Wall clock time and date at job start Tue Mar 31 2020 21:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48498 * 109.47312 * 239.99824 * 3 2 1 5 5 H 1.48504 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47243 * 119.99724 * 3 2 1 7 7 C 1.37875 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00201 * 359.72405 * 7 2 1 10 10 C 1.53007 * 109.47355 * 180.27399 * 9 7 2 11 11 S 1.81392 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54831 * 292.96557 * 11 10 9 13 13 O 1.42104 * 110.54535 * 69.72447 * 11 10 9 14 14 N 1.65602 * 104.44763 * 181.34285 * 11 10 9 15 15 C 1.46499 * 120.00282 * 63.41354 * 14 11 10 16 16 H 1.09006 * 110.26478 * 352.53999 * 15 14 11 17 17 C 1.54345 * 110.30420 * 114.60893 * 15 14 11 18 18 C 1.54355 * 102.38948 * 145.27543 * 17 15 14 19 19 H 1.09001 * 110.29933 * 92.67464 * 18 17 15 20 20 C 1.50700 * 110.30108 * 214.73081 * 18 17 15 21 21 O 1.20827 * 120.00420 * 0.02562 * 20 18 17 22 22 O 1.34225 * 119.99664 * 179.97438 * 20 18 17 23 23 C 1.51373 * 105.16764 * 333.65403 * 18 17 15 24 24 C 1.38493 * 130.39001 * 197.18686 * 23 18 17 25 25 C 1.38097 * 120.21772 * 180.02562 * 24 23 18 26 26 C 1.38252 * 119.93291 * 0.02562 * 25 24 23 27 27 C 1.38107 * 119.93864 * 359.97438 * 26 25 24 28 28 C 1.38215 * 109.76033 * 17.19177 * 23 18 17 29 29 H 0.96997 * 119.99595 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47093 * 300.27657 * 9 7 2 31 31 H 1.09004 * 109.47123 * 60.27527 * 9 7 2 32 32 H 1.09004 * 109.46943 * 300.00455 * 10 9 7 33 33 H 1.09004 * 109.46901 * 59.99991 * 10 9 7 34 34 H 0.96998 * 120.00108 * 243.41420 * 14 11 10 35 35 H 1.08997 * 110.82350 * 263.49900 * 17 15 14 36 36 H 1.09004 * 110.82303 * 27.05516 * 17 15 14 37 37 H 0.96702 * 116.99857 * 180.02562 * 22 20 18 38 38 H 1.08001 * 119.89353 * 359.97438 * 24 23 18 39 39 H 1.08002 * 120.03475 * 179.97438 * 25 24 23 40 40 H 1.08011 * 120.03847 * 180.02562 * 26 25 24 41 41 H 1.07992 * 119.89734 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0074 10 6 2.2453 -3.6621 0.0135 11 16 1.3382 -5.2330 0.0210 12 8 0.6389 -5.3992 1.2467 13 8 0.6899 -5.4404 -1.2264 14 7 2.5200 -6.3922 0.0647 15 6 3.4170 -6.4808 1.2196 16 1 3.2554 -5.6356 1.8888 17 6 3.1922 -7.8098 1.9716 18 6 4.6143 -8.1583 2.4603 19 1 4.7759 -7.7658 3.4643 20 6 4.8218 -9.6508 2.4434 21 8 3.9307 -10.3807 2.0786 22 8 5.9971 -10.1694 2.8327 23 6 5.5473 -7.4870 1.4752 24 6 6.8918 -7.7026 1.2227 25 6 7.5467 -6.9576 0.2619 26 6 6.8588 -5.9929 -0.4504 27 6 5.5180 -5.7763 -0.2001 28 6 4.8593 -6.5232 0.7624 29 1 -0.4849 0.8401 -0.0004 30 1 0.6244 -2.5522 0.8977 31 1 0.6243 -2.5615 -0.8823 32 1 2.8720 -3.6090 -0.8768 33 1 2.8719 -3.5997 0.9032 34 1 2.6183 -7.0127 -0.6744 35 1 2.5165 -7.6683 2.8150 36 1 2.8155 -8.5781 1.2964 37 1 6.0831 -11.1322 2.8042 38 1 7.4302 -8.4552 1.7796 39 1 8.5954 -7.1279 0.0676 40 1 7.3692 -5.4095 -1.2026 41 1 4.9812 -5.0229 -0.7572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562738302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:11 Heat of formation + Delta-G solvation = -145.555404 kcal Electronic energy + Delta-G solvation = -27230.081247 eV Core-core repulsion = 23201.486731 eV Total energy + Delta-G solvation = -4028.594516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29670 -39.76284 -36.91156 -36.57909 -36.17748 -35.46439 -33.92708 -33.77774 -31.21271 -30.94524 -29.32557 -27.45556 -25.63638 -23.38718 -22.90548 -21.73685 -21.28596 -20.49396 -19.12759 -18.43133 -17.73144 -17.40054 -16.95745 -16.45829 -16.15232 -15.56593 -15.44671 -15.31744 -15.01661 -14.58522 -14.54131 -14.05186 -13.58078 -13.50241 -13.38315 -12.98242 -12.81939 -12.54474 -12.25046 -11.95452 -11.80243 -11.78779 -11.61914 -11.57170 -11.50622 -11.40117 -11.09119 -11.05802 -10.98301 -10.87957 -10.45833 -10.40139 -9.91732 -9.60689 -9.13149 -9.03831 -8.91680 -8.51805 -6.14098 -4.19941 0.70535 1.00194 1.13988 1.86958 2.65734 3.05755 3.25783 3.30963 3.32417 3.52025 3.94790 4.03506 4.20166 4.35913 4.55667 4.64379 4.71843 4.74432 4.82076 4.93889 4.95386 5.06062 5.21084 5.27197 5.39688 5.43771 5.60612 5.62028 5.67015 5.75701 5.86681 6.00526 6.16027 6.18727 6.27489 6.31254 6.44484 6.70700 7.02201 7.27519 7.33563 7.53518 7.78425 8.15131 8.83216 9.44938 10.96886 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.003226 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.936973 B = 8676.284536 C = 9828.970823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.590 4.590 11 S 2.587 3.413 12 O -0.963 6.963 13 O -0.965 6.965 14 N -1.116 6.116 15 C 0.194 3.806 16 H 0.113 0.887 17 C -0.119 4.119 18 C -0.041 4.041 19 H 0.129 0.871 20 C 0.490 3.510 21 O -0.508 6.508 22 O -0.514 6.514 23 C -0.094 4.094 24 C -0.098 4.098 25 C -0.117 4.117 26 C -0.111 4.111 27 C -0.091 4.091 28 C -0.097 4.097 29 H 0.266 0.734 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.415 0.585 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.409 0.591 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.349 -18.044 4.061 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.723 4.723 11 S 2.685 3.315 12 O -0.953 6.953 13 O -0.955 6.955 14 N -0.871 5.871 15 C 0.086 3.914 16 H 0.130 0.870 17 C -0.158 4.158 18 C -0.060 4.060 19 H 0.147 0.853 20 C 0.332 3.668 21 O -0.395 6.395 22 O -0.326 6.326 23 C -0.095 4.095 24 C -0.116 4.116 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.110 4.110 28 C -0.099 4.099 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.249 0.751 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.268 0.732 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.891 -17.785 4.104 23.557 hybrid contribution 1.298 0.357 -0.308 1.381 sum 16.189 -17.428 3.797 24.088 Atomic orbital electron populations 1.69945 1.06116 1.27340 1.49403 1.25065 0.94966 0.99528 0.94887 0.86533 0.79499 0.82556 0.78699 1.20080 1.21085 1.20074 1.20953 0.93010 0.89745 1.52351 0.92074 1.18958 0.92647 0.90478 0.98939 1.30486 1.13735 1.18044 1.10067 1.05765 0.74771 0.76651 0.74315 1.93556 1.70151 1.85170 1.46376 1.93563 1.72545 1.84981 1.44409 1.55925 1.52122 1.50742 1.28306 1.20192 0.85107 0.99150 0.86981 0.86972 1.22873 0.93335 0.97566 1.02028 1.20619 0.96454 0.87241 1.01702 0.85301 1.23229 0.79162 0.91923 0.72525 1.90740 1.43359 1.61858 1.43551 1.84537 1.37796 1.30424 1.79841 1.19944 0.93992 0.97927 0.97618 1.20713 0.92809 0.99948 0.98086 1.21093 0.99968 0.96186 0.96273 1.21175 0.94167 0.97932 0.99660 1.20743 0.94398 0.98923 0.96901 1.20734 0.95629 0.96757 0.96810 0.92448 0.94745 0.94866 0.86034 0.86307 0.75098 0.88192 0.87958 0.73182 0.85347 0.85626 0.85421 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -10.69 5.97 37.16 0.22 -10.47 16 11 S 2.59 44.51 5.32 -107.50 -0.57 43.94 16 12 O -0.96 -19.20 17.84 -57.54 -1.03 -20.23 16 13 O -0.96 -19.63 18.08 -57.54 -1.04 -20.67 16 14 N -1.12 -14.05 5.29 -4.99 -0.03 -14.08 16 15 C 0.19 2.17 3.33 -68.05 -0.23 1.95 16 16 H 0.11 1.19 7.50 -51.93 -0.39 0.80 16 17 C -0.12 -1.24 6.04 -25.32 -0.15 -1.39 16 18 C -0.04 -0.36 3.37 -91.88 -0.31 -0.67 16 19 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 20 C 0.49 4.56 7.55 36.01 0.27 4.83 16 21 O -0.51 -6.33 16.25 -18.75 -0.30 -6.63 16 22 O -0.51 -3.27 12.26 -39.25 -0.48 -3.75 16 23 C -0.09 -0.90 5.60 -104.21 -0.58 -1.49 16 24 C -0.10 -0.84 9.63 -39.54 -0.38 -1.22 16 25 C -0.12 -0.96 10.05 -39.63 -0.40 -1.36 16 26 C -0.11 -1.00 10.05 -39.62 -0.40 -1.40 16 27 C -0.09 -0.95 10.00 -39.53 -0.40 -1.34 16 28 C -0.10 -1.03 5.79 -104.21 -0.60 -1.63 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 33 H 0.12 1.89 7.74 -51.92 -0.40 1.48 16 34 H 0.42 4.59 8.92 -34.47 -0.31 4.28 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.18 6.97 -51.93 -0.36 0.82 16 37 H 0.41 0.99 9.10 45.56 0.41 1.41 16 38 H 0.13 0.92 7.13 -52.49 -0.37 0.55 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -37.12 364.40 -10.09 -47.21 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.34 Total: 4.76 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -3.50 Total: -26.47 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.71 Total: -39.51 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.85 Total: -51.29 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 44.51 SS G_CDS: -0.57 Total: 43.94 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.12 -10.09 -47.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562738302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.348 kcal (2) G-P(sol) polarization free energy of solvation -37.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds