Wall clock time and date at job start Tue Mar 31 2020 22:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48505 * 109.46774 * 239.99654 * 3 2 1 5 5 H 1.48502 * 109.47277 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47258 * 119.99648 * 3 2 1 7 7 C 1.37881 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07989 * 119.99933 * 172.57650 * 7 2 1 9 9 C 1.50697 * 119.99664 * 352.57636 * 7 2 1 10 10 C 1.53005 * 115.55208 * 84.73604 * 9 7 2 11 11 N 1.46501 * 109.46642 * 65.11639 * 10 9 7 12 12 S 1.65610 * 119.99709 * 164.38978 * 11 10 9 13 13 O 1.42096 * 104.27484 * 180.79629 * 12 11 10 14 14 O 1.42099 * 104.27615 * 308.65998 * 12 11 10 15 15 C 1.81405 * 104.44710 * 64.72558 * 12 11 10 16 16 C 1.50694 * 109.46874 * 180.02562 * 15 12 11 17 17 C 1.38389 * 119.92719 * 269.72362 * 16 15 12 18 18 C 1.38342 * 120.30714 * 179.72588 * 17 16 15 19 19 C 1.37971 * 120.15076 * 0.55160 * 18 17 16 20 20 C 1.39611 * 119.84021 * 359.72766 * 19 18 17 21 21 C 1.47726 * 120.14473 * 180.02562 * 20 19 18 22 22 O 1.21469 * 119.99990 * 179.97438 * 21 20 19 23 23 O 1.34712 * 120.00306 * 359.97188 * 21 20 19 24 24 C 1.37919 * 119.92773 * 90.00231 * 16 15 12 25 25 C 1.53001 * 117.50092 * 230.40302 * 9 7 2 26 26 C 1.52998 * 117.50417 * 299.06637 * 9 7 2 27 27 H 0.97001 * 120.00392 * 5.03320 * 1 2 3 28 28 H 1.09003 * 109.46778 * 305.12561 * 10 9 7 29 29 H 1.08998 * 109.47465 * 185.11854 * 10 9 7 30 30 H 0.96993 * 120.00983 * 344.11401 * 11 10 9 31 31 H 1.08994 * 109.47389 * 300.00152 * 15 12 11 32 32 H 1.08997 * 109.47090 * 60.00235 * 15 12 11 33 33 H 1.08009 * 119.84444 * 0.02562 * 17 16 15 34 34 H 1.08007 * 119.92887 * 180.26366 * 18 17 16 35 35 H 1.07991 * 120.07898 * 179.75002 * 19 18 17 36 36 H 0.96704 * 117.00365 * 179.97438 * 23 21 20 37 37 H 1.08002 * 120.07602 * 359.97438 * 24 16 15 38 38 H 1.08993 * 117.50073 * 215.00561 * 25 9 7 39 39 H 1.08999 * 117.49319 * 0.02710 * 25 9 7 40 40 H 1.09003 * 117.49623 * 359.97369 * 26 9 7 41 41 H 1.08994 * 117.50519 * 144.96888 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0777 -1.1979 -0.1203 9 6 1.2606 -2.4936 0.1697 10 6 0.6718 -3.0885 -1.1110 11 7 1.7582 -3.4649 -2.0189 12 16 1.4569 -4.4736 -3.2974 13 8 2.7208 -4.6264 -3.9285 14 8 0.7886 -5.5851 -2.7168 15 6 0.3249 -3.5336 -4.3585 16 6 -0.0275 -4.3569 -5.5704 17 6 0.7443 -4.2655 -6.7155 18 6 0.4312 -5.0219 -7.8307 19 6 -0.6608 -5.8650 -7.8119 20 6 -1.4471 -5.9578 -6.6621 21 6 -2.6175 -6.8587 -6.6344 22 8 -3.2995 -6.9378 -5.6324 23 8 -2.9284 -7.5926 -7.7205 24 6 -1.1219 -5.1956 -5.5380 25 6 1.7748 -3.4691 1.2303 26 6 0.4759 -2.6947 1.4677 27 1 -0.4851 0.8368 -0.0737 28 1 0.0335 -2.3492 -1.5950 29 1 0.0824 -3.9715 -0.8640 30 1 2.6531 -3.1201 -1.8737 31 1 -0.5829 -3.2985 -3.8030 32 1 0.8072 -2.6087 -4.6748 33 1 1.5979 -3.6040 -6.7369 34 1 1.0403 -4.9489 -8.7196 35 1 -0.9064 -6.4519 -8.6845 36 1 -3.7030 -8.1679 -7.6546 37 1 -1.7259 -5.2631 -4.6452 38 1 1.6936 -4.5346 1.0156 39 1 2.6510 -3.1707 1.8060 40 1 0.4982 -1.8871 2.1995 41 1 -0.4599 -3.2503 1.4092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404140205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:30 Heat of formation + Delta-G solvation = -116.509487 kcal Electronic energy + Delta-G solvation = -26780.383793 eV Core-core repulsion = 22753.048803 eV Total energy + Delta-G solvation = -4027.334991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70972 -39.14944 -37.13269 -36.72364 -36.36536 -35.65039 -33.45684 -33.31324 -32.01887 -31.59808 -27.69319 -25.99825 -25.10134 -24.93607 -22.33183 -21.37299 -21.13374 -19.49810 -18.96444 -18.22943 -17.68203 -17.15506 -16.56546 -16.31654 -16.01528 -15.88602 -15.75557 -15.24435 -14.75405 -14.73525 -14.24565 -13.79969 -13.68084 -13.49201 -13.08375 -12.89129 -12.70809 -12.42011 -12.07937 -12.06024 -11.86524 -11.81197 -11.70133 -11.57876 -11.36773 -11.07280 -11.04879 -10.99927 -10.88180 -10.55452 -10.25060 -9.61739 -9.41055 -9.25180 -8.98631 -8.65520 -8.48174 -8.20456 -6.14816 -4.22139 0.25283 0.47882 1.05863 2.25005 2.66365 3.11804 3.22528 3.28654 3.31590 3.40667 3.92070 4.26695 4.30267 4.31022 4.53913 4.65369 4.78099 4.91984 4.96979 5.13252 5.22081 5.28402 5.34458 5.51970 5.66427 5.83245 5.89863 5.98490 6.05978 6.17304 6.22888 6.31138 6.37503 6.44063 6.53436 6.74642 6.96494 7.05694 7.35610 7.48668 7.58809 7.71027 7.76883 8.31403 8.79595 9.44544 10.93058 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.002936 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.582585 B = 9534.177392 C = 9833.460371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.499 4.499 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.154 3.846 11 N -1.095 6.095 12 S 2.608 3.392 13 O -0.965 6.965 14 O -0.955 6.955 15 C -0.596 4.596 16 C -0.094 4.094 17 C -0.069 4.069 18 C -0.130 4.130 19 C -0.058 4.058 20 C -0.128 4.128 21 C 0.527 3.473 22 O -0.506 6.506 23 O -0.513 6.513 24 C -0.041 4.041 25 C -0.208 4.208 26 C -0.152 4.152 27 H 0.262 0.738 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.421 0.579 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.415 0.585 37 H 0.148 0.852 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 -9.114 -16.334 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.079 0.921 9 C 0.034 3.966 10 C 0.028 3.972 11 N -0.857 5.857 12 S 2.699 3.301 13 O -0.955 6.955 14 O -0.945 6.945 15 C -0.721 4.721 16 C -0.096 4.096 17 C -0.088 4.088 18 C -0.148 4.148 19 C -0.076 4.076 20 C -0.130 4.130 21 C 0.371 3.629 22 O -0.395 6.395 23 O -0.325 6.325 24 C -0.060 4.060 25 C -0.246 4.246 26 C -0.191 4.191 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.257 0.743 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.274 0.726 37 H 0.166 0.834 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.749 -9.662 -16.155 19.024 hybrid contribution -0.237 1.498 0.030 1.517 sum -2.986 -8.165 -16.125 18.319 Atomic orbital electron populations 1.69952 1.05862 1.27050 1.48464 1.24980 0.94814 0.98886 0.94329 0.86706 0.79685 0.83083 0.78791 1.20198 1.21314 1.20169 1.20357 0.93183 0.88648 1.51461 0.92080 1.18877 0.98372 0.93881 0.85449 1.20989 0.87093 0.97127 0.91981 1.55251 1.19718 1.68961 1.41785 1.05023 0.75069 0.75341 0.74655 1.93558 1.38717 1.85869 1.77355 1.93589 1.77423 1.48537 1.74928 1.29800 1.19526 1.13267 1.09520 1.18980 0.97159 0.98617 0.94850 1.21556 0.98218 0.97212 0.91770 1.21196 0.97692 0.96948 0.98998 1.21546 0.93024 0.96100 0.96953 1.18974 0.96562 1.00896 0.96529 1.20817 0.83811 0.78073 0.80168 1.90930 1.51021 1.64394 1.33125 1.84532 1.51289 1.55397 1.41308 1.21322 0.94916 0.92002 0.97798 1.23023 0.98247 0.95985 1.07310 1.22555 0.92714 1.01192 1.02619 0.92793 0.91255 0.93134 0.74292 0.83499 0.83387 0.84159 0.84325 0.84016 0.72602 0.83438 0.91295 0.90349 0.89889 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.87 12.97 55.43 0.72 -22.15 16 2 C 0.07 1.86 5.38 -17.82 -0.10 1.77 16 3 Si 0.89 19.79 29.55 -169.99 -5.02 14.76 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.50 -12.38 8.46 -34.44 -0.29 -12.68 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.04 0.82 1.43 -155.66 -0.22 0.60 16 10 C 0.15 3.11 5.96 -4.04 -0.02 3.09 16 11 N -1.10 -19.58 5.84 -10.61 -0.06 -19.64 16 12 S 2.61 42.30 5.44 -107.50 -0.58 41.71 16 13 O -0.96 -17.21 18.08 -57.54 -1.04 -18.25 16 14 O -0.95 -18.26 17.50 -57.54 -1.01 -19.26 16 15 C -0.60 -7.54 6.19 36.00 0.22 -7.32 16 16 C -0.09 -1.17 5.13 -104.69 -0.54 -1.71 16 17 C -0.07 -0.72 9.69 -39.49 -0.38 -1.10 16 18 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 19 C -0.06 -0.52 9.62 -39.17 -0.38 -0.90 16 20 C -0.13 -1.48 5.87 -104.98 -0.62 -2.10 16 21 C 0.53 6.01 8.27 34.61 0.29 6.29 16 22 O -0.51 -7.39 17.13 -19.24 -0.33 -7.72 16 23 O -0.51 -3.87 12.68 -40.52 -0.51 -4.38 16 24 C -0.04 -0.53 9.24 -39.17 -0.36 -0.90 16 25 C -0.21 -4.38 9.96 -26.69 -0.27 -4.65 16 26 C -0.15 -3.39 9.48 -26.69 -0.25 -3.64 16 27 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 28 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.05 0.99 7.64 -51.93 -0.40 0.59 16 30 H 0.42 7.50 8.34 -34.47 -0.29 7.21 16 31 H 0.15 1.73 8.08 -51.93 -0.42 1.31 16 32 H 0.15 1.57 8.08 -51.93 -0.42 1.15 16 33 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.14 0.94 7.61 -52.49 -0.40 0.54 16 36 H 0.42 1.30 9.11 45.56 0.42 1.71 16 37 H 0.15 1.95 7.65 -52.49 -0.40 1.55 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -33.38 374.73 -9.93 -43.30 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -4.41 Total: 10.74 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -3.32 Total: -24.76 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.66 Total: -41.79 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -2.89 Total: -49.62 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 42.30 SS G_CDS: -0.58 Total: 41.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.38 -9.93 -43.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404140205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.208 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds