Wall clock time and date at job start Tue Mar 31 2020 21:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47158 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.53989 * 291.62293 * 12 11 10 14 14 O 1.42103 * 110.54472 * 68.36761 * 12 11 10 15 15 N 1.65598 * 104.45114 * 179.97438 * 12 11 10 16 16 C 1.46533 * 124.95594 * 269.71824 * 15 12 11 17 17 C 1.53754 * 105.18136 * 179.89142 * 16 15 12 18 18 H 1.09001 * 110.32970 * 119.07601 * 17 16 15 19 19 C 1.50699 * 110.61671 * 241.49265 * 17 16 15 20 20 O 1.20828 * 119.99428 * 356.68381 * 19 17 16 21 21 O 1.34229 * 120.00091 * 176.68456 * 19 17 16 22 22 C 1.51218 * 104.53856 * 0.35708 * 17 16 15 23 23 C 1.38171 * 130.98636 * 179.75154 * 22 17 16 24 24 C 1.38226 * 120.15299 * 179.97438 * 23 22 17 25 25 C 1.38302 * 119.83456 * 0.02562 * 24 23 22 26 26 C 1.37828 * 120.22905 * 0.02562 * 25 24 23 27 27 C 1.38595 * 108.54044 * 359.77135 * 22 17 16 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 32 32 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 33 33 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 34 34 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 35 35 H 1.08996 * 110.30421 * 298.94763 * 16 15 12 36 36 H 1.09002 * 110.29860 * 61.09645 * 16 15 12 37 37 H 0.96704 * 116.99843 * 180.02562 * 21 19 17 38 38 H 1.08008 * 119.92239 * 359.97438 * 23 22 17 39 39 H 1.08006 * 120.08676 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.88816 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.85909 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 16 2.6587 -6.3659 -0.0239 13 8 3.3555 -6.4201 -1.2611 14 8 3.3556 -6.4324 1.2128 15 7 1.7083 -7.7220 -0.0299 16 6 1.2317 -8.4186 1.1679 17 6 0.3968 -9.5979 0.6425 18 1 0.8276 -10.5434 0.9719 19 6 -1.0330 -9.4835 1.1048 20 8 -1.3592 -8.5834 1.8419 21 8 -1.9439 -10.3815 0.6979 22 6 0.4758 -9.4780 -0.8629 23 6 -0.0725 -10.2567 -1.8640 24 6 0.1464 -9.9369 -3.1908 25 6 0.9166 -8.8349 -3.5150 26 6 1.4664 -8.0557 -2.5200 27 6 1.2494 -8.3718 -1.1769 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 2.8718 -3.6005 -0.9002 32 1 2.8717 -3.6084 0.8798 33 1 0.8531 -5.0490 0.8724 34 1 0.8537 -5.0406 -0.9075 35 1 2.0752 -8.7817 1.7550 36 1 0.6094 -7.7552 1.7686 37 1 -2.8482 -10.2666 1.0205 38 1 -0.6734 -11.1173 -1.6092 39 1 -0.2823 -10.5466 -3.9725 40 1 1.0877 -8.5840 -4.5514 41 1 2.0673 -7.1966 -2.7799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548561584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:30 Heat of formation + Delta-G solvation = -159.852993 kcal Electronic energy + Delta-G solvation = -27258.113651 eV Core-core repulsion = 23228.899145 eV Total energy + Delta-G solvation = -4029.214506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22926 -40.59404 -38.54063 -37.65280 -37.32778 -36.98161 -36.56147 -34.23780 -33.69671 -30.62313 -30.26527 -29.76308 -25.95690 -25.54605 -24.12860 -23.04328 -22.37821 -21.75008 -20.41062 -19.18254 -19.02394 -18.65435 -18.14484 -17.69710 -17.38122 -17.28465 -16.75274 -16.52516 -16.15171 -15.86670 -15.67203 -15.38766 -14.76658 -14.55150 -14.22652 -14.11634 -13.85905 -13.80709 -13.71787 -13.62221 -13.43532 -13.29391 -13.08923 -13.06360 -12.79551 -12.71088 -12.63735 -12.46265 -12.25101 -11.92248 -11.84264 -11.72509 -11.63591 -11.41897 -11.08028 -10.60992 -9.83130 -9.02560 -8.25459 -6.37414 -1.13506 0.27424 0.42627 1.12873 1.24082 1.38790 1.39940 1.51422 1.98555 2.37302 2.48192 2.76097 2.86259 2.95477 3.08086 3.30406 3.56545 3.70595 3.79951 3.96752 4.14051 4.23235 4.26227 4.35695 4.47809 4.51354 4.57266 4.57534 4.63836 4.78604 4.80865 4.97647 5.07630 5.27538 5.39938 5.44002 5.51617 5.55043 5.57233 5.63755 5.74621 6.04691 6.14384 6.77930 6.93295 7.32272 8.86277 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.002965 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.037374 B = 9442.421321 C = 9838.801272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.031 3.969 10 C -0.103 4.103 11 C -0.606 4.606 12 S 2.626 3.374 13 O -0.960 6.960 14 O -0.966 6.966 15 N -0.941 5.941 16 C 0.104 3.896 17 C -0.035 4.035 18 H 0.171 0.829 19 C 0.500 3.500 20 O -0.545 6.545 21 O -0.497 6.497 22 C -0.145 4.145 23 C -0.056 4.056 24 C -0.142 4.142 25 C -0.080 4.080 26 C -0.180 4.180 27 C 0.146 3.854 28 H 0.265 0.735 29 H 0.001 0.999 30 H 0.002 0.998 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.431 0.569 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -27.936 -3.223 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.591 4.591 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.143 4.143 11 C -0.737 4.737 12 S 2.725 3.275 13 O -0.951 6.951 14 O -0.956 6.956 15 N -0.764 5.764 16 C -0.019 4.019 17 C -0.055 4.055 18 H 0.188 0.812 19 C 0.343 3.657 20 O -0.435 6.435 21 O -0.311 6.311 22 C -0.150 4.150 23 C -0.074 4.074 24 C -0.161 4.161 25 C -0.098 4.098 26 C -0.202 4.202 27 C 0.050 3.950 28 H 0.074 0.926 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.293 0.707 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.169 0.831 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.885 -27.541 -3.038 27.772 hybrid contribution -0.969 1.740 0.424 2.036 sum -2.855 -25.801 -2.614 26.090 Atomic orbital electron populations 1.70086 1.07768 1.27981 1.51224 1.25981 0.95822 1.03408 0.94441 0.85429 0.78684 0.78221 0.78644 1.19576 1.20558 1.18729 1.21717 0.93816 0.92263 1.51293 0.91852 1.18959 0.93990 0.91939 0.95848 1.21338 0.98677 0.91705 1.02561 1.30514 1.16503 1.13830 1.12891 1.04695 0.74953 0.74309 0.73530 1.93540 1.70472 1.85768 1.45317 1.93555 1.70279 1.85876 1.45907 1.56243 1.66601 1.42022 1.11554 1.22252 0.99654 0.93957 0.86030 1.20438 0.88981 1.03062 0.92983 0.81177 1.23000 0.88754 0.78018 0.75966 1.90762 1.81335 1.34952 1.36464 1.84436 1.24670 1.52058 1.69902 1.19764 1.03812 0.97991 0.93392 1.20824 0.96951 0.98553 0.91062 1.21454 0.99947 0.97986 0.96681 1.21278 0.94959 0.94039 0.99527 1.21183 1.04898 1.04093 0.90005 1.18320 0.96164 0.93577 0.86976 0.92589 0.98090 0.97982 0.90903 0.91076 0.84044 0.84083 0.86214 0.88268 0.70702 0.82336 0.82126 0.83121 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.88 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.65 4.97 29.85 0.15 1.80 16 10 C -0.10 -4.34 5.16 30.59 0.16 -4.18 16 11 C -0.61 -20.14 6.18 71.98 0.44 -19.70 16 12 S 2.63 81.79 5.56 -56.49 -0.31 81.47 16 13 O -0.96 -33.46 15.25 -127.65 -1.95 -35.41 16 14 O -0.97 -33.96 17.55 -127.65 -2.24 -36.20 16 15 N -0.94 -24.12 3.40 -337.78 -1.15 -25.27 16 16 C 0.10 2.15 6.68 86.63 0.58 2.73 16 17 C -0.03 -0.54 3.52 -11.87 -0.04 -0.58 16 18 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16 19 C 0.50 8.39 7.66 71.24 0.55 8.94 16 20 O -0.54 -13.42 16.04 21.96 0.35 -13.07 16 21 O -0.50 -4.85 13.21 -51.41 -0.68 -5.53 16 22 C -0.14 -2.65 5.52 -19.63 -0.11 -2.76 16 23 C -0.06 -0.76 9.85 22.25 0.22 -0.54 16 24 C -0.14 -1.87 10.06 22.28 0.22 -1.65 16 25 C -0.08 -1.40 10.02 22.19 0.22 -1.18 16 26 C -0.18 -4.39 9.37 22.52 0.21 -4.18 16 27 C 0.15 3.55 6.59 38.34 0.25 3.80 16 28 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 29 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 30 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 32 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 34 H 0.14 4.34 8.14 -2.39 -0.02 4.32 16 35 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.10 2.22 6.48 -2.39 -0.02 2.20 16 37 H 0.43 1.06 9.10 -74.05 -0.67 0.38 16 38 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 39 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 40 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.13 3.55 6.11 -2.91 -0.02 3.53 16 Total: -1.00 -80.77 362.37 0.28 -80.49 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.39 Total: 11.95 kcal Atomic # 6 Polarization: -52.13 SS G_CDS: 3.55 Total: -48.58 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -0.86 Total: -81.73 kcal Atomic # 8 Polarization: -85.68 SS G_CDS: -4.52 Total: -90.20 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 81.79 SS G_CDS: -0.31 Total: 81.47 kcal Total: -80.77 0.28 -80.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548561584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.360 kcal (2) G-P(sol) polarization free energy of solvation -80.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds