Wall clock time and date at job start Tue Mar 31 2020 22:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48501 * 109.47159 * 269.99717 * 3 2 1 5 5 H 1.48506 * 109.47496 * 29.99525 * 3 2 1 6 6 H 1.48498 * 109.47391 * 149.99937 * 3 2 1 7 7 C 1.37872 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00230 * 175.28527 * 7 2 1 9 9 C 1.50700 * 119.99989 * 355.56043 * 7 2 1 10 10 C 1.53004 * 115.55097 * 274.99073 * 9 7 2 11 11 N 1.46495 * 109.47052 * 294.33149 * 10 9 7 12 12 S 1.65609 * 120.00046 * 159.13246 * 11 10 9 13 13 O 1.42102 * 104.27418 * 181.07330 * 12 11 10 14 14 O 1.42097 * 104.27570 * 308.93027 * 12 11 10 15 15 C 1.81396 * 104.44756 * 65.00065 * 12 11 10 16 16 C 1.50703 * 109.47146 * 180.02562 * 15 12 11 17 17 C 1.38371 * 119.84407 * 269.72614 * 16 15 12 18 18 C 1.37942 * 120.14751 * 179.71887 * 17 16 15 19 19 C 1.39632 * 119.84987 * 0.57301 * 18 17 16 20 20 C 1.47723 * 120.15216 * 179.67826 * 19 18 17 21 21 O 1.21467 * 119.99707 * 180.02562 * 20 19 18 22 22 O 1.34709 * 119.99843 * 0.02562 * 20 19 18 23 23 C 1.39637 * 119.69532 * 359.70348 * 19 18 17 24 24 C 1.37938 * 119.84956 * 359.97438 * 23 19 18 25 25 C 1.53001 * 117.50004 * 129.31969 * 9 7 2 26 26 C 1.53005 * 117.50245 * 60.65787 * 9 7 2 27 27 H 0.96996 * 120.00045 * 5.00631 * 1 2 3 28 28 H 1.09003 * 109.47066 * 54.32894 * 10 9 7 29 29 H 1.09002 * 109.47448 * 174.32687 * 10 9 7 30 30 H 0.97000 * 120.00213 * 339.13692 * 11 10 9 31 31 H 1.09007 * 109.46979 * 299.99967 * 15 12 11 32 32 H 1.08998 * 109.47672 * 59.99974 * 15 12 11 33 33 H 1.08002 * 119.92686 * 359.97438 * 17 16 15 34 34 H 1.07998 * 120.07487 * 180.26999 * 18 17 16 35 35 H 0.96703 * 116.99820 * 180.02562 * 22 20 19 36 36 H 1.07999 * 120.07095 * 179.97438 * 23 19 18 37 37 H 1.07994 * 119.92529 * 179.97438 * 24 23 19 38 38 H 1.08991 * 117.49791 * 359.97438 * 25 9 7 39 39 H 1.09007 * 117.49553 * 145.02396 * 25 9 7 40 40 H 1.08993 * 117.50038 * 214.98204 * 26 9 7 41 41 H 1.08998 * 117.48996 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0763 9 6 1.2545 -2.4971 0.1021 10 6 0.9144 -2.9538 1.5223 11 7 2.1508 -3.2588 2.2464 12 16 2.1586 -3.2728 3.9024 13 8 3.5044 -3.5750 4.2439 14 8 1.5717 -2.0309 4.2661 15 6 1.0642 -4.6489 4.3485 16 6 0.9884 -4.7643 5.8492 17 6 1.8879 -5.5706 6.5241 18 6 1.8279 -5.6762 7.8982 19 6 0.8490 -4.9768 8.6069 20 6 0.7742 -5.0907 10.0779 21 8 -0.0788 -4.4813 10.6915 22 8 1.6518 -5.8703 10.7385 23 6 -0.0591 -4.1695 7.9188 24 6 0.0165 -4.0677 6.5453 25 6 1.5761 -3.5797 -0.9301 26 6 0.2485 -2.8214 -1.0041 27 1 -0.4850 0.8368 -0.0733 28 1 0.3765 -2.1597 2.0402 29 1 0.2900 -3.8461 1.4773 30 1 2.9649 -3.4525 1.7559 31 1 0.0673 -4.4650 3.9478 32 1 1.4578 -5.5761 3.9319 33 1 2.6413 -6.1151 5.9743 34 1 2.5333 -6.3024 8.4242 35 1 1.5631 -5.9135 11.7005 36 1 -0.8189 -3.6261 8.4609 37 1 -0.6855 -3.4440 6.0118 38 1 2.3299 -3.3493 -1.6828 39 1 1.5450 -4.6173 -0.5974 40 1 -0.6554 -3.3603 -0.7202 41 1 0.1289 -2.0919 -1.8051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404140838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:15 Heat of formation + Delta-G solvation = -114.325170 kcal Electronic energy + Delta-G solvation = -26570.883038 eV Core-core repulsion = 22543.642766 eV Total energy + Delta-G solvation = -4027.240272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75869 -39.20661 -37.15554 -36.72667 -36.44804 -35.61242 -33.51214 -33.36815 -31.91949 -31.40947 -28.41198 -26.02301 -24.90539 -24.01997 -23.09586 -21.30770 -21.17013 -19.43134 -18.96738 -18.50570 -17.81154 -17.35045 -16.60359 -16.35891 -15.96393 -15.81539 -15.47748 -15.24189 -14.77104 -14.62496 -14.25995 -13.89915 -13.63787 -13.51658 -13.28389 -13.13544 -12.78975 -12.34356 -12.19384 -12.08006 -11.93475 -11.79211 -11.64335 -11.42707 -11.30797 -11.10392 -10.96111 -10.94378 -10.89635 -10.50624 -10.25875 -9.57166 -9.38292 -9.32873 -9.09109 -8.65466 -8.45950 -8.18971 -6.05416 -4.12721 0.04940 0.64658 0.99512 2.17688 2.62938 3.09379 3.30607 3.38548 3.39272 3.43107 3.90092 4.17918 4.26674 4.40699 4.48542 4.59015 4.75718 4.94992 4.99822 5.17932 5.21360 5.24132 5.25638 5.47627 5.65266 5.79233 5.82741 5.95864 6.05343 6.10899 6.15833 6.17247 6.28162 6.42307 6.43280 6.65161 6.94495 7.04135 7.34296 7.51598 7.52440 7.61751 7.85919 8.35687 8.87685 9.54261 11.02251 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.002686 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.470870 B =10423.775334 C =10889.542284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.494 4.494 8 H 0.060 0.940 9 C 0.034 3.966 10 C 0.154 3.846 11 N -1.094 6.094 12 S 2.608 3.392 13 O -0.963 6.963 14 O -0.940 6.940 15 C -0.606 4.606 16 C -0.045 4.045 17 C -0.123 4.123 18 C -0.057 4.057 19 C -0.131 4.131 20 C 0.529 3.471 21 O -0.513 6.513 22 O -0.512 6.512 23 C -0.049 4.049 24 C -0.118 4.118 25 C -0.212 4.212 26 C -0.145 4.145 27 H 0.261 0.739 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.417 0.583 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.415 0.585 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -14.573 13.922 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.032 3.968 10 C 0.028 3.972 11 N -0.854 5.854 12 S 2.697 3.303 13 O -0.953 6.953 14 O -0.929 6.929 15 C -0.730 4.730 16 C -0.047 4.047 17 C -0.142 4.142 18 C -0.076 4.076 19 C -0.132 4.132 20 C 0.374 3.626 21 O -0.402 6.402 22 O -0.324 6.324 23 C -0.067 4.067 24 C -0.137 4.137 25 C -0.249 4.249 26 C -0.183 4.183 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.252 0.748 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.274 0.726 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.375 -13.637 14.386 19.825 hybrid contribution 0.135 0.232 0.081 0.280 sum 0.510 -13.405 14.467 19.729 Atomic orbital electron populations 1.69957 1.05831 1.26908 1.48744 1.24955 0.94877 0.98997 0.94264 0.86640 0.80238 0.83553 0.77941 1.20771 1.21026 1.19655 1.20342 0.92725 0.88489 1.51589 0.92186 1.18924 0.99051 0.93437 0.85389 1.21040 0.83011 0.97355 0.95818 1.55202 1.19809 1.86367 1.24048 1.05151 0.74981 0.76185 0.73933 1.93564 1.32502 1.86056 1.83166 1.93631 1.79621 1.37148 1.82539 1.29952 1.19950 1.23371 0.99772 1.19378 0.95951 0.96862 0.92471 1.21214 0.99331 0.99197 0.94421 1.21459 0.95947 0.96312 0.93841 1.19114 1.00869 1.04042 0.89196 1.20864 0.77760 0.75302 0.88683 1.90899 1.35719 1.44139 1.69457 1.84555 1.55783 1.64386 1.27636 1.21294 0.96756 0.94792 0.93849 1.21235 0.98746 0.99738 0.93979 1.23035 1.00715 0.95486 1.05685 1.22504 0.90670 1.01402 1.03758 0.92903 0.89849 0.94830 0.74820 0.83542 0.83692 0.84064 0.83800 0.72632 0.83766 0.83673 0.90333 0.91665 0.91858 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.04 12.66 55.43 0.70 -23.34 16 2 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.49 -12.81 8.75 -34.44 -0.30 -13.11 16 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.03 0.76 1.49 -155.66 -0.23 0.53 16 10 C 0.15 2.98 6.00 -4.04 -0.02 2.95 16 11 N -1.09 -18.69 5.77 -10.61 -0.06 -18.75 16 12 S 2.61 41.67 5.44 -107.50 -0.59 41.09 16 13 O -0.96 -17.07 18.08 -57.54 -1.04 -18.11 16 14 O -0.94 -18.96 17.43 -57.54 -1.00 -19.96 16 15 C -0.61 -6.60 6.19 36.01 0.22 -6.37 16 16 C -0.04 -0.51 5.15 -104.53 -0.54 -1.05 16 17 C -0.12 -1.25 9.68 -39.64 -0.38 -1.63 16 18 C -0.06 -0.55 9.62 -39.17 -0.38 -0.92 16 19 C -0.13 -1.39 5.87 -104.98 -0.62 -2.01 16 20 C 0.53 5.45 8.27 34.61 0.29 5.73 16 21 O -0.51 -6.63 17.13 -19.24 -0.33 -6.96 16 22 O -0.51 -3.58 12.68 -40.52 -0.51 -4.10 16 23 C -0.05 -0.53 9.60 -39.17 -0.38 -0.91 16 24 C -0.12 -1.33 9.68 -39.64 -0.38 -1.72 16 25 C -0.21 -4.11 9.96 -26.69 -0.27 -4.38 16 26 C -0.14 -3.10 9.15 -26.69 -0.24 -3.34 16 27 H 0.26 6.90 8.32 -40.82 -0.34 6.57 16 28 H 0.08 1.83 7.60 -51.93 -0.39 1.44 16 29 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.42 6.83 8.66 -34.48 -0.30 6.53 16 31 H 0.15 1.37 8.08 -51.92 -0.42 0.95 16 32 H 0.14 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.14 1.04 7.61 -52.49 -0.40 0.64 16 35 H 0.41 1.03 9.11 45.56 0.42 1.45 16 36 H 0.14 1.44 7.65 -52.49 -0.40 1.03 16 37 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -34.84 374.58 -9.96 -44.80 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.42 Total: 7.86 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -3.33 Total: -24.38 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.64 Total: -42.10 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -2.89 Total: -49.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 41.67 SS G_CDS: -0.59 Total: 41.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.84 -9.96 -44.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404140838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.524 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds