Wall clock time and date at job start Tue Mar 31 2020 22:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48499 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47146 * 300.00664 * 3 2 1 6 6 H 1.48507 * 109.46889 * 60.00513 * 3 2 1 7 7 C 1.37877 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00009 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.53855 * 61.16057 * 9 7 2 11 11 C 1.54267 * 110.48772 * 298.54805 * 9 7 2 12 12 C 1.53876 * 106.59870 * 217.70999 * 11 9 7 13 13 C 1.54261 * 106.59990 * 0.02562 * 12 11 9 14 14 H 1.08999 * 110.48469 * 264.93049 * 13 12 11 15 15 N 1.46496 * 110.48711 * 142.28862 * 13 12 11 16 16 S 1.65593 * 120.00339 * 96.45438 * 15 13 12 17 17 O 1.42101 * 106.40394 * 178.53861 * 16 15 13 18 18 O 1.42102 * 106.40191 * 311.45767 * 16 15 13 19 19 C 1.76204 * 107.22158 * 64.99775 * 16 15 13 20 20 C 1.38387 * 119.92130 * 269.72943 * 19 16 15 21 21 C 1.38354 * 120.29888 * 179.76227 * 20 19 16 22 22 C 1.37970 * 120.14713 * 0.50943 * 21 20 19 23 23 C 1.39608 * 119.84847 * 359.74546 * 22 21 20 24 24 C 1.47729 * 120.14689 * 180.02562 * 23 22 21 25 25 O 1.21473 * 119.99641 * 179.97438 * 24 23 22 26 26 O 1.34704 * 120.00098 * 359.97438 * 24 23 22 27 27 C 1.37918 * 119.92318 * 90.00071 * 19 16 15 28 28 C 1.54888 * 104.19672 * 23.60631 * 13 12 11 29 29 H 0.97000 * 119.99775 * 359.97438 * 1 2 3 30 30 H 1.08995 * 110.03032 * 98.42726 * 11 9 7 31 31 H 1.08998 * 110.03405 * 336.99665 * 11 9 7 32 32 H 1.08998 * 110.02768 * 119.28860 * 12 11 9 33 33 H 1.08994 * 110.03051 * 240.71540 * 12 11 9 34 34 H 0.97004 * 119.99799 * 276.44884 * 15 13 12 35 35 H 1.07997 * 119.85325 * 0.02562 * 20 19 16 36 36 H 1.08000 * 119.92454 * 180.25932 * 21 20 19 37 37 H 1.07998 * 120.07366 * 179.76806 * 22 21 20 38 38 H 0.96700 * 117.00448 * 179.97438 * 26 24 23 39 39 H 1.08004 * 120.07619 * 359.95900 * 27 19 16 40 40 H 1.09005 * 110.75648 * 80.37263 * 28 13 12 41 41 H 1.08999 * 110.75852 * 203.74195 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6330 -2.5839 -0.8945 11 6 0.3834 -2.6217 1.2692 12 6 0.4449 -4.0968 1.7029 13 6 1.3482 -4.8190 0.6821 14 1 0.7462 -5.2785 -0.1019 15 7 2.1754 -5.8258 1.3515 16 16 1.6926 -7.4095 1.3786 17 8 2.7107 -8.1279 2.0617 18 8 0.3327 -7.4074 1.7909 19 6 1.7069 -7.9878 -0.2858 20 6 0.5696 -7.8737 -1.0660 21 6 0.5736 -8.3206 -2.3753 22 6 1.7100 -8.8932 -2.9086 23 6 2.8592 -9.0162 -2.1254 24 6 4.0798 -9.6276 -2.6898 25 8 5.0782 -9.7328 -2.0061 26 8 4.0855 -10.0685 -3.9627 27 6 2.8497 -8.5581 -0.8062 28 6 2.2342 -3.6924 0.0950 29 1 -0.4850 0.8401 0.0004 30 1 -0.6459 -2.3406 1.0466 31 1 0.7830 -1.9838 2.0575 32 1 0.8743 -4.1746 2.7017 33 1 -0.5546 -4.5315 1.6908 34 1 3.0062 -5.5647 1.7789 35 1 -0.3239 -7.4299 -0.6523 36 1 -0.3161 -8.2248 -2.9801 37 1 1.7107 -9.2451 -3.9296 38 1 4.9074 -10.4608 -4.2877 39 1 3.7354 -8.6499 -0.1950 40 1 3.0599 -3.4601 0.7678 41 1 2.6049 -3.9673 -0.8925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414332566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:14 Heat of formation + Delta-G solvation = -150.401484 kcal Electronic energy + Delta-G solvation = -27080.296572 eV Core-core repulsion = 23051.491914 eV Total energy + Delta-G solvation = -4028.804658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79762 -39.05659 -37.87185 -37.15957 -36.48148 -35.86565 -33.75773 -32.05933 -31.77205 -31.64611 -28.18517 -26.68259 -25.26129 -23.81347 -23.70684 -21.79981 -20.15036 -19.80820 -19.25217 -18.51518 -18.13895 -17.45863 -16.65100 -16.47655 -16.24945 -16.02118 -15.86290 -15.24862 -14.72097 -14.62352 -14.47521 -14.26447 -13.78887 -13.39596 -12.78049 -12.61917 -12.58078 -12.51140 -12.18743 -12.10700 -11.97458 -11.94760 -11.70615 -11.59888 -11.18194 -11.09116 -10.94882 -10.87056 -10.53582 -10.25873 -10.07201 -9.89560 -9.58272 -9.57141 -9.40562 -8.97638 -8.76504 -8.41789 -6.04394 -4.07361 0.08589 0.35637 0.59171 2.04056 2.54182 2.94032 3.21405 3.27479 3.36225 3.39549 3.70693 4.18017 4.37210 4.41519 4.49088 4.52516 4.73895 5.00350 5.10176 5.18448 5.27044 5.35285 5.47035 5.57137 5.62876 5.67015 5.76514 5.81398 6.04630 6.24586 6.32924 6.47798 6.53455 6.59881 6.73137 6.87588 7.14675 7.24620 7.29713 7.46469 7.69297 7.85725 7.97212 8.40499 8.95318 9.57149 11.05066 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003108 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.928876 B = 9007.738843 C = 9932.983215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.049 3.951 10 H 0.031 0.969 11 C -0.096 4.096 12 C -0.140 4.140 13 C 0.142 3.858 14 H 0.079 0.921 15 N -1.103 6.103 16 S 2.692 3.308 17 O -0.963 6.963 18 O -0.949 6.949 19 C -0.687 4.687 20 C 0.016 3.984 21 C -0.150 4.150 22 C -0.010 4.010 23 C -0.152 4.152 24 C 0.529 3.471 25 O -0.507 6.507 26 O -0.512 6.512 27 C 0.046 3.954 28 C -0.118 4.118 29 H 0.259 0.741 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.419 0.581 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.417 0.583 39 H 0.155 0.845 40 H 0.066 0.934 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -19.043 -6.125 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.049 0.951 11 C -0.134 4.134 12 C -0.179 4.179 13 C 0.036 3.964 14 H 0.097 0.903 15 N -0.864 5.864 16 S 2.779 3.221 17 O -0.953 6.953 18 O -0.939 6.939 19 C -0.771 4.771 20 C -0.003 4.003 21 C -0.168 4.168 22 C -0.028 4.028 23 C -0.154 4.154 24 C 0.373 3.627 25 O -0.396 6.396 26 O -0.324 6.324 27 C 0.027 3.973 28 C -0.157 4.157 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.255 0.745 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.276 0.724 39 H 0.173 0.827 40 H 0.085 0.915 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.561 -19.339 -5.168 20.078 hybrid contribution 1.423 0.859 -0.903 1.891 sum 2.983 -18.479 -6.072 19.679 Atomic orbital electron populations 1.69975 1.05842 1.26378 1.50416 1.24974 0.94840 0.99026 0.95105 0.86595 0.80167 0.84016 0.77540 1.19841 1.21120 1.21085 1.21159 0.92835 0.90393 1.50910 0.92564 1.19441 0.92051 0.91388 0.94101 0.95134 1.22076 1.01147 0.90691 0.99533 1.22734 0.98408 0.98610 0.98189 1.21911 0.92040 0.88626 0.93840 0.90265 1.55557 1.35916 1.24247 1.70633 1.02028 0.74031 0.72669 0.73340 1.93592 1.59085 1.71357 1.71241 1.93611 1.34910 1.86264 1.79124 1.31238 1.00618 1.17523 1.27751 1.21370 0.96192 0.89598 0.93103 1.21373 0.99153 1.00523 0.95794 1.21791 0.90990 0.90519 0.99544 1.19100 0.93067 1.07659 0.95551 1.20734 0.87633 0.74865 0.79452 1.90931 1.34884 1.53328 1.60467 1.84524 1.45271 1.73230 1.29406 1.21004 0.96620 0.86747 0.92922 1.22897 0.98739 0.95068 0.99005 0.93113 0.92359 0.92747 0.92259 0.92329 0.74520 0.83086 0.83723 0.83569 0.72393 0.82731 0.91517 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 12.35 55.43 0.68 -23.87 16 2 C 0.06 1.67 5.33 -17.82 -0.09 1.57 16 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.39 8.40 -34.44 -0.29 -13.68 16 8 H 0.06 1.45 7.77 -52.49 -0.41 1.04 16 9 C 0.05 1.13 2.80 -90.10 -0.25 0.88 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.10 -2.09 5.40 -25.61 -0.14 -2.23 16 12 C -0.14 -2.48 6.54 -25.61 -0.17 -2.65 16 13 C 0.14 2.22 3.39 -66.28 -0.22 2.00 16 14 H 0.08 1.11 7.40 -51.93 -0.38 0.73 16 15 N -1.10 -14.68 5.53 -3.49 -0.02 -14.70 16 16 S 2.69 36.01 5.67 -107.50 -0.61 35.40 16 17 O -0.96 -14.80 17.27 -57.17 -0.99 -15.78 16 18 O -0.95 -14.74 17.02 -57.17 -0.97 -15.72 16 19 C -0.69 -8.09 5.85 -39.64 -0.23 -8.32 16 20 C 0.02 0.17 8.97 -39.48 -0.35 -0.19 16 21 C -0.15 -1.24 10.03 -39.64 -0.40 -1.64 16 22 C -0.01 -0.09 9.62 -39.17 -0.38 -0.46 16 23 C -0.15 -1.60 5.87 -104.98 -0.62 -2.22 16 24 C 0.53 5.50 8.27 34.61 0.29 5.79 16 25 O -0.51 -6.80 17.13 -19.25 -0.33 -7.13 16 26 O -0.51 -3.48 12.68 -40.50 -0.51 -3.99 16 27 C 0.05 0.55 9.07 -39.17 -0.36 0.19 16 28 C -0.12 -2.15 5.92 -24.73 -0.15 -2.29 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.06 1.36 7.94 -51.93 -0.41 0.95 16 31 H 0.05 1.28 7.83 -51.93 -0.41 0.87 16 32 H 0.06 1.00 8.04 -51.93 -0.42 0.59 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.42 4.94 8.77 -34.46 -0.30 4.63 16 35 H 0.15 1.38 7.60 -52.49 -0.40 0.98 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.15 0.86 7.61 -52.49 -0.40 0.46 16 38 H 0.42 1.01 9.11 45.56 0.42 1.42 16 39 H 0.16 1.85 7.20 -52.48 -0.38 1.47 16 40 H 0.07 1.21 7.96 -51.93 -0.41 0.79 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -34.05 361.99 -10.00 -44.05 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.33 Total: 3.89 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -3.36 Total: -23.25 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.67 Total: -38.58 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -2.80 Total: -42.62 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 36.01 SS G_CDS: -0.61 Total: 35.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.05 -10.00 -44.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414332566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.348 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds