Wall clock time and date at job start Tue Mar 31 2020 22:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48500 * 109.47020 * 269.99534 * 3 2 1 5 5 H 1.48497 * 109.47516 * 29.99746 * 3 2 1 6 6 H 1.48502 * 109.47178 * 149.99876 * 3 2 1 7 7 C 1.37876 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00086 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.53651 * 57.38643 * 9 7 2 11 11 C 1.54893 * 110.48468 * 294.77602 * 9 7 2 12 12 C 1.55012 * 102.75064 * 203.36538 * 11 9 7 13 13 C 1.54266 * 104.13935 * 37.95349 * 12 11 9 14 14 H 1.08998 * 110.02867 * 217.06658 * 13 12 11 15 15 N 1.46498 * 110.03070 * 95.68353 * 13 12 11 16 16 S 1.65599 * 120.00040 * 97.09800 * 15 13 12 17 17 O 1.42101 * 106.39962 * 311.45266 * 16 15 13 18 18 O 1.42098 * 106.40211 * 178.53869 * 16 15 13 19 19 C 1.76197 * 107.22094 * 64.99229 * 16 15 13 20 20 C 1.38371 * 119.84709 * 89.99940 * 19 16 15 21 21 C 1.37949 * 120.15267 * 179.97438 * 20 19 16 22 22 C 1.39624 * 119.84148 * 0.02562 * 21 20 19 23 23 C 1.47732 * 120.14478 * 180.02562 * 22 21 20 24 24 O 1.21473 * 119.99888 * 359.97438 * 23 22 21 25 25 O 1.34705 * 119.99951 * 180.27805 * 23 22 21 26 26 C 1.39629 * 119.70746 * 0.27432 * 22 21 20 27 27 C 1.37946 * 119.84232 * 359.42859 * 26 22 21 28 28 C 1.53874 * 106.63807 * 336.37351 * 13 12 11 29 29 H 0.97003 * 120.00057 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.75907 * 321.69609 * 11 9 7 31 31 H 1.09001 * 110.75366 * 84.87885 * 11 9 7 32 32 H 1.09006 * 110.50688 * 279.29503 * 12 11 9 33 33 H 1.09006 * 110.52048 * 156.61863 * 12 11 9 34 34 H 0.97001 * 120.00133 * 277.08651 * 15 13 12 35 35 H 1.08003 * 119.92466 * 359.97438 * 20 19 16 36 36 H 1.07998 * 120.07790 * 180.02562 * 21 20 19 37 37 H 0.96701 * 117.00269 * 179.72332 * 25 23 22 38 38 H 1.08002 * 120.07596 * 179.70560 * 26 22 21 39 39 H 1.07997 * 119.92168 * 180.29586 * 27 26 22 40 40 H 1.08996 * 110.03219 * 119.31123 * 28 13 12 41 41 H 1.08995 * 110.03114 * 240.69407 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5839 -2.5555 -0.8595 11 6 0.4530 -2.6643 1.3177 12 6 0.2745 -4.2008 1.4192 13 6 1.6121 -4.7704 0.9032 14 1 1.4338 -5.6792 0.3283 15 7 2.5037 -5.0566 2.0299 16 16 2.6027 -6.5937 2.6378 17 8 1.2660 -7.0369 2.8277 18 8 3.5630 -6.5503 3.6842 19 6 3.2894 -7.6113 1.3739 20 6 4.6609 -7.7753 1.2911 21 6 5.2053 -8.5710 0.3045 22 6 4.3689 -9.2111 -0.6122 23 6 4.9448 -10.0651 -1.6712 24 8 6.1483 -10.2114 -1.7461 25 8 4.1355 -10.6768 -2.5575 26 6 2.9863 -9.0362 -0.5268 27 6 2.4550 -8.2426 0.4686 28 6 2.2327 -3.6893 0.0012 29 1 -0.4850 0.8401 -0.0004 30 1 1.0235 -2.2847 2.1653 31 1 -0.5131 -2.1643 1.2492 32 1 -0.5501 -4.5320 0.7880 33 1 0.1071 -4.4984 2.4544 34 1 3.0361 -4.3456 2.4197 35 1 5.3066 -7.2793 2.0007 36 1 6.2759 -8.6985 0.2412 37 1 4.5586 -11.2221 -3.2348 38 1 2.3341 -9.5246 -1.2357 39 1 1.3854 -8.1103 0.5388 40 1 3.1973 -3.3775 0.4017 41 1 2.3556 -4.0733 -1.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414338638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:18 Heat of formation + Delta-G solvation = -148.286187 kcal Electronic energy + Delta-G solvation = -26986.870737 eV Core-core repulsion = 22958.157805 eV Total energy + Delta-G solvation = -4028.712932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88272 -39.08384 -37.94830 -37.17312 -36.58466 -35.87163 -33.60155 -32.14385 -31.68323 -31.55855 -28.19327 -26.81929 -25.59084 -23.88591 -23.32039 -21.89180 -20.00136 -19.71883 -19.21782 -18.69329 -18.21979 -17.63570 -17.17152 -16.59969 -16.11674 -15.98978 -15.39933 -15.11627 -14.77262 -14.49304 -14.35659 -14.19471 -13.99812 -13.40591 -13.24750 -12.94906 -12.62603 -12.35667 -12.12768 -12.06390 -12.05527 -11.71286 -11.67209 -11.52743 -11.30515 -11.03075 -10.95259 -10.80636 -10.55170 -10.31865 -10.03789 -9.91799 -9.63574 -9.51878 -9.29816 -9.09995 -8.83201 -8.38498 -6.03911 -4.06853 -0.21221 0.38589 0.84487 1.88850 2.45376 2.93791 3.20463 3.28332 3.35932 3.38213 3.70201 4.09430 4.33809 4.41445 4.42579 4.65222 4.81717 4.99398 5.09334 5.11733 5.26897 5.47179 5.50213 5.56235 5.57757 5.63045 5.73696 5.82110 5.95438 6.25930 6.29305 6.41082 6.60773 6.63704 6.70955 6.91723 7.13599 7.26280 7.31809 7.36113 7.68287 7.83470 7.99058 8.40153 8.95669 9.57494 11.05446 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.003004 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.727460 B = 9317.240551 C =10242.910269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.033 0.967 11 C -0.101 4.101 12 C -0.142 4.142 13 C 0.148 3.852 14 H 0.070 0.930 15 N -1.098 6.098 16 S 2.689 3.311 17 O -0.950 6.950 18 O -0.962 6.962 19 C -0.643 4.643 20 C -0.029 4.029 21 C -0.076 4.076 22 C -0.080 4.080 23 C 0.526 3.474 24 O -0.506 6.506 25 O -0.508 6.508 26 C -0.082 4.082 27 C -0.034 4.034 28 C -0.122 4.122 29 H 0.260 0.740 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.422 0.578 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.418 0.582 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.066 0.934 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 -19.563 -1.246 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.139 4.139 12 C -0.182 4.182 13 C 0.042 3.958 14 H 0.088 0.912 15 N -0.861 5.861 16 S 2.776 3.224 17 O -0.940 6.940 18 O -0.952 6.952 19 C -0.727 4.727 20 C -0.048 4.048 21 C -0.095 4.095 22 C -0.081 4.081 23 C 0.370 3.630 24 O -0.395 6.395 25 O -0.320 6.320 26 C -0.101 4.101 27 C -0.053 4.053 28 C -0.161 4.161 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.259 0.741 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.277 0.723 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.085 0.915 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.516 -19.681 -0.242 20.441 hybrid contribution 1.310 0.685 -1.111 1.849 sum 6.826 -18.996 -1.354 20.231 Atomic orbital electron populations 1.69951 1.05857 1.26478 1.50346 1.24976 0.94832 0.99011 0.95095 0.86658 0.79904 0.83752 0.78024 1.20803 1.21318 1.19970 1.21166 0.92670 0.90498 1.50980 0.92707 1.19472 0.92432 0.91133 0.94085 0.94893 1.22488 1.01462 0.90358 0.99611 1.22965 0.95176 0.99700 1.00319 1.21619 0.89993 0.98714 0.85502 0.91183 1.55573 1.56540 1.25666 1.48284 1.02157 0.73985 0.73050 0.73225 1.93608 1.35069 1.81314 1.84000 1.93588 1.62902 1.86423 1.52280 1.31561 1.03890 1.17191 1.20069 1.20939 0.93033 0.94660 0.96142 1.21399 1.00800 0.94549 0.92788 1.19359 0.94628 0.98789 0.95330 1.20868 0.84308 0.77430 0.80423 1.90917 1.16007 1.60228 1.72304 1.84553 1.43839 1.61299 1.42319 1.21610 0.93814 0.96860 0.97792 1.21049 1.00501 0.92474 0.91281 1.22646 1.00737 0.95940 0.96803 0.93060 0.93260 0.91343 0.91650 0.92100 0.74140 0.83011 0.83464 0.72302 0.83318 0.83005 0.91506 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 12.29 55.43 0.68 -23.92 16 2 C 0.06 1.67 5.35 -17.82 -0.10 1.58 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.29 8.46 -34.44 -0.29 -13.58 16 8 H 0.05 1.39 7.54 -52.49 -0.40 1.00 16 9 C 0.05 1.08 2.72 -90.11 -0.25 0.84 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.10 -2.17 5.75 -24.67 -0.14 -2.32 16 12 C -0.14 -2.47 6.55 -25.01 -0.16 -2.64 16 13 C 0.15 2.26 3.44 -66.81 -0.23 2.03 16 14 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 15 N -1.10 -14.82 5.41 -3.94 -0.02 -14.84 16 16 S 2.69 34.96 5.65 -107.50 -0.61 34.35 16 17 O -0.95 -14.48 17.03 -57.17 -0.97 -15.46 16 18 O -0.96 -14.31 17.27 -57.17 -0.99 -15.30 16 19 C -0.64 -7.17 5.85 -39.49 -0.23 -7.40 16 20 C -0.03 -0.29 9.50 -39.64 -0.38 -0.67 16 21 C -0.08 -0.75 9.60 -39.17 -0.38 -1.13 16 22 C -0.08 -0.78 5.87 -104.98 -0.62 -1.40 16 23 C 0.53 4.96 8.27 34.61 0.29 5.25 16 24 O -0.51 -6.05 17.13 -19.25 -0.33 -6.38 16 25 O -0.51 -3.24 12.68 -40.51 -0.51 -3.75 16 26 C -0.08 -0.74 9.62 -39.17 -0.38 -1.12 16 27 C -0.03 -0.34 8.90 -39.64 -0.35 -0.70 16 28 C -0.12 -2.19 6.13 -25.61 -0.16 -2.34 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.05 1.09 8.05 -51.93 -0.42 0.67 16 31 H 0.07 1.63 7.55 -51.93 -0.39 1.24 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 34 H 0.42 5.39 8.65 -34.47 -0.30 5.09 16 35 H 0.15 1.33 7.60 -52.48 -0.40 0.93 16 36 H 0.15 1.27 7.65 -52.49 -0.40 0.86 16 37 H 0.42 0.79 9.11 45.56 0.42 1.20 16 38 H 0.15 1.01 7.61 -52.49 -0.40 0.61 16 39 H 0.15 1.34 7.60 -52.49 -0.40 0.94 16 40 H 0.07 1.19 7.25 -51.93 -0.38 0.81 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -33.62 361.03 -9.96 -43.59 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.26 Total: 4.24 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -3.37 Total: -23.59 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.66 Total: -38.76 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -2.80 Total: -40.89 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 34.96 SS G_CDS: -0.61 Total: 34.35 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.62 -9.96 -43.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414338638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.700 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds