Wall clock time and date at job start Tue Mar 31 2020 21:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47158 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.53989 * 291.62293 * 12 11 10 14 14 O 1.42103 * 110.54472 * 68.36761 * 12 11 10 15 15 N 1.65598 * 104.45114 * 179.97438 * 12 11 10 16 16 C 1.46533 * 124.95594 * 269.71824 * 15 12 11 17 17 C 1.53754 * 105.18136 * 179.89142 * 16 15 12 18 18 H 1.09001 * 110.32970 * 119.07601 * 17 16 15 19 19 C 1.50699 * 110.61671 * 241.49265 * 17 16 15 20 20 O 1.20828 * 119.99428 * 356.68381 * 19 17 16 21 21 O 1.34229 * 120.00091 * 176.68456 * 19 17 16 22 22 C 1.51218 * 104.53856 * 0.35708 * 17 16 15 23 23 C 1.38171 * 130.98636 * 179.75154 * 22 17 16 24 24 C 1.38226 * 120.15299 * 179.97438 * 23 22 17 25 25 C 1.38302 * 119.83456 * 0.02562 * 24 23 22 26 26 C 1.37828 * 120.22905 * 0.02562 * 25 24 23 27 27 C 1.38595 * 108.54044 * 359.77135 * 22 17 16 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 32 32 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 33 33 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 34 34 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 35 35 H 1.08996 * 110.30421 * 298.94763 * 16 15 12 36 36 H 1.09002 * 110.29860 * 61.09645 * 16 15 12 37 37 H 0.96704 * 116.99843 * 180.02562 * 21 19 17 38 38 H 1.08008 * 119.92239 * 359.97438 * 23 22 17 39 39 H 1.08006 * 120.08676 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.88816 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.85909 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 16 2.6587 -6.3659 -0.0239 13 8 3.3555 -6.4201 -1.2611 14 8 3.3556 -6.4324 1.2128 15 7 1.7083 -7.7220 -0.0299 16 6 1.2317 -8.4186 1.1679 17 6 0.3968 -9.5979 0.6425 18 1 0.8276 -10.5434 0.9719 19 6 -1.0330 -9.4835 1.1048 20 8 -1.3592 -8.5834 1.8419 21 8 -1.9439 -10.3815 0.6979 22 6 0.4758 -9.4780 -0.8629 23 6 -0.0725 -10.2567 -1.8640 24 6 0.1464 -9.9369 -3.1908 25 6 0.9166 -8.8349 -3.5150 26 6 1.4664 -8.0557 -2.5200 27 6 1.2494 -8.3718 -1.1769 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 2.8718 -3.6005 -0.9002 32 1 2.8717 -3.6084 0.8798 33 1 0.8531 -5.0490 0.8724 34 1 0.8537 -5.0406 -0.9075 35 1 2.0752 -8.7817 1.7550 36 1 0.6094 -7.7552 1.7686 37 1 -2.8482 -10.2666 1.0205 38 1 -0.6734 -11.1173 -1.6092 39 1 -0.2823 -10.5466 -3.9725 40 1 1.0877 -8.5840 -4.5514 41 1 2.0673 -7.1966 -2.7799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548561584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:30 Heat of formation + Delta-G solvation = -134.211144 kcal Electronic energy + Delta-G solvation = -27257.001737 eV Core-core repulsion = 23228.899145 eV Total energy + Delta-G solvation = -4028.102592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.47322 -39.85582 -37.29609 -36.87334 -36.26928 -35.99880 -34.74151 -32.89759 -32.22975 -29.83107 -29.52196 -27.88214 -25.02010 -23.81480 -23.26779 -22.22122 -21.09885 -20.57679 -19.32704 -18.50303 -17.88984 -17.45744 -16.82310 -16.65683 -16.47284 -15.86415 -15.69778 -15.34791 -14.86515 -14.60272 -14.46941 -14.33986 -13.95013 -13.47108 -13.09067 -12.94456 -12.90158 -12.65644 -12.35054 -12.24601 -12.13197 -12.01115 -11.97916 -11.88060 -11.72856 -11.35422 -11.14198 -10.94729 -10.94243 -10.91545 -10.77845 -10.42161 -10.00196 -9.45727 -9.17904 -9.09000 -8.42466 -8.18378 -6.07091 -4.10651 0.10058 1.01051 1.20145 1.82823 2.32575 2.61368 3.29596 3.35794 3.39675 3.51176 3.71247 3.81307 3.84710 4.16798 4.40780 4.54976 4.61917 4.82473 4.83200 4.98489 5.03435 5.07623 5.24377 5.26220 5.29182 5.31621 5.38810 5.55450 5.79372 5.82533 6.03674 6.11367 6.17463 6.21188 6.27651 6.36657 6.38691 6.77318 6.80851 7.49094 7.54400 7.63372 7.90291 8.29840 8.95368 9.54155 11.04069 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.002965 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.037374 B = 9442.421321 C = 9838.801272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.601 4.601 12 S 2.594 3.406 13 O -0.942 6.942 14 O -0.944 6.944 15 N -0.942 5.942 16 C 0.118 3.882 17 C -0.039 4.039 18 H 0.134 0.866 19 C 0.492 3.508 20 O -0.505 6.505 21 O -0.509 6.509 22 C -0.146 4.146 23 C -0.059 4.059 24 C -0.151 4.151 25 C -0.074 4.074 26 C -0.154 4.154 27 C 0.180 3.820 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.413 0.587 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.879 -25.739 -2.596 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.145 4.145 11 C -0.734 4.734 12 S 2.694 3.306 13 O -0.932 6.932 14 O -0.935 6.935 15 N -0.762 5.762 16 C -0.006 4.006 17 C -0.059 4.059 18 H 0.152 0.848 19 C 0.334 3.666 20 O -0.392 6.392 21 O -0.321 6.321 22 C -0.151 4.151 23 C -0.077 4.077 24 C -0.170 4.170 25 C -0.093 4.093 26 C -0.175 4.175 27 C 0.082 3.918 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.272 0.728 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.659 -25.333 -2.396 25.501 hybrid contribution -0.923 1.210 0.300 1.552 sum -2.583 -24.123 -2.096 24.352 Atomic orbital electron populations 1.69962 1.06103 1.26828 1.50412 1.25024 0.94891 0.99393 0.95046 0.86543 0.79874 0.83126 0.78200 1.20546 1.21149 1.19717 1.21233 0.93242 0.90801 1.51294 0.92323 1.19071 0.93485 0.90293 0.97905 1.21545 0.99459 0.91322 1.02129 1.30538 1.16032 1.14954 1.11853 1.05893 0.75591 0.74519 0.74595 1.93566 1.69747 1.85357 1.44572 1.93591 1.69543 1.85368 1.44955 1.56625 1.66401 1.42932 1.10261 1.21990 0.98710 0.93314 0.86626 1.20372 0.89239 1.02433 0.93893 0.84795 1.22959 0.88302 0.78522 0.76846 1.90763 1.80690 1.33256 1.34469 1.84487 1.23727 1.53369 1.70544 1.19547 1.04493 0.98672 0.92382 1.20442 0.97580 0.98311 0.91400 1.21033 1.01443 0.98768 0.95795 1.20978 0.95202 0.93942 0.99136 1.21103 1.03727 1.03603 0.89105 1.18063 0.94287 0.92213 0.87231 0.92853 0.95986 0.96017 0.91378 0.91384 0.84947 0.85045 0.87808 0.87387 0.72769 0.85163 0.85367 0.84965 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 10 C -0.10 -2.13 5.16 -26.74 -0.14 -2.26 16 11 C -0.60 -9.63 6.18 37.15 0.23 -9.40 16 12 S 2.59 39.58 5.56 -107.50 -0.60 38.98 16 13 O -0.94 -16.00 15.25 -57.54 -0.88 -16.88 16 14 O -0.94 -16.42 17.55 -57.54 -1.01 -17.43 16 15 N -0.94 -12.11 3.40 -58.12 -0.20 -12.31 16 16 C 0.12 1.26 6.68 -3.63 -0.02 1.23 16 17 C -0.04 -0.35 3.52 -92.28 -0.33 -0.67 16 18 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.49 4.62 7.66 36.01 0.28 4.90 16 20 O -0.50 -6.38 16.04 -18.75 -0.30 -6.68 16 21 O -0.51 -3.28 13.21 -39.25 -0.52 -3.80 16 22 C -0.15 -1.50 5.52 -104.26 -0.58 -2.08 16 23 C -0.06 -0.51 9.85 -39.61 -0.39 -0.90 16 24 C -0.15 -1.26 10.06 -39.56 -0.40 -1.65 16 25 C -0.07 -0.71 10.02 -39.71 -0.40 -1.11 16 26 C -0.15 -1.88 9.37 -39.20 -0.37 -2.25 16 27 C 0.18 2.24 6.59 -83.66 -0.55 1.68 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.13 1.96 8.14 -51.93 -0.42 1.53 16 34 H 0.13 1.92 8.14 -51.93 -0.42 1.50 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.20 6.48 -51.93 -0.34 0.86 16 37 H 0.41 1.09 9.10 45.56 0.41 1.51 16 38 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 39 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.15 1.95 6.11 -52.48 -0.32 1.63 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -36.68 362.37 -9.97 -46.65 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.43 Total: 0.82 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -3.21 Total: -25.47 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.54 Total: -38.23 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -2.71 Total: -44.78 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 39.58 SS G_CDS: -0.60 Total: 38.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.68 -9.97 -46.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548561584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.562 kcal (2) G-P(sol) polarization free energy of solvation -36.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds