Wall clock time and date at job start Tue Mar 31 2020 22:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48499 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47146 * 300.00664 * 3 2 1 6 6 H 1.48507 * 109.46889 * 60.00513 * 3 2 1 7 7 C 1.37877 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00009 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.53855 * 61.16057 * 9 7 2 11 11 C 1.54267 * 110.48772 * 298.54805 * 9 7 2 12 12 C 1.53876 * 106.59870 * 217.70999 * 11 9 7 13 13 C 1.54261 * 106.59990 * 0.02562 * 12 11 9 14 14 H 1.08999 * 110.48469 * 264.93049 * 13 12 11 15 15 N 1.46496 * 110.48711 * 142.28862 * 13 12 11 16 16 S 1.65593 * 120.00339 * 96.45438 * 15 13 12 17 17 O 1.42101 * 106.40394 * 178.53861 * 16 15 13 18 18 O 1.42102 * 106.40191 * 311.45767 * 16 15 13 19 19 C 1.76204 * 107.22158 * 64.99775 * 16 15 13 20 20 C 1.38387 * 119.92130 * 269.72943 * 19 16 15 21 21 C 1.38354 * 120.29888 * 179.76227 * 20 19 16 22 22 C 1.37970 * 120.14713 * 0.50943 * 21 20 19 23 23 C 1.39608 * 119.84847 * 359.74546 * 22 21 20 24 24 C 1.47729 * 120.14689 * 180.02562 * 23 22 21 25 25 O 1.21473 * 119.99641 * 179.97438 * 24 23 22 26 26 O 1.34704 * 120.00098 * 359.97438 * 24 23 22 27 27 C 1.37918 * 119.92318 * 90.00071 * 19 16 15 28 28 C 1.54888 * 104.19672 * 23.60631 * 13 12 11 29 29 H 0.97000 * 119.99775 * 359.97438 * 1 2 3 30 30 H 1.08995 * 110.03032 * 98.42726 * 11 9 7 31 31 H 1.08998 * 110.03405 * 336.99665 * 11 9 7 32 32 H 1.08998 * 110.02768 * 119.28860 * 12 11 9 33 33 H 1.08994 * 110.03051 * 240.71540 * 12 11 9 34 34 H 0.97004 * 119.99799 * 276.44884 * 15 13 12 35 35 H 1.07997 * 119.85325 * 0.02562 * 20 19 16 36 36 H 1.08000 * 119.92454 * 180.25932 * 21 20 19 37 37 H 1.07998 * 120.07366 * 179.76806 * 22 21 20 38 38 H 0.96700 * 117.00448 * 179.97438 * 26 24 23 39 39 H 1.08004 * 120.07619 * 359.95900 * 27 19 16 40 40 H 1.09005 * 110.75648 * 80.37263 * 28 13 12 41 41 H 1.08999 * 110.75852 * 203.74195 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6330 -2.5839 -0.8945 11 6 0.3834 -2.6217 1.2692 12 6 0.4449 -4.0968 1.7029 13 6 1.3482 -4.8190 0.6821 14 1 0.7462 -5.2785 -0.1019 15 7 2.1754 -5.8258 1.3515 16 16 1.6926 -7.4095 1.3786 17 8 2.7107 -8.1279 2.0617 18 8 0.3327 -7.4074 1.7909 19 6 1.7069 -7.9878 -0.2858 20 6 0.5696 -7.8737 -1.0660 21 6 0.5736 -8.3206 -2.3753 22 6 1.7100 -8.8932 -2.9086 23 6 2.8592 -9.0162 -2.1254 24 6 4.0798 -9.6276 -2.6898 25 8 5.0782 -9.7328 -2.0061 26 8 4.0855 -10.0685 -3.9627 27 6 2.8497 -8.5581 -0.8062 28 6 2.2342 -3.6924 0.0950 29 1 -0.4850 0.8401 0.0004 30 1 -0.6459 -2.3406 1.0466 31 1 0.7830 -1.9838 2.0575 32 1 0.8743 -4.1746 2.7017 33 1 -0.5546 -4.5315 1.6908 34 1 3.0062 -5.5647 1.7789 35 1 -0.3239 -7.4299 -0.6523 36 1 -0.3161 -8.2248 -2.9801 37 1 1.7107 -9.2451 -3.9296 38 1 4.9074 -10.4608 -4.2877 39 1 3.7354 -8.6499 -0.1950 40 1 3.0599 -3.4601 0.7678 41 1 2.6049 -3.9673 -0.8925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414332566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:13 Heat of formation + Delta-G solvation = -174.991152 kcal Electronic energy + Delta-G solvation = -27081.362860 eV Core-core repulsion = 23051.491914 eV Total energy + Delta-G solvation = -4029.870946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54666 -39.80408 -39.33266 -38.33551 -37.18645 -37.01620 -35.36943 -33.50257 -32.82256 -32.39275 -29.86190 -28.27168 -26.02507 -25.63333 -24.49439 -22.52590 -21.53017 -21.09836 -20.60941 -19.52679 -18.89960 -18.57351 -18.37661 -17.21171 -17.14990 -17.07871 -16.77727 -16.53532 -16.32511 -16.06189 -15.62531 -15.11897 -14.51796 -14.45860 -14.19122 -14.04402 -14.00611 -13.48814 -13.30930 -13.27042 -13.21611 -13.02669 -12.94148 -12.84858 -12.69058 -12.67324 -12.31443 -12.04742 -11.89133 -11.77705 -11.63179 -11.34112 -11.03771 -10.67577 -10.67121 -10.44287 -10.34452 -10.29235 -8.07887 -6.16225 -0.75937 -0.57955 -0.22373 1.28992 1.41903 1.45296 1.54951 1.86349 1.95461 2.39050 2.46908 2.69305 3.23688 3.24949 3.63466 3.75328 3.81444 3.87650 4.00516 4.02724 4.15902 4.25366 4.43802 4.50089 4.65370 4.82322 4.85689 4.96816 4.97991 5.00749 5.08692 5.09124 5.19007 5.23126 5.46729 5.51463 5.56230 5.63574 5.73245 6.00103 6.05329 6.08723 6.44509 6.86043 6.95268 7.51084 9.00832 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003108 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.928876 B = 9007.738843 C = 9932.983215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.038 3.962 10 H 0.009 0.991 11 C -0.087 4.087 12 C -0.136 4.136 13 C 0.155 3.845 14 H 0.102 0.898 15 N -1.099 6.099 16 S 2.709 3.291 17 O -0.986 6.986 18 O -0.972 6.972 19 C -0.692 4.692 20 C 0.004 3.996 21 C -0.141 4.141 22 C 0.002 3.998 23 C -0.165 4.165 24 C 0.535 3.465 25 O -0.547 6.547 26 O -0.497 6.497 27 C 0.029 3.971 28 C -0.109 4.109 29 H 0.259 0.741 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.426 0.574 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.177 0.823 38 H 0.437 0.563 39 H 0.143 0.857 40 H 0.067 0.933 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 -20.263 -7.876 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.027 0.973 11 C -0.125 4.125 12 C -0.175 4.175 13 C 0.048 3.952 14 H 0.120 0.880 15 N -0.859 5.859 16 S 2.800 3.200 17 O -0.976 6.976 18 O -0.962 6.962 19 C -0.780 4.780 20 C -0.015 4.015 21 C -0.160 4.160 22 C -0.015 4.015 23 C -0.167 4.167 24 C 0.381 3.619 25 O -0.439 6.439 26 O -0.312 6.312 27 C 0.009 3.991 28 C -0.148 4.148 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.263 0.737 35 H 0.179 0.821 36 H 0.198 0.802 37 H 0.195 0.805 38 H 0.299 0.701 39 H 0.161 0.839 40 H 0.085 0.915 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.637 -20.562 -6.906 21.753 hybrid contribution 1.392 1.184 -0.480 1.889 sum 3.028 -19.378 -7.385 20.958 Atomic orbital electron populations 1.70089 1.07047 1.26936 1.51559 1.25695 0.95603 1.02143 0.95148 0.85670 0.79231 0.80355 0.77355 1.19185 1.20853 1.21086 1.21568 0.93028 0.91979 1.50098 0.92772 1.19440 0.92890 0.92290 0.93477 0.97286 1.21852 0.99158 0.93183 0.98352 1.22673 0.99819 0.95873 0.99166 1.21662 0.91443 0.88464 0.93656 0.88037 1.55379 1.35955 1.23914 1.70672 1.01250 0.72969 0.72104 0.73712 1.93561 1.59754 1.71658 1.72637 1.93578 1.35867 1.86459 1.80260 1.30798 1.01588 1.18964 1.26609 1.21667 0.95870 0.89904 0.94045 1.21792 1.00267 0.98821 0.95085 1.22169 0.89877 0.89002 1.00500 1.19252 0.94134 1.07991 0.95357 1.20739 0.86980 0.74187 0.80033 1.90920 1.36216 1.55095 1.61663 1.84471 1.46687 1.72618 1.27384 1.20994 0.96399 0.87821 0.93844 1.22730 0.97961 0.93987 1.00111 0.93249 0.94784 0.95325 0.91470 0.91253 0.73690 0.82096 0.80242 0.80528 0.70053 0.83893 0.91481 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.76 12.35 21.45 0.26 -51.50 16 2 C 0.01 0.70 5.33 84.65 0.45 1.15 16 3 Si 0.95 42.69 29.54 68.60 2.03 44.72 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.53 -27.76 8.40 25.60 0.22 -27.54 16 8 H 0.05 2.79 7.77 -2.91 -0.02 2.77 16 9 C 0.04 1.77 2.80 -10.46 -0.03 1.74 16 10 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 11 C -0.09 -3.86 5.40 31.32 0.17 -3.69 16 12 C -0.14 -4.72 6.54 31.32 0.20 -4.51 16 13 C 0.15 4.62 3.39 46.06 0.16 4.78 16 14 H 0.10 2.62 7.40 -2.39 -0.02 2.60 16 15 N -1.10 -27.95 5.53 -164.94 -0.91 -28.86 16 16 S 2.71 70.25 5.67 -56.49 -0.32 69.93 16 17 O -0.99 -30.22 17.27 -128.00 -2.21 -32.43 16 18 O -0.97 -29.13 17.02 -128.00 -2.18 -31.31 16 19 C -0.69 -15.34 5.85 22.23 0.13 -15.21 16 20 C 0.00 0.08 8.97 22.33 0.20 0.28 16 21 C -0.14 -1.79 10.03 22.23 0.22 -1.57 16 22 C 0.00 0.03 9.62 22.54 0.22 0.25 16 23 C -0.17 -3.17 5.87 -20.10 -0.12 -3.29 16 24 C 0.54 10.26 8.27 70.33 0.58 10.85 16 25 O -0.55 -14.46 17.13 19.93 0.34 -14.12 16 26 O -0.50 -5.33 12.68 -56.14 -0.71 -6.04 16 27 C 0.03 0.66 9.07 22.53 0.20 0.87 16 28 C -0.11 -3.86 5.92 31.89 0.19 -3.67 16 29 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.03 1.63 7.94 -2.39 -0.02 1.61 16 31 H 0.03 1.38 7.83 -2.39 -0.02 1.36 16 32 H 0.07 2.22 8.04 -2.39 -0.02 2.20 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.43 9.61 8.77 -96.74 -0.85 8.76 16 35 H 0.16 2.51 7.60 -2.91 -0.02 2.49 16 36 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.18 1.21 7.61 -2.91 -0.02 1.19 16 38 H 0.44 0.92 9.11 -74.06 -0.67 0.24 16 39 H 0.14 3.51 7.20 -2.91 -0.02 3.49 16 40 H 0.07 2.36 7.96 -2.38 -0.02 2.35 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -74.60 361.99 -1.34 -75.94 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -0.44 Total: 13.25 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 2.79 Total: -39.58 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -0.65 Total: -80.36 kcal Atomic # 8 Polarization: -79.14 SS G_CDS: -4.76 Total: -83.90 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 70.25 SS G_CDS: -0.32 Total: 69.93 kcal Total: -74.60 -1.34 -75.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414332566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.047 kcal (2) G-P(sol) polarization free energy of solvation -74.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds