11.15705 -10.84294 -10.79645 -10.69077 -10.57374 -10.43095 -10.34663 -9.74491 -9.63946 -9.44605 -9.18792 -7.89544 -7.63413 -7.09557 -4.74994 1.15490 2.30366 2.45811 2.88803 2.91816 2.97029 2.99556 3.06270 3.61159 3.69492 4.25949 4.40801 4.43004 4.50745 4.53362 4.74418 4.93618 5.06147 5.09746 5.43020 5.46496 5.53979 5.60272 5.69241 5.79476 5.82395 5.90004 6.04128 6.08897 6.18602 6.32454 6.71909 6.73683 6.74380 6.93984 7.08835 7.13718 7.39008 7.47119 7.69643 7.82006 8.01674 8.13810 8.37826 8.56442 8.71197 9.82141 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.003714 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.727567 B = 7536.467739 C = 8474.982245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.438 4.438 8 H 0.086 0.914 9 C 0.143 3.857 10 C -0.180 4.180 11 C 0.000 4.000 12 C -0.776 4.776 13 S 2.687 3.313 14 O -0.977 6.977 15 O -0.982 6.982 16 N -1.102 6.102 17 C 0.181 3.819 18 H 0.126 0.874 19 C 0.451 3.549 20 O -0.476 6.476 21 O -0.518 6.518 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.145 4.145 25 C -0.123 4.123 26 C -0.006 4.006 27 C -0.236 4.236 28 H 0.288 0.712 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.416 0.584 32 H 0.406 0.594 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 -12.399 -8.348 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.104 0.896 9 C 0.139 3.861 10 C -0.201 4.201 11 C -0.020 4.020 12 C -0.873 4.873 13 S 2.787 3.213 14 O -0.968 6.968 15 O -0.972 6.972 16 N -0.855 5.855 17 C 0.070 3.930 18 H 0.144 0.856 19 C 0.288 3.712 20 O -0.359 6.359 21 O -0.329 6.329 22 C -0.133 4.133 23 C -0.170 4.170 24 C -0.182 4.182 25 C -0.161 4.161 26 C -0.026 4.026 27 C -0.257 4.257 28 H 0.099 0.901 29 H 0.138 0.862 30 H 0.119 0.881 31 H 0.249 0.751 32 H 0.265 0.735 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.710 -12.741 -7.699 15.614 hybrid contribution 0.877 2.099 -0.576 2.346 sum 5.587 -10.643 -8.275 14.593 Atomic orbital electron populations 1.69840 1.07904 1.30207 1.30816 1.26131 0.94875 1.02087 0.91897 0.86123 0.80975 0.80006 0.78964 1.18044 1.19284 1.19549 1.19939 0.98471 0.91263 1.36824 0.89559 1.17823 0.90031 0.92027 0.86194 1.21281 0.99702 0.96868 1.02230 1.20143 0.95635 0.91671 0.94562 1.28947 1.18385 1.15201 1.24757 1.01460 0.73334 0.74477 0.72078 1.93509 1.34833 1.84759 1.83698 1.93489 1.85373 1.61403 1.56984 1.55758 1.17838 1.82433 1.29510 1.20208 0.80357 0.89814 1.02617 0.85603 1.24081 0.81527 0.90317 0.75244 1.90817 1.74568 1.27564 1.42996 1.84501 1.20310 1.46336 1.81797 1.22830 0.99184 0.92643 0.98655 1.23014 0.98410 0.94302 1.01259 1.22870 0.97520 0.96980 1.00853 1.22885 0.94740 0.95061 1.03416 1.20105 0.92236 0.97225 0.93017 1.20974 1.04041 0.92889 1.07763 0.90063 0.86161 0.88136 0.75082 0.73503 0.88187 0.89070 0.91038 0.90327 0.91137 0.91071 0.88897 0.88254 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.85 10.95 55.55 0.61 -18.24 16 2 C 0.07 1.71 5.14 -17.34 -0.09 1.62 16 3 Si 0.92 17.43 29.59 -169.99 -5.03 12.40 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 7 C -0.44 -10.98 9.05 -37.74 -0.34 -11.33 16 8 H 0.09 2.05 7.91 -52.48 -0.41 1.63 16 9 C 0.14 3.71 5.58 -106.82 -0.60 3.12 16 10 C -0.18 -4.70 8.70 -38.87 -0.34 -5.04 16 11 C 0.00 0.01 9.49 -39.66 -0.38 -0.37 16 12 C -0.78 -17.49 5.17 -39.29 -0.20 -17.70 16 13 S 2.69 52.09 5.71 -107.50 -0.61 51.47 16 14 O -0.98 -21.29 17.26 -57.17 -0.99 -22.28 16 15 O -0.98 -20.09 16.59 -57.17 -0.95 -21.04 16 16 N -1.10 -16.28 4.96 -5.88 -0.03 -16.31 16 17 C 0.18 2.37 2.63 -69.08 -0.18 2.19 16 18 H 0.13 1.65 7.34 -51.93 -0.38 1.27 16 19 C 0.45 6.57 7.67 36.00 0.28 6.84 16 20 O -0.48 -8.83 16.38 -18.75 -0.31 -9.14 16 21 O -0.52 -5.85 11.70 -39.27 -0.46 -6.31 16 22 C -0.11 -1.10 3.34 -89.81 -0.30 -1.40 16 23 C -0.13 -1.19 7.65 -25.83 -0.20 -1.39 16 24 C -0.14 -1.09 8.09 -25.83 -0.21 -1.29 16 25 C -0.12 -1.04 6.11 -25.92 -0.16 -1.20 16 26 C -0.01 -0.13 9.49 -39.66 -0.38 -0.50 16 27 C -0.24 -5.66 9.80 -38.87 -0.38 -6.04 16 28 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 29 H 0.12 3.19 6.15 -52.49 -0.32 2.87 16 30 H 0.10 2.32 7.60 -52.48 -0.40 1.92 16 31 H 0.42 5.17 8.83 -34.47 -0.30 4.87 16 32 H 0.41 3.38 9.10 45.56 0.41 3.79 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.88 7.99 -51.93 -0.41 0.47 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.81 7.83 -51.93 -0.41 0.41 16 40 H 0.10 1.98 7.59 -52.49 -0.40 1.58 16 41 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -32.60 359.78 -10.12 -42.72 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -4.30 Total: 13.80 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -3.47 Total: -32.49 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.58 Total: -34.55 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -2.70 Total: -58.76 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: 52.09 SS G_CDS: -0.61 Total: 51.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.60 -10.12 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399262104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.302 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds