Wall clock time and date at job start Tue Mar 31 2020 22:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48505 * 109.46774 * 239.99654 * 3 2 1 5 5 H 1.48502 * 109.47277 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47258 * 119.99648 * 3 2 1 7 7 C 1.37881 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07989 * 119.99933 * 172.57650 * 7 2 1 9 9 C 1.50697 * 119.99664 * 352.57636 * 7 2 1 10 10 C 1.53005 * 115.55208 * 84.73604 * 9 7 2 11 11 N 1.46501 * 109.46642 * 65.11639 * 10 9 7 12 12 S 1.65610 * 119.99709 * 164.38978 * 11 10 9 13 13 O 1.42096 * 104.27484 * 180.79629 * 12 11 10 14 14 O 1.42099 * 104.27615 * 308.65998 * 12 11 10 15 15 C 1.81405 * 104.44710 * 64.72558 * 12 11 10 16 16 C 1.50694 * 109.46874 * 180.02562 * 15 12 11 17 17 C 1.38389 * 119.92719 * 269.72362 * 16 15 12 18 18 C 1.38342 * 120.30714 * 179.72588 * 17 16 15 19 19 C 1.37971 * 120.15076 * 0.55160 * 18 17 16 20 20 C 1.39611 * 119.84021 * 359.72766 * 19 18 17 21 21 C 1.47726 * 120.14473 * 180.02562 * 20 19 18 22 22 O 1.21469 * 119.99990 * 179.97438 * 21 20 19 23 23 O 1.34712 * 120.00306 * 359.97188 * 21 20 19 24 24 C 1.37919 * 119.92773 * 90.00231 * 16 15 12 25 25 C 1.53001 * 117.50092 * 230.40302 * 9 7 2 26 26 C 1.52998 * 117.50417 * 299.06637 * 9 7 2 27 27 H 0.97001 * 120.00392 * 5.03320 * 1 2 3 28 28 H 1.09003 * 109.46778 * 305.12561 * 10 9 7 29 29 H 1.08998 * 109.47465 * 185.11854 * 10 9 7 30 30 H 0.96993 * 120.00983 * 344.11401 * 11 10 9 31 31 H 1.08994 * 109.47389 * 300.00152 * 15 12 11 32 32 H 1.08997 * 109.47090 * 60.00235 * 15 12 11 33 33 H 1.08009 * 119.84444 * 0.02562 * 17 16 15 34 34 H 1.08007 * 119.92887 * 180.26366 * 18 17 16 35 35 H 1.07991 * 120.07898 * 179.75002 * 19 18 17 36 36 H 0.96704 * 117.00365 * 179.97438 * 23 21 20 37 37 H 1.08002 * 120.07602 * 359.97438 * 24 16 15 38 38 H 1.08993 * 117.50073 * 215.00561 * 25 9 7 39 39 H 1.08999 * 117.49319 * 0.02710 * 25 9 7 40 40 H 1.09003 * 117.49623 * 359.97369 * 26 9 7 41 41 H 1.08994 * 117.50519 * 144.96888 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0777 -1.1979 -0.1203 9 6 1.2606 -2.4936 0.1697 10 6 0.6718 -3.0885 -1.1110 11 7 1.7582 -3.4649 -2.0189 12 16 1.4569 -4.4736 -3.2974 13 8 2.7208 -4.6264 -3.9285 14 8 0.7886 -5.5851 -2.7168 15 6 0.3249 -3.5336 -4.3585 16 6 -0.0275 -4.3569 -5.5704 17 6 0.7443 -4.2655 -6.7155 18 6 0.4312 -5.0219 -7.8307 19 6 -0.6608 -5.8650 -7.8119 20 6 -1.4471 -5.9578 -6.6621 21 6 -2.6175 -6.8587 -6.6344 22 8 -3.2995 -6.9378 -5.6324 23 8 -2.9284 -7.5926 -7.7205 24 6 -1.1219 -5.1956 -5.5380 25 6 1.7748 -3.4691 1.2303 26 6 0.4759 -2.6947 1.4677 27 1 -0.4851 0.8368 -0.0737 28 1 0.0335 -2.3492 -1.5950 29 1 0.0824 -3.9715 -0.8640 30 1 2.6531 -3.1201 -1.8737 31 1 -0.5829 -3.2985 -3.8030 32 1 0.8072 -2.6087 -4.6748 33 1 1.5979 -3.6040 -6.7369 34 1 1.0403 -4.9489 -8.7196 35 1 -0.9064 -6.4519 -8.6845 36 1 -3.7030 -8.1679 -7.6546 37 1 -1.7259 -5.2631 -4.6452 38 1 1.6936 -4.5346 1.0156 39 1 2.6510 -3.1707 1.8060 40 1 0.4982 -1.8871 2.1995 41 1 -0.4599 -3.2503 1.4092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404140205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:29 Heat of formation + Delta-G solvation = -140.040963 kcal Electronic energy + Delta-G solvation = -26781.404195 eV Core-core repulsion = 22753.048803 eV Total energy + Delta-G solvation = -4028.355392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53661 -39.96023 -38.81090 -38.14092 -37.15649 -37.03829 -34.86421 -34.32494 -33.91674 -32.38961 -28.64021 -27.80888 -26.63693 -25.91346 -23.15698 -22.88938 -22.16993 -21.23356 -20.28290 -19.07569 -18.66014 -18.42838 -18.19225 -17.27491 -17.14289 -17.04362 -16.73452 -16.58972 -16.31708 -15.85898 -15.58673 -15.23558 -14.60506 -14.52811 -14.34029 -14.04712 -13.93573 -13.73826 -13.70253 -13.23696 -13.12369 -12.98851 -12.93735 -12.83398 -12.78329 -12.67010 -12.43962 -12.32687 -12.12083 -12.00403 -11.77312 -11.37425 -10.86138 -10.47556 -10.28175 -10.20710 -9.97532 -9.83513 -8.06567 -6.18084 -0.87479 -0.44103 0.21150 1.41635 1.45936 1.49448 1.54444 1.77504 1.94650 2.45803 2.57978 2.75508 3.15986 3.22039 3.26433 3.52784 3.71320 3.85969 3.97634 4.06539 4.15097 4.18458 4.42382 4.46732 4.56905 4.62554 4.67507 4.73944 4.83166 4.84608 5.02916 5.11914 5.23004 5.26995 5.28508 5.32959 5.50374 5.63462 5.69741 5.71769 5.81600 6.25542 6.43818 6.87419 6.89391 7.50360 9.00609 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.002936 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.582585 B = 9534.177392 C = 9833.460371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.034 3.966 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.016 3.984 10 C 0.163 3.837 11 N -1.100 6.100 12 S 2.614 3.386 13 O -0.982 6.982 14 O -0.991 6.991 15 C -0.573 4.573 16 C -0.117 4.117 17 C -0.074 4.074 18 C -0.122 4.122 19 C -0.044 4.044 20 C -0.148 4.148 21 C 0.533 3.467 22 O -0.550 6.550 23 O -0.497 6.497 24 C -0.064 4.064 25 C -0.193 4.193 26 C -0.159 4.159 27 H 0.261 0.739 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.420 0.580 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.435 0.565 37 H 0.130 0.870 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 -9.123 -19.088 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.167 4.167 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.014 3.986 10 C 0.036 3.964 11 N -0.860 5.860 12 S 2.710 3.290 13 O -0.972 6.972 14 O -0.982 6.982 15 C -0.703 4.703 16 C -0.119 4.119 17 C -0.093 4.093 18 C -0.140 4.140 19 C -0.062 4.062 20 C -0.149 4.149 21 C 0.378 3.622 22 O -0.442 6.442 23 O -0.311 6.311 24 C -0.083 4.083 25 C -0.230 4.230 26 C -0.197 4.197 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.256 0.744 31 H 0.171 0.829 32 H 0.191 0.809 33 H 0.178 0.822 34 H 0.196 0.804 35 H 0.189 0.811 36 H 0.297 0.703 37 H 0.148 0.852 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.008 -9.712 -18.891 21.336 hybrid contribution -0.481 1.426 0.739 1.676 sum -2.489 -8.286 -18.152 20.108 Atomic orbital electron populations 1.70045 1.06834 1.27462 1.49475 1.25557 0.95458 1.01399 0.94318 0.85846 0.78525 0.79879 0.78719 1.19366 1.21443 1.20502 1.20592 0.93205 0.89750 1.51025 0.92432 1.19038 0.98917 0.94033 0.86612 1.20737 0.87453 0.96855 0.91321 1.55173 1.19205 1.68847 1.42744 1.04723 0.75009 0.74860 0.74411 1.93525 1.40219 1.86202 1.77291 1.93538 1.77828 1.50741 1.76052 1.29538 1.18422 1.13363 1.08982 1.19029 0.98010 0.99408 0.95442 1.21933 0.98253 0.97580 0.91525 1.21669 0.97401 0.95337 0.99559 1.21928 0.92102 0.95534 0.96671 1.19146 0.97361 1.01214 0.97147 1.20877 0.83311 0.77858 0.80135 1.90914 1.52489 1.65930 1.34857 1.84477 1.52295 1.55024 1.39295 1.21335 0.95575 0.93302 0.98122 1.23012 0.97530 0.96409 1.06083 1.22496 0.93811 1.01184 1.02253 0.92978 0.91932 0.92865 0.74440 0.82878 0.80877 0.82247 0.80441 0.81068 0.70250 0.85221 0.89937 0.90198 0.91803 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.22 12.97 21.45 0.28 -46.94 16 2 C 0.03 1.71 5.38 84.66 0.46 2.17 16 3 Si 0.94 40.40 29.55 68.60 2.03 42.43 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.51 -25.23 8.46 25.60 0.22 -25.01 16 8 H 0.06 2.83 7.82 -2.92 -0.02 2.81 16 9 C 0.02 0.72 1.43 -52.93 -0.08 0.65 16 10 C 0.16 6.63 5.96 86.38 0.51 7.14 16 11 N -1.10 -39.34 5.84 -187.48 -1.09 -40.43 16 12 S 2.61 84.59 5.44 -56.49 -0.31 84.29 16 13 O -0.98 -34.50 18.08 -127.65 -2.31 -36.81 16 14 O -0.99 -38.74 17.50 -127.65 -2.23 -40.97 16 15 C -0.57 -14.04 6.19 71.23 0.44 -13.60 16 16 C -0.12 -2.77 5.13 -19.91 -0.10 -2.87 16 17 C -0.07 -1.34 9.69 22.33 0.22 -1.13 16 18 C -0.12 -1.63 10.03 22.23 0.22 -1.41 16 19 C -0.04 -0.65 9.62 22.54 0.22 -0.44 16 20 C -0.15 -3.23 5.87 -20.10 -0.12 -3.35 16 21 C 0.53 11.75 8.27 70.33 0.58 12.33 16 22 O -0.55 -16.43 17.13 19.94 0.34 -16.09 16 23 O -0.50 -6.39 12.68 -56.21 -0.71 -7.10 16 24 C -0.06 -1.65 9.24 22.53 0.21 -1.44 16 25 C -0.19 -8.07 9.96 30.62 0.30 -7.76 16 26 C -0.16 -7.13 9.48 30.62 0.29 -6.84 16 27 H 0.26 13.22 8.32 -92.71 -0.77 12.45 16 28 H 0.06 2.60 8.14 -2.39 -0.02 2.59 16 29 H 0.05 2.11 7.64 -2.39 -0.02 2.09 16 30 H 0.42 14.99 8.34 -96.75 -0.81 14.18 16 31 H 0.15 3.59 8.08 -2.39 -0.02 3.57 16 32 H 0.17 3.32 8.08 -2.39 -0.02 3.30 16 33 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.17 1.49 7.61 -2.91 -0.02 1.47 16 36 H 0.44 1.79 9.11 -74.05 -0.67 1.12 16 37 H 0.13 3.69 7.65 -2.91 -0.02 3.66 16 38 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.06 3.07 8.14 -2.39 -0.02 3.06 16 41 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -72.38 374.73 -1.04 -73.41 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.40 Total: 29.77 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 3.37 Total: -41.55 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -0.82 Total: -87.37 kcal Atomic # 8 Polarization: -96.06 SS G_CDS: -4.91 Total: -100.97 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 84.59 SS G_CDS: -0.31 Total: 84.29 kcal Total: -72.38 -1.04 -73.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404140205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.629 kcal (2) G-P(sol) polarization free energy of solvation -72.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds