Wall clock time and date at job start Tue Mar 31 2020 23:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47158 * 2 1 4 4 N 1.46497 * 109.47076 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00079 * 275.97289 * 4 3 2 6 6 H 1.07993 * 119.99992 * 146.59704 * 5 4 3 7 7 C 1.38812 * 119.99643 * 326.59207 * 5 4 3 8 8 N 1.31621 * 120.00527 * 336.11367 * 7 5 4 9 9 Si 1.86803 * 119.99690 * 156.11272 * 7 5 4 10 10 H 1.48502 * 109.47303 * 90.00135 * 9 7 5 11 11 H 1.48500 * 109.47063 * 209.99827 * 9 7 5 12 12 H 1.48497 * 109.46978 * 329.99999 * 9 7 5 13 13 S 1.65602 * 120.00150 * 95.97204 * 4 3 2 14 14 O 1.42095 * 106.40348 * 156.46011 * 13 4 3 15 15 O 1.42098 * 106.39961 * 23.53763 * 13 4 3 16 16 C 1.76201 * 107.21965 * 270.00077 * 13 4 3 17 17 C 1.38628 * 119.90637 * 89.99645 * 16 13 4 18 18 C 1.38035 * 120.70497 * 180.38752 * 17 16 13 19 19 C 1.38838 * 120.08423 * 359.46240 * 18 17 16 20 20 C 1.40408 * 119.17973 * 0.30132 * 19 18 17 21 21 C 1.37842 * 119.90336 * 269.97958 * 16 13 4 22 22 C 1.47354 * 119.02013 * 180.18772 * 20 19 18 23 23 O 1.21297 * 121.74132 * 168.03767 * 22 20 19 24 24 C 1.51845 * 116.51697 * 348.02113 * 22 20 19 25 25 C 1.53571 * 107.16650 * 40.00012 * 24 22 20 26 26 O 1.35328 * 120.00538 * 179.82507 * 19 18 17 27 27 H 1.08998 * 109.47222 * 60.00078 * 1 2 3 28 28 H 1.09004 * 109.47239 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46840 * 299.99572 * 1 2 3 30 30 H 1.09005 * 109.46891 * 239.99643 * 2 1 3 31 31 H 1.09005 * 109.47509 * 120.00118 * 2 1 3 32 32 H 1.08998 * 109.46930 * 59.99762 * 3 2 1 33 33 H 1.08998 * 109.46990 * 300.00064 * 3 2 1 34 34 H 0.96990 * 120.00273 * 180.02562 * 8 7 5 35 35 H 1.07995 * 119.64679 * 0.10238 * 17 16 13 36 36 H 1.07998 * 119.95417 * 179.74097 * 18 17 16 37 37 H 1.07996 * 120.20336 * 359.97438 * 21 16 13 38 38 H 1.08994 * 109.92038 * 159.42001 * 24 22 20 39 39 H 1.09005 * 109.91188 * 280.58976 * 24 22 20 40 40 H 1.08998 * 109.49503 * 61.24329 * 25 24 22 41 41 H 1.09001 * 109.49217 * 181.32886 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3189 1.1785 6 1 5.1363 0.7988 1.2013 7 6 3.6686 1.8623 2.3445 8 7 2.8131 2.8605 2.2802 9 14 4.1808 1.1768 4.0050 10 1 5.3774 1.9075 4.4945 11 1 3.0681 1.3439 4.9741 12 1 4.5041 -0.2659 3.8665 13 16 4.3324 1.5919 -1.4273 14 8 5.6155 2.1044 -1.0953 15 8 3.4504 2.2346 -2.3372 16 6 4.5929 -0.0349 -2.0520 17 6 3.6542 -0.6104 -2.8942 18 6 3.8377 -1.8868 -3.3868 19 6 4.9767 -2.6057 -3.0499 20 6 5.9295 -2.0203 -2.2007 21 6 5.7298 -0.7315 -1.7022 22 6 7.1390 -2.7848 -1.8488 23 8 8.0874 -2.2626 -1.3019 24 6 7.1360 -4.2606 -2.2061 25 6 6.4763 -4.3914 -3.5867 26 8 5.1533 -3.8582 -3.5308 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.4490 3.2404 3.0950 35 1 2.7676 -0.0560 -3.1641 36 1 3.0965 -2.3250 -4.0387 37 1 6.4616 -0.2831 -1.0467 38 1 8.1588 -4.6350 -2.2463 39 1 6.5635 -4.8205 -1.4665 40 1 7.0603 -3.8389 -4.3227 41 1 6.4330 -5.4428 -3.8710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414438021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:24 Heat of formation + Delta-G solvation = -137.744285 kcal Electronic energy + Delta-G solvation = -28305.053312 eV Core-core repulsion = 24276.797511 eV Total energy + Delta-G solvation = -4028.255801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.15163 -39.74174 -38.84980 -38.13846 -37.88343 -36.64140 -34.27511 -33.58531 -32.68413 -32.08473 -31.71488 -27.61104 -26.03266 -25.47118 -25.19093 -23.68783 -22.21679 -21.28210 -20.23156 -19.38432 -19.09525 -18.36016 -18.23816 -18.01507 -17.06098 -16.52649 -16.46543 -16.28382 -15.92053 -15.68934 -15.52517 -15.25998 -15.17811 -14.92177 -14.74958 -14.35098 -13.96634 -13.58814 -13.36885 -13.31442 -13.28488 -13.23106 -13.04063 -12.90567 -12.66216 -12.41589 -12.25344 -12.21003 -12.13063 -12.10871 -11.90635 -11.72620 -11.34628 -10.98425 -10.86246 -10.37990 -9.85572 -9.58638 -8.19963 -5.94297 -0.68670 -0.36068 -0.15941 1.02500 1.44646 1.46928 1.58098 1.85711 2.20924 2.38992 2.64880 2.71919 2.88531 3.15448 3.28791 3.50513 3.56697 3.66082 3.93916 4.02250 4.09536 4.20324 4.29877 4.42335 4.50536 4.59127 4.61105 4.64023 4.67405 4.73130 4.79327 4.85360 4.96446 5.08897 5.18483 5.26546 5.33245 5.37445 5.52053 5.70590 5.97789 6.03690 6.21318 6.49378 7.04810 7.42997 8.81373 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012182 B = 0.004676 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.936516 B = 5986.242343 C = 6630.198755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.852 5.852 5 C -0.309 4.309 6 H 0.081 0.919 7 C 0.003 3.997 8 N -0.886 5.886 9 Si 0.969 3.031 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.263 1.263 13 S 2.640 3.360 14 O -1.014 7.014 15 O -1.010 7.010 16 C -0.706 4.706 17 C 0.036 3.964 18 C -0.168 4.168 19 C 0.235 3.765 20 C -0.288 4.288 21 C 0.054 3.946 22 C 0.393 3.607 23 O -0.485 6.485 24 C -0.190 4.190 25 C 0.063 3.937 26 O -0.298 6.298 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.270 0.730 35 H 0.163 0.837 36 H 0.187 0.813 37 H 0.123 0.877 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 -19.152 -11.023 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C -0.017 4.017 4 N -0.683 5.683 5 C -0.444 4.444 6 H 0.099 0.901 7 C -0.202 4.202 8 N -0.526 5.526 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.196 1.196 12 H -0.187 1.187 13 S 2.741 3.259 14 O -1.004 7.004 15 O -1.000 7.000 16 C -0.795 4.795 17 C 0.017 3.983 18 C -0.187 4.187 19 C 0.187 3.813 20 C -0.291 4.291 21 C 0.034 3.966 22 C 0.272 3.728 23 O -0.362 6.362 24 C -0.227 4.227 25 C -0.011 4.011 26 O -0.210 6.210 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.180 0.820 36 H 0.204 0.796 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.177 -18.121 -11.226 21.317 hybrid contribution 0.707 0.077 1.241 1.430 sum 0.531 -18.045 -9.985 20.630 Atomic orbital electron populations 1.21660 0.93921 1.02330 1.01929 1.21883 0.96898 0.96890 1.01500 1.21555 0.79198 0.97234 1.03747 1.52658 1.12473 1.85916 1.17259 1.19149 1.06935 1.33176 0.85098 0.90145 1.25994 0.97697 0.94191 1.02303 1.70055 1.31865 1.20834 1.29801 0.85326 0.77974 0.79245 0.78208 1.20630 1.19636 1.18748 1.03832 0.72992 0.74883 0.74180 1.93393 1.44159 1.78575 1.84281 1.93379 1.66221 1.73965 1.66386 1.30741 1.05192 1.26579 1.16940 1.21199 0.95521 0.94086 0.87512 1.21021 0.99076 0.93381 1.05175 1.19339 0.92021 0.83191 0.86789 1.20867 1.01717 0.97866 1.08661 1.20820 0.93048 0.91675 0.91009 1.23202 0.83482 0.92440 0.73628 1.90578 1.36621 1.74888 1.34105 1.23124 1.07296 0.91456 1.00847 1.23552 0.79035 1.03453 0.95045 1.85797 1.32748 1.24765 1.77721 0.91934 0.90963 0.93386 0.92234 0.92934 0.88672 0.92269 0.91991 0.81960 0.79592 0.85932 0.84485 0.84992 0.90013 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.13 -4.76 6.22 30.59 0.19 -4.57 16 3 C 0.11 4.92 5.29 86.38 0.46 5.38 16 4 N -0.85 -42.78 2.85 -343.47 -0.98 -43.76 16 5 C -0.31 -16.70 8.87 84.03 0.75 -15.95 16 6 H 0.08 4.38 7.94 -2.91 -0.02 4.35 16 7 C 0.00 0.15 4.98 84.86 0.42 0.57 16 8 N -0.89 -48.49 11.27 21.65 0.24 -48.25 16 9 Si 0.97 42.01 29.62 68.60 2.03 44.04 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 13 S 2.64 127.47 5.65 -56.49 -0.32 127.15 16 14 O -1.01 -56.66 16.49 -128.00 -2.11 -58.77 16 15 O -1.01 -49.43 15.81 -128.00 -2.02 -51.45 16 16 C -0.71 -27.20 5.97 22.27 0.13 -27.06 16 17 C 0.04 1.07 8.50 22.31 0.19 1.26 16 18 C -0.17 -3.81 9.98 22.37 0.22 -3.59 16 19 C 0.24 5.54 6.56 22.94 0.15 5.69 16 20 C -0.29 -8.73 5.83 -20.02 -0.12 -8.85 16 21 C 0.05 2.09 9.12 22.51 0.21 2.29 16 22 C 0.39 10.65 6.98 28.45 0.20 10.85 16 23 O -0.48 -17.23 17.42 -3.08 -0.05 -17.28 16 24 C -0.19 -2.52 6.45 30.41 0.20 -2.32 16 25 C 0.06 0.57 6.98 72.17 0.50 1.08 16 26 O -0.30 -4.84 10.22 -86.16 -0.88 -5.72 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.06 1.92 7.11 -2.38 -0.02 1.90 16 31 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.10 4.77 5.31 -2.39 -0.01 4.75 16 33 H 0.06 2.60 6.90 -2.39 -0.02 2.58 16 34 H 0.27 13.85 8.31 -92.72 -0.77 13.07 16 35 H 0.16 4.32 7.59 -2.91 -0.02 4.30 16 36 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.12 5.32 7.37 -2.91 -0.02 5.30 16 38 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.17 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -77.15 356.01 1.18 -75.97 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.06 Total: 16.54 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 4.21 Total: -38.48 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -0.73 Total: -92.01 kcal Atomic # 8 Polarization: -128.16 SS G_CDS: -5.07 Total: -133.22 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 127.47 SS G_CDS: -0.32 Total: 127.15 kcal Total: -77.15 1.18 -75.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414438021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.771 kcal (2) G-P(sol) polarization free energy of solvation -77.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds