Wall clock time and date at job start Tue Mar 31 2020 21:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 S 1.81402 * 109.47351 * 179.97438 * 11 10 9 13 13 O 1.42094 * 110.54588 * 291.62632 * 12 11 10 14 14 O 1.42107 * 110.53979 * 68.37511 * 12 11 10 15 15 N 1.65596 * 104.45128 * 179.97438 * 12 11 10 16 16 C 1.46539 * 124.95373 * 90.00028 * 15 12 11 17 17 C 1.53754 * 105.18426 * 179.97438 * 16 15 12 18 18 H 1.09003 * 110.42053 * 241.12069 * 17 16 15 19 19 C 1.50696 * 110.42051 * 118.76412 * 17 16 15 20 20 O 1.20821 * 120.00341 * 0.02562 * 19 17 16 21 21 O 1.34230 * 119.99755 * 179.97438 * 19 17 16 22 22 C 1.51224 * 104.53704 * 0.02562 * 17 16 15 23 23 C 1.38169 * 130.98653 * 180.02562 * 22 17 16 24 24 C 1.38221 * 120.15493 * 179.97438 * 23 22 17 25 25 C 1.38310 * 119.83115 * 0.02562 * 24 23 22 26 26 C 1.37831 * 120.23266 * 0.02562 * 25 24 23 27 27 C 1.38598 * 108.54022 * 359.77214 * 22 17 16 28 28 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 30 30 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 31 31 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 32 32 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 33 33 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 34 34 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 35 35 H 1.08992 * 110.29958 * 298.89007 * 16 15 12 36 36 H 1.08999 * 110.30116 * 60.93997 * 16 15 12 37 37 H 0.96706 * 116.99741 * 179.97438 * 21 19 17 38 38 H 1.07999 * 119.92356 * 359.97438 * 23 22 17 39 39 H 1.08001 * 120.08929 * 179.97438 * 24 23 22 40 40 H 1.08001 * 119.88196 * 179.97438 * 25 24 23 41 41 H 1.07993 * 119.86205 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 16 2.6590 -6.3659 0.0042 13 8 3.3500 -6.4279 -1.2359 14 8 3.3615 -6.4247 1.2381 15 7 1.7086 -7.7220 0.0110 16 6 1.2208 -8.4114 -1.1866 17 6 0.3936 -9.5959 -0.6606 18 1 0.8235 -10.5393 -0.9971 19 6 -1.0385 -9.4800 -1.1150 20 8 -1.3821 -8.5438 -1.7970 21 8 -1.9323 -10.4176 -0.7629 22 6 0.4800 -9.4805 0.8448 23 6 -0.0630 -10.2623 1.8463 24 6 0.1631 -9.9470 3.1729 25 6 0.9346 -8.8456 3.4965 26 6 1.4776 -8.0620 2.5011 27 6 1.2593 -8.3780 1.1582 28 1 -0.4850 0.8401 0.0004 29 1 0.6281 -2.5552 0.8979 30 1 0.6206 -2.5586 -0.8820 31 1 2.8678 -3.6059 -0.8902 32 1 2.8760 -3.6028 0.8897 33 1 0.8573 -5.0435 0.9006 34 1 0.8498 -5.0461 -0.8793 35 1 0.5929 -7.7446 -1.7773 36 1 2.0589 -8.7693 -1.7847 37 1 -2.8390 -10.3001 -1.0779 38 1 -0.6656 -11.1217 1.5919 39 1 -0.2622 -10.5586 3.9549 40 1 1.1115 -8.5983 4.5329 41 1 2.0794 -7.2037 2.7606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548561585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:33 Heat of formation + Delta-G solvation = -134.202227 kcal Electronic energy + Delta-G solvation = -27256.672618 eV Core-core repulsion = 23228.570412 eV Total energy + Delta-G solvation = -4028.102206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47780 -39.85648 -37.29582 -36.87445 -36.26886 -35.99869 -34.73963 -32.89744 -32.22826 -29.83361 -29.52888 -27.88069 -25.01904 -23.81516 -23.27115 -22.22915 -21.08772 -20.57520 -19.32747 -18.51628 -17.89109 -17.44982 -16.83308 -16.65780 -16.45962 -15.86365 -15.69974 -15.35038 -14.86468 -14.60429 -14.47016 -14.33854 -13.95599 -13.47251 -13.09309 -12.94258 -12.90372 -12.65466 -12.34915 -12.24776 -12.13122 -12.01193 -11.98367 -11.87842 -11.73135 -11.35283 -11.14297 -10.95564 -10.93568 -10.91315 -10.77683 -10.42020 -10.00062 -9.45593 -9.17838 -9.09437 -8.42332 -8.18474 -6.06974 -4.10547 0.10147 1.00637 1.19911 1.82807 2.32567 2.61458 3.29732 3.35848 3.39644 3.51056 3.71184 3.81052 3.84800 4.17139 4.40853 4.54669 4.61892 4.82183 4.83034 4.98390 5.03460 5.07788 5.24030 5.26259 5.29267 5.31676 5.38643 5.55070 5.79574 5.82376 6.03454 6.11311 6.17366 6.21155 6.27289 6.36833 6.38443 6.77046 6.80985 7.49026 7.54579 7.63543 7.90440 8.29986 8.95513 9.54255 11.04182 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.002964 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.945722 B = 9443.158561 C = 9844.588896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.601 4.601 12 S 2.594 3.406 13 O -0.944 6.944 14 O -0.942 6.942 15 N -0.942 5.942 16 C 0.117 3.883 17 C -0.039 4.039 18 H 0.134 0.866 19 C 0.492 3.508 20 O -0.504 6.504 21 O -0.510 6.510 22 C -0.146 4.146 23 C -0.060 4.060 24 C -0.151 4.151 25 C -0.074 4.074 26 C -0.154 4.154 27 C 0.181 3.819 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.413 0.587 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -25.782 2.474 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.734 4.734 12 S 2.694 3.306 13 O -0.935 6.935 14 O -0.933 6.933 15 N -0.762 5.762 16 C -0.007 4.007 17 C -0.059 4.059 18 H 0.152 0.848 19 C 0.333 3.667 20 O -0.391 6.391 21 O -0.322 6.322 22 C -0.151 4.151 23 C -0.078 4.078 24 C -0.170 4.170 25 C -0.092 4.092 26 C -0.175 4.175 27 C 0.083 3.917 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.272 0.728 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.628 -25.367 2.289 25.522 hybrid contribution -0.924 1.210 -0.314 1.554 sum -2.552 -24.157 1.975 24.372 Atomic orbital electron populations 1.69962 1.06102 1.26828 1.50412 1.25025 0.94889 0.99391 0.95046 0.86544 0.79862 0.83129 0.78214 1.20542 1.21149 1.19721 1.21231 0.93243 0.90803 1.51295 0.92323 1.19071 0.93483 0.90289 0.97907 1.21547 0.99460 0.91326 1.02125 1.30538 1.16026 1.14939 1.11867 1.05890 0.75589 0.74518 0.74593 1.93590 1.69784 1.85394 1.44693 1.93567 1.69521 1.85333 1.44834 1.56622 1.66395 1.42916 1.10256 1.21999 0.98658 0.93396 0.86652 1.20373 0.89215 1.02378 0.93930 0.84837 1.22967 0.88408 0.79104 0.76191 1.90761 1.79932 1.32371 1.36048 1.84488 1.24325 1.50569 1.72794 1.19538 1.04413 0.98802 0.92340 1.20441 0.97686 0.98273 0.91422 1.21032 1.01406 0.98801 0.95789 1.20982 0.95229 0.93892 0.99141 1.21106 1.03769 1.03551 0.89104 1.18059 0.94284 0.92140 0.87226 0.92852 0.96019 0.95983 0.91400 0.91369 0.85032 0.84946 0.87363 0.87837 0.72768 0.85176 0.85356 0.84953 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 10 C -0.10 -2.13 5.16 -26.73 -0.14 -2.26 16 11 C -0.60 -9.64 6.18 37.15 0.23 -9.41 16 12 S 2.59 39.62 5.56 -107.50 -0.60 39.03 16 13 O -0.94 -16.43 17.56 -57.54 -1.01 -17.44 16 14 O -0.94 -16.01 15.25 -57.54 -0.88 -16.89 16 15 N -0.94 -12.13 3.40 -58.11 -0.20 -12.33 16 16 C 0.12 1.25 6.68 -3.63 -0.02 1.23 16 17 C -0.04 -0.35 3.54 -92.28 -0.33 -0.67 16 18 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.49 4.63 7.64 36.00 0.28 4.90 16 20 O -0.50 -6.39 16.01 -18.75 -0.30 -6.69 16 21 O -0.51 -3.27 13.39 -39.26 -0.53 -3.80 16 22 C -0.15 -1.51 5.53 -104.26 -0.58 -2.08 16 23 C -0.06 -0.51 10.00 -39.61 -0.40 -0.91 16 24 C -0.15 -1.26 10.06 -39.56 -0.40 -1.66 16 25 C -0.07 -0.71 10.02 -39.70 -0.40 -1.11 16 26 C -0.15 -1.88 9.38 -39.19 -0.37 -2.25 16 27 C 0.18 2.25 6.59 -83.66 -0.55 1.70 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.13 1.93 8.14 -51.93 -0.42 1.51 16 34 H 0.13 1.96 8.14 -51.92 -0.42 1.54 16 35 H 0.11 1.20 6.46 -51.93 -0.34 0.86 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.41 1.08 9.10 45.56 0.41 1.50 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.15 1.95 6.11 -52.49 -0.32 1.63 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -36.70 362.66 -9.98 -46.68 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.43 Total: 0.83 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -3.22 Total: -25.50 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.54 Total: -38.27 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -2.71 Total: -44.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 39.62 SS G_CDS: -0.60 Total: 39.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.70 -9.98 -46.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548561585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.520 kcal (2) G-P(sol) polarization free energy of solvation -36.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds