Wall clock time and date at job start Tue Mar 31 2020 22:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35694 * 117.00414 * 2 1 4 4 C 1.38609 * 120.15232 * 0.02562 * 3 2 1 5 5 C 1.38132 * 120.10556 * 179.97438 * 4 3 2 6 6 C 1.38570 * 120.43424 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.83813 * 180.02562 * 6 5 4 8 8 C 1.37750 * 120.32048 * 359.97438 * 6 5 4 9 9 C 1.39927 * 119.88473 * 0.27525 * 8 6 5 10 10 C 1.46939 * 120.21601 * 179.72535 * 9 8 6 11 11 C 1.34998 * 120.00001 * 44.83022 * 10 9 8 12 12 C 1.46244 * 120.00054 * 9.52211 * 11 10 9 13 13 O 1.21724 * 119.99597 * 7.07788 * 12 11 10 14 14 N 1.34773 * 119.99987 * 187.07663 * 12 11 10 15 15 S 1.65602 * 119.99801 * 179.97438 * 14 12 11 16 16 O 1.42106 * 104.27742 * 181.07230 * 15 14 12 17 17 O 1.42097 * 104.27789 * 308.93127 * 15 14 12 18 18 C 1.81399 * 104.44897 * 65.00260 * 15 14 12 19 19 C 1.50706 * 109.47178 * 179.97438 * 18 15 14 20 20 H 1.08001 * 119.99939 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00015 * 180.02562 * 19 18 15 22 22 N 1.31512 * 119.99756 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99868 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47201 * 89.99699 * 23 21 19 25 25 H 1.48499 * 109.47308 * 209.99611 * 23 21 19 26 26 H 1.48498 * 109.47267 * 330.00039 * 23 21 19 27 27 H 1.08997 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47055 * 299.99817 * 1 2 3 29 29 H 1.09006 * 109.47427 * 59.99897 * 1 2 3 30 30 H 1.08000 * 119.95218 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.78159 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47478 * 269.97909 * 7 6 5 33 33 H 1.09006 * 109.47291 * 29.97832 * 7 6 5 34 34 H 1.09005 * 109.47120 * 149.97650 * 7 6 5 35 35 H 1.08000 * 120.06016 * 180.02562 * 8 6 5 36 36 H 1.07998 * 119.99853 * 224.83169 * 10 9 8 37 37 H 1.07999 * 120.00325 * 189.51818 * 11 10 9 38 38 H 0.96998 * 120.00383 * 0.02562 * 14 12 11 39 39 H 1.08998 * 109.47293 * 299.99709 * 18 15 14 40 40 H 1.09000 * 109.47199 * 59.99599 * 18 15 14 41 41 H 0.97007 * 119.99409 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2933 2.3735 0.0005 5 6 1.9215 3.6037 0.0011 6 6 3.3048 3.6855 0.0005 7 6 3.9761 5.0347 0.0017 8 6 4.0692 2.5395 0.0000 9 6 3.4468 1.2863 -0.0058 10 6 4.2550 0.0593 -0.0125 11 6 5.3193 -0.0525 0.8104 12 6 5.5477 0.9498 1.8506 13 8 4.7132 1.8110 2.0597 14 7 6.6821 0.9199 2.5778 15 16 6.9409 2.0553 3.7552 16 8 8.2212 1.7306 4.2797 17 8 6.7098 3.2961 3.1025 18 6 5.6483 1.7333 4.9865 19 6 5.7810 2.7146 6.1225 20 1 6.5648 3.4574 6.1057 21 6 4.9023 2.6634 7.1838 22 7 3.9482 1.7586 7.2045 23 14 5.0672 3.8793 8.5922 24 1 4.2557 5.0882 8.3001 25 1 4.5845 3.2507 9.8480 26 1 6.4925 4.2659 8.7482 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2147 2.3190 0.0005 31 1 1.3307 4.5078 0.0011 32 1 4.1379 5.3610 -1.0256 33 1 3.3412 5.7560 0.5163 34 1 4.9349 4.9630 0.5154 35 1 5.1470 2.6082 0.0000 36 1 3.9977 -0.7532 -0.6758 37 1 6.0021 -0.8820 0.7007 38 1 7.3472 0.2339 2.4109 39 1 4.6685 1.8447 4.5222 40 1 5.7558 0.7183 5.3691 41 1 3.3298 1.7229 7.9511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493565784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:48 Heat of formation + Delta-G solvation = -99.232217 kcal Electronic energy + Delta-G solvation = -27737.487346 eV Core-core repulsion = 23710.901554 eV Total energy + Delta-G solvation = -4026.585792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44889 -39.46499 -37.50196 -36.19701 -35.12491 -34.23848 -33.87668 -33.31528 -31.57991 -29.82970 -29.01378 -27.83082 -25.83926 -24.61688 -23.48082 -22.24180 -21.07981 -19.71194 -18.98393 -18.20086 -17.25505 -17.09802 -16.41955 -16.22703 -15.77561 -15.61355 -15.00473 -14.84452 -14.53012 -14.29423 -14.22150 -13.97304 -13.74676 -13.63245 -13.36401 -12.68433 -12.50995 -12.20479 -12.09867 -12.05702 -11.82108 -11.76832 -11.43607 -11.32912 -11.25386 -11.14745 -10.94648 -10.88830 -10.72265 -10.62445 -10.35942 -10.02338 -9.81104 -9.69710 -9.11616 -8.68263 -8.17551 -7.78268 -6.30034 -4.41053 0.73934 1.11468 1.63905 1.89099 3.21271 3.23484 3.24609 3.27707 3.31928 3.34834 3.92189 4.24934 4.53843 4.68133 4.74866 4.86598 4.98413 5.02842 5.06126 5.11101 5.22744 5.25764 5.35366 5.39151 5.40731 5.53054 5.67799 5.76557 5.86298 6.02487 6.07199 6.17055 6.31215 6.45941 6.52678 6.65993 6.83259 6.84911 6.91827 7.14249 7.43353 7.44706 7.77109 7.94126 8.60159 9.25903 10.81751 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.004038 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.460199 B = 6932.823172 C = 7557.861408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.142 3.858 4 C -0.217 4.217 5 C -0.065 4.065 6 C -0.126 4.126 7 C -0.110 4.110 8 C 0.000 4.000 9 C -0.112 4.112 10 C 0.009 3.991 11 C -0.227 4.227 12 C 0.556 3.444 13 O -0.478 6.478 14 N -1.058 6.058 15 S 2.555 3.445 16 O -0.973 6.973 17 O -0.953 6.953 18 C -0.404 4.404 19 C -0.534 4.534 20 H 0.070 0.930 21 C 0.078 3.922 22 N -0.877 5.877 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.266 1.266 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.423 0.577 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 -4.668 -17.809 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.097 3.903 4 C -0.236 4.236 5 C -0.083 4.083 6 C -0.126 4.126 7 C -0.166 4.166 8 C -0.018 4.018 9 C -0.113 4.113 10 C -0.010 4.010 11 C -0.249 4.249 12 C 0.346 3.654 13 O -0.351 6.351 14 N -0.817 5.817 15 S 2.658 3.342 16 O -0.963 6.963 17 O -0.943 6.943 18 C -0.541 4.541 19 C -0.573 4.573 20 H 0.088 0.912 21 C -0.129 4.129 22 N -0.513 5.513 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.206 1.206 26 H -0.190 1.190 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.257 0.743 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.762 -3.655 -17.639 18.632 hybrid contribution -0.401 -0.253 1.038 1.141 sum -5.163 -3.908 -16.601 17.819 Atomic orbital electron populations 1.23031 0.78534 1.03713 1.01371 1.85966 1.21240 1.27126 1.88589 1.18970 0.91079 0.84100 0.96177 1.20992 0.99564 0.92248 1.10805 1.20867 0.93986 0.96801 0.96668 1.19642 0.93394 0.95647 1.03946 1.20718 1.01415 0.93160 1.01349 1.20850 0.99271 0.89985 0.91718 1.18140 0.89595 0.93715 1.09874 1.22245 0.90289 0.94484 0.93980 1.22957 1.01619 1.01710 0.98653 1.18347 0.80343 0.84670 0.82083 1.91096 1.42022 1.35393 1.66593 1.55422 1.27347 1.48001 1.50949 1.07013 0.77747 0.73773 0.75697 1.93515 1.39655 1.83824 1.79341 1.93513 1.86792 1.40765 1.73257 1.27593 1.11095 1.06598 1.08779 1.20286 1.17228 1.16182 1.03641 0.91208 1.24914 0.94191 0.95638 0.98161 1.69969 1.16250 1.33354 1.31692 0.86358 0.79195 0.80776 0.80542 1.19860 1.20605 1.19048 0.88412 0.92520 0.92830 0.85700 0.86088 0.92039 0.91792 0.90785 0.85904 0.84419 0.84327 0.74293 0.88309 0.89859 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.07 9.95 -18.78 -0.19 -4.26 16 3 C 0.14 2.06 6.70 -38.64 -0.26 1.80 16 4 C -0.22 -2.92 9.03 -39.48 -0.36 -3.28 16 5 C -0.07 -0.90 9.68 -39.50 -0.38 -1.28 16 6 C -0.13 -1.93 5.87 -104.68 -0.61 -2.54 16 7 C -0.11 -1.50 10.00 36.00 0.36 -1.14 16 8 C 0.00 0.00 6.21 -39.13 -0.24 -0.24 16 9 C -0.11 -1.69 4.54 -104.93 -0.48 -2.17 16 10 C 0.01 0.12 9.36 -37.21 -0.35 -0.23 16 11 C -0.23 -2.83 9.93 -37.52 -0.37 -3.20 16 12 C 0.56 9.44 6.55 -13.05 -0.09 9.36 16 13 O -0.48 -9.89 10.17 -11.95 -0.12 -10.02 16 14 N -1.06 -17.41 5.60 30.16 0.17 -17.24 16 15 S 2.56 56.32 5.03 -107.50 -0.54 55.78 16 16 O -0.97 -22.73 18.08 -57.54 -1.04 -23.77 16 17 O -0.95 -23.46 17.04 -64.79 -1.10 -24.57 16 18 C -0.40 -10.31 5.64 36.01 0.20 -10.11 16 19 C -0.53 -15.24 9.13 -34.44 -0.31 -15.55 16 20 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 21 C 0.08 2.20 5.46 -17.82 -0.10 2.10 16 22 N -0.88 -25.57 13.29 55.43 0.74 -24.83 16 23 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.12 1.96 7.04 -52.49 -0.37 1.59 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.42 5.08 8.77 -34.47 -0.30 4.78 16 39 H 0.10 2.66 7.19 -51.93 -0.37 2.29 16 40 H 0.08 2.07 8.14 -51.92 -0.42 1.65 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -37.21 363.34 -8.72 -45.93 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.09 Total: 6.32 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -2.00 Total: -25.25 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.91 Total: -42.07 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -2.45 Total: -62.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 56.32 SS G_CDS: -0.54 Total: 55.78 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.21 -8.72 -45.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493565784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.303 kcal (2) G-P(sol) polarization free energy of solvation -37.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds