Wall clock time and date at job start Tue Mar 31 2020 22:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48500 * 109.47020 * 269.99534 * 3 2 1 5 5 H 1.48497 * 109.47516 * 29.99746 * 3 2 1 6 6 H 1.48502 * 109.47178 * 149.99876 * 3 2 1 7 7 C 1.37876 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00086 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.53651 * 57.38643 * 9 7 2 11 11 C 1.54893 * 110.48468 * 294.77602 * 9 7 2 12 12 C 1.55012 * 102.75064 * 203.36538 * 11 9 7 13 13 C 1.54266 * 104.13935 * 37.95349 * 12 11 9 14 14 H 1.08998 * 110.02867 * 217.06658 * 13 12 11 15 15 N 1.46498 * 110.03070 * 95.68353 * 13 12 11 16 16 S 1.65599 * 120.00040 * 97.09800 * 15 13 12 17 17 O 1.42101 * 106.39962 * 311.45266 * 16 15 13 18 18 O 1.42098 * 106.40211 * 178.53869 * 16 15 13 19 19 C 1.76197 * 107.22094 * 64.99229 * 16 15 13 20 20 C 1.38371 * 119.84709 * 89.99940 * 19 16 15 21 21 C 1.37949 * 120.15267 * 179.97438 * 20 19 16 22 22 C 1.39624 * 119.84148 * 0.02562 * 21 20 19 23 23 C 1.47732 * 120.14478 * 180.02562 * 22 21 20 24 24 O 1.21473 * 119.99888 * 359.97438 * 23 22 21 25 25 O 1.34705 * 119.99951 * 180.27805 * 23 22 21 26 26 C 1.39629 * 119.70746 * 0.27432 * 22 21 20 27 27 C 1.37946 * 119.84232 * 359.42859 * 26 22 21 28 28 C 1.53874 * 106.63807 * 336.37351 * 13 12 11 29 29 H 0.97003 * 120.00057 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.75907 * 321.69609 * 11 9 7 31 31 H 1.09001 * 110.75366 * 84.87885 * 11 9 7 32 32 H 1.09006 * 110.50688 * 279.29503 * 12 11 9 33 33 H 1.09006 * 110.52048 * 156.61863 * 12 11 9 34 34 H 0.97001 * 120.00133 * 277.08651 * 15 13 12 35 35 H 1.08003 * 119.92466 * 359.97438 * 20 19 16 36 36 H 1.07998 * 120.07790 * 180.02562 * 21 20 19 37 37 H 0.96701 * 117.00269 * 179.72332 * 25 23 22 38 38 H 1.08002 * 120.07596 * 179.70560 * 26 22 21 39 39 H 1.07997 * 119.92168 * 180.29586 * 27 26 22 40 40 H 1.08996 * 110.03219 * 119.31123 * 28 13 12 41 41 H 1.08995 * 110.03114 * 240.69407 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5839 -2.5555 -0.8595 11 6 0.4530 -2.6643 1.3177 12 6 0.2745 -4.2008 1.4192 13 6 1.6121 -4.7704 0.9032 14 1 1.4338 -5.6792 0.3283 15 7 2.5037 -5.0566 2.0299 16 16 2.6027 -6.5937 2.6378 17 8 1.2660 -7.0369 2.8277 18 8 3.5630 -6.5503 3.6842 19 6 3.2894 -7.6113 1.3739 20 6 4.6609 -7.7753 1.2911 21 6 5.2053 -8.5710 0.3045 22 6 4.3689 -9.2111 -0.6122 23 6 4.9448 -10.0651 -1.6712 24 8 6.1483 -10.2114 -1.7461 25 8 4.1355 -10.6768 -2.5575 26 6 2.9863 -9.0362 -0.5268 27 6 2.4550 -8.2426 0.4686 28 6 2.2327 -3.6893 0.0012 29 1 -0.4850 0.8401 -0.0004 30 1 1.0235 -2.2847 2.1653 31 1 -0.5131 -2.1643 1.2492 32 1 -0.5501 -4.5320 0.7880 33 1 0.1071 -4.4984 2.4544 34 1 3.0361 -4.3456 2.4197 35 1 5.3066 -7.2793 2.0007 36 1 6.2759 -8.6985 0.2412 37 1 4.5586 -11.2221 -3.2348 38 1 2.3341 -9.5246 -1.2357 39 1 1.3854 -8.1103 0.5388 40 1 3.1973 -3.3775 0.4017 41 1 2.3556 -4.0733 -1.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414338638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:17 Heat of formation + Delta-G solvation = -172.258635 kcal Electronic energy + Delta-G solvation = -26987.910260 eV Core-core repulsion = 22958.157805 eV Total energy + Delta-G solvation = -4029.752455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57353 -39.80996 -39.36932 -38.30701 -37.21995 -36.98150 -35.24029 -33.36874 -32.89345 -32.28290 -29.83334 -28.36449 -26.34022 -25.69625 -24.05495 -22.59901 -21.39862 -21.04578 -20.52320 -19.38797 -19.08544 -18.63803 -18.40185 -18.07140 -17.10746 -16.79628 -16.55846 -16.36428 -15.93834 -15.87679 -15.55256 -15.03541 -14.75199 -14.61419 -14.19244 -14.09554 -13.94294 -13.76591 -13.33728 -13.25685 -13.16575 -12.92178 -12.83099 -12.69201 -12.64212 -12.42507 -12.34241 -12.19970 -11.82889 -11.76785 -11.56690 -11.35149 -10.99153 -10.75005 -10.71217 -10.44872 -10.29516 -10.22542 -8.06887 -6.14992 -0.99930 -0.61705 0.12654 1.15918 1.42882 1.45134 1.53483 1.85913 1.97873 2.39541 2.47012 2.71912 3.21881 3.24807 3.57337 3.74929 3.86331 3.95868 4.08137 4.10407 4.20232 4.28724 4.43101 4.49458 4.78514 4.84673 4.85772 4.87914 4.92408 5.04161 5.09478 5.17939 5.21895 5.30644 5.44036 5.51439 5.54232 5.67873 5.73176 5.99529 6.08364 6.12140 6.45338 6.83235 6.97232 7.52175 9.01578 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.003004 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.727460 B = 9317.240551 C =10242.910269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.036 3.964 10 H 0.005 0.995 11 C -0.096 4.096 12 C -0.137 4.137 13 C 0.157 3.843 14 H 0.105 0.895 15 N -1.099 6.099 16 S 2.708 3.292 17 O -0.973 6.973 18 O -0.983 6.983 19 C -0.647 4.647 20 C -0.035 4.035 21 C -0.081 4.081 22 C -0.088 4.088 23 C 0.533 3.467 24 O -0.537 6.537 25 O -0.498 6.498 26 C -0.074 4.074 27 C -0.041 4.041 28 C -0.114 4.114 29 H 0.258 0.742 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.425 0.575 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.438 0.562 38 H 0.174 0.826 39 H 0.166 0.834 40 H 0.068 0.932 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 -21.257 -2.007 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.018 3.982 10 H 0.023 0.977 11 C -0.134 4.134 12 C -0.176 4.176 13 C 0.050 3.950 14 H 0.123 0.877 15 N -0.860 5.860 16 S 2.798 3.202 17 O -0.963 6.963 18 O -0.973 6.973 19 C -0.735 4.735 20 C -0.054 4.054 21 C -0.100 4.100 22 C -0.089 4.089 23 C 0.378 3.622 24 O -0.428 6.428 25 O -0.312 6.312 26 C -0.093 4.093 27 C -0.060 4.060 28 C -0.153 4.153 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.261 0.739 35 H 0.179 0.821 36 H 0.173 0.827 37 H 0.301 0.699 38 H 0.191 0.809 39 H 0.183 0.817 40 H 0.087 0.913 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.364 -21.372 -0.995 22.322 hybrid contribution 1.039 1.139 -0.948 1.810 sum 7.403 -20.232 -1.943 21.632 Atomic orbital electron populations 1.70081 1.07130 1.26912 1.51729 1.25714 0.95569 1.02194 0.95260 0.85734 0.78871 0.80074 0.78010 1.20430 1.21531 1.19199 1.21611 0.92984 0.92009 1.49829 0.92630 1.19471 0.93130 0.92234 0.93395 0.97723 1.22282 0.99237 0.93421 0.98506 1.22923 0.97122 0.96323 1.01240 1.21450 0.88604 0.99241 0.85661 0.87694 1.55488 1.56380 1.26305 1.47840 1.01350 0.73133 0.72581 0.73118 1.93577 1.36474 1.81539 1.84704 1.93559 1.63315 1.86667 1.53754 1.31191 1.04383 1.17814 1.20115 1.21103 0.92906 0.94868 0.96529 1.21544 1.01414 0.94383 0.92677 1.19566 0.95153 0.98752 0.95435 1.20784 0.83882 0.77075 0.80472 1.90912 1.17294 1.61442 1.73197 1.84506 1.43324 1.61089 1.42300 1.21852 0.93719 0.96115 0.97624 1.21303 1.01141 0.92421 0.91149 1.22487 0.99473 0.94754 0.98561 0.93346 0.94603 0.94622 0.90558 0.91451 0.73857 0.82067 0.82695 0.69934 0.80889 0.81662 0.91320 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 12.29 21.45 0.26 -52.02 16 2 C 0.01 0.61 5.35 84.65 0.45 1.06 16 3 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.53 -27.38 8.46 25.60 0.22 -27.17 16 8 H 0.06 2.81 7.54 -2.91 -0.02 2.79 16 9 C 0.04 1.67 2.72 -10.46 -0.03 1.65 16 10 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 11 C -0.10 -4.22 5.75 31.93 0.18 -4.03 16 12 C -0.14 -4.61 6.55 31.71 0.21 -4.40 16 13 C 0.16 4.46 3.44 45.72 0.16 4.62 16 14 H 0.11 2.31 7.30 -2.39 -0.02 2.29 16 15 N -1.10 -27.74 5.41 -166.38 -0.90 -28.64 16 16 S 2.71 65.79 5.65 -56.49 -0.32 65.47 16 17 O -0.97 -27.89 17.03 -128.00 -2.18 -30.07 16 18 O -0.98 -28.10 17.27 -128.00 -2.21 -30.31 16 19 C -0.65 -12.95 5.85 22.33 0.13 -12.82 16 20 C -0.03 -0.65 9.50 22.23 0.21 -0.44 16 21 C -0.08 -1.44 9.60 22.54 0.22 -1.22 16 22 C -0.09 -1.50 5.87 -20.10 -0.12 -1.61 16 23 C 0.53 8.80 8.27 70.33 0.58 9.38 16 24 O -0.54 -12.00 17.13 19.92 0.34 -11.65 16 25 O -0.50 -4.80 12.68 -56.15 -0.71 -5.51 16 26 C -0.07 -1.10 9.62 22.54 0.22 -0.88 16 27 C -0.04 -0.70 8.90 22.23 0.20 -0.51 16 28 C -0.11 -3.90 6.13 31.32 0.19 -3.71 16 29 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.04 1.62 8.05 -2.39 -0.02 1.60 16 31 H 0.03 1.76 7.55 -2.39 -0.02 1.74 16 32 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.07 2.19 8.04 -2.38 -0.02 2.17 16 34 H 0.42 10.32 8.65 -96.75 -0.84 9.48 16 35 H 0.16 2.57 7.60 -2.91 -0.02 2.55 16 36 H 0.16 2.43 7.65 -2.91 -0.02 2.41 16 37 H 0.44 0.33 9.11 -74.06 -0.67 -0.35 16 38 H 0.17 1.65 7.61 -2.91 -0.02 1.63 16 39 H 0.17 2.34 7.60 -2.91 -0.02 2.32 16 40 H 0.07 2.33 7.25 -2.39 -0.02 2.31 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -72.71 361.03 -1.29 -74.00 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -0.42 Total: 14.09 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 2.82 Total: -40.09 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -0.64 Total: -80.66 kcal Atomic # 8 Polarization: -72.78 SS G_CDS: -4.76 Total: -77.54 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 65.79 SS G_CDS: -0.32 Total: 65.47 kcal Total: -72.71 -1.29 -74.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414338638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.255 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds