Wall clock time and date at job start Tue Mar 31 2020 21:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48498 * 109.47312 * 239.99824 * 3 2 1 5 5 H 1.48504 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47243 * 119.99724 * 3 2 1 7 7 C 1.37875 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00201 * 359.72405 * 7 2 1 10 10 C 1.53007 * 109.47355 * 180.27399 * 9 7 2 11 11 S 1.81392 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54831 * 292.96557 * 11 10 9 13 13 O 1.42104 * 110.54535 * 69.72447 * 11 10 9 14 14 N 1.65602 * 104.44763 * 181.34285 * 11 10 9 15 15 C 1.46499 * 120.00282 * 63.41354 * 14 11 10 16 16 H 1.09006 * 110.26478 * 352.53999 * 15 14 11 17 17 C 1.54345 * 110.30420 * 114.60893 * 15 14 11 18 18 C 1.54355 * 102.38948 * 145.27543 * 17 15 14 19 19 H 1.09001 * 110.29933 * 92.67464 * 18 17 15 20 20 C 1.50700 * 110.30108 * 214.73081 * 18 17 15 21 21 O 1.20827 * 120.00420 * 0.02562 * 20 18 17 22 22 O 1.34225 * 119.99664 * 179.97438 * 20 18 17 23 23 C 1.51373 * 105.16764 * 333.65403 * 18 17 15 24 24 C 1.38493 * 130.39001 * 197.18686 * 23 18 17 25 25 C 1.38097 * 120.21772 * 180.02562 * 24 23 18 26 26 C 1.38252 * 119.93291 * 0.02562 * 25 24 23 27 27 C 1.38107 * 119.93864 * 359.97438 * 26 25 24 28 28 C 1.38215 * 109.76033 * 17.19177 * 23 18 17 29 29 H 0.96997 * 119.99595 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47093 * 300.27657 * 9 7 2 31 31 H 1.09004 * 109.47123 * 60.27527 * 9 7 2 32 32 H 1.09004 * 109.46943 * 300.00455 * 10 9 7 33 33 H 1.09004 * 109.46901 * 59.99991 * 10 9 7 34 34 H 0.96998 * 120.00108 * 243.41420 * 14 11 10 35 35 H 1.08997 * 110.82350 * 263.49900 * 17 15 14 36 36 H 1.09004 * 110.82303 * 27.05516 * 17 15 14 37 37 H 0.96702 * 116.99857 * 180.02562 * 22 20 18 38 38 H 1.08001 * 119.89353 * 359.97438 * 24 23 18 39 39 H 1.08002 * 120.03475 * 179.97438 * 25 24 23 40 40 H 1.08011 * 120.03847 * 180.02562 * 26 25 24 41 41 H 1.07992 * 119.89734 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0074 10 6 2.2453 -3.6621 0.0135 11 16 1.3382 -5.2330 0.0210 12 8 0.6389 -5.3992 1.2467 13 8 0.6899 -5.4404 -1.2264 14 7 2.5200 -6.3922 0.0647 15 6 3.4170 -6.4808 1.2196 16 1 3.2554 -5.6356 1.8888 17 6 3.1922 -7.8098 1.9716 18 6 4.6143 -8.1583 2.4603 19 1 4.7759 -7.7658 3.4643 20 6 4.8218 -9.6508 2.4434 21 8 3.9307 -10.3807 2.0786 22 8 5.9971 -10.1694 2.8327 23 6 5.5473 -7.4870 1.4752 24 6 6.8918 -7.7026 1.2227 25 6 7.5467 -6.9576 0.2619 26 6 6.8588 -5.9929 -0.4504 27 6 5.5180 -5.7763 -0.2001 28 6 4.8593 -6.5232 0.7624 29 1 -0.4849 0.8401 -0.0004 30 1 0.6244 -2.5522 0.8977 31 1 0.6243 -2.5615 -0.8823 32 1 2.8720 -3.6090 -0.8768 33 1 2.8719 -3.5997 0.9032 34 1 2.6183 -7.0127 -0.6744 35 1 2.5165 -7.6683 2.8150 36 1 2.8155 -8.5781 1.2964 37 1 6.0831 -11.1322 2.8042 38 1 7.4302 -8.4552 1.7796 39 1 8.5954 -7.1279 0.0676 40 1 7.3692 -5.4095 -1.2026 41 1 4.9812 -5.0229 -0.7572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562738302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:10 Heat of formation + Delta-G solvation = -173.158919 kcal Electronic energy + Delta-G solvation = -27231.278225 eV Core-core repulsion = 23201.486731 eV Total energy + Delta-G solvation = -4029.791494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01569 -40.46983 -38.19328 -37.53057 -37.03688 -36.91147 -35.88033 -34.67119 -33.11864 -31.71609 -30.02742 -28.26893 -27.58118 -24.14463 -23.61426 -23.59005 -22.03249 -21.20556 -20.44996 -19.19319 -19.10800 -18.48217 -18.11429 -17.60119 -17.14240 -17.00127 -16.52268 -16.44246 -16.16175 -15.96648 -15.40276 -15.11079 -14.82441 -14.47501 -14.30078 -14.13233 -13.77988 -13.71980 -13.69371 -13.23028 -13.12550 -13.08370 -12.89479 -12.78576 -12.65837 -12.60798 -12.32477 -12.27482 -12.18160 -12.14351 -11.83732 -11.72956 -11.62810 -11.19878 -10.61894 -10.54348 -9.74628 -9.61775 -8.23991 -6.37760 -0.71574 0.30626 0.44419 1.17202 1.42563 1.45695 1.53742 1.79443 2.08629 2.39639 2.78139 2.83417 3.09713 3.16574 3.26770 3.34920 3.79699 3.90307 3.97542 3.99280 4.10832 4.15533 4.27139 4.30209 4.43958 4.63344 4.65793 4.72983 4.78898 4.92990 4.96945 5.13172 5.18402 5.28994 5.30645 5.52237 5.57962 5.60802 5.63184 5.70388 6.02643 6.06128 6.08231 6.75978 6.97695 7.32421 8.88090 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.003226 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.936973 B = 8676.284536 C = 9828.970823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.021 3.979 10 C -0.585 4.585 11 S 2.614 3.386 12 O -0.991 6.991 13 O -0.999 6.999 14 N -1.098 6.098 15 C 0.186 3.814 16 H 0.118 0.882 17 C -0.122 4.122 18 C -0.038 4.038 19 H 0.154 0.846 20 C 0.497 3.503 21 O -0.546 6.546 22 O -0.503 6.503 23 C -0.098 4.098 24 C -0.100 4.100 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.109 4.109 28 C -0.111 4.111 29 H 0.267 0.733 30 H 0.008 0.992 31 H 0.005 0.995 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.425 0.575 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.428 0.572 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.813 -18.409 4.584 27.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.018 4.018 10 C -0.718 4.718 11 S 2.712 3.288 12 O -0.981 6.981 13 O -0.989 6.989 14 N -0.857 5.857 15 C 0.078 3.922 16 H 0.135 0.865 17 C -0.161 4.161 18 C -0.057 4.057 19 H 0.171 0.829 20 C 0.341 3.659 21 O -0.436 6.436 22 O -0.317 6.317 23 C -0.099 4.099 24 C -0.118 4.118 25 C -0.133 4.133 26 C -0.135 4.135 27 C -0.127 4.127 28 C -0.113 4.113 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.261 0.739 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.290 0.710 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.393 -18.170 4.629 26.266 hybrid contribution 0.316 0.354 -0.454 0.656 sum 18.709 -17.816 4.176 26.170 Atomic orbital electron populations 1.70100 1.08088 1.28333 1.50938 1.26105 0.95811 1.03842 0.94463 0.85388 0.78138 0.77393 0.79487 1.18777 1.21213 1.18679 1.21487 0.94035 0.90668 1.51406 0.90413 1.18814 0.93573 0.92997 0.96403 1.30352 1.12759 1.16113 1.12562 1.04676 0.74720 0.76563 0.72879 1.93516 1.71472 1.85636 1.47492 1.93509 1.74026 1.85523 1.45839 1.55430 1.51570 1.49293 1.29381 1.20441 0.85420 0.99917 0.86383 0.86477 1.22834 0.94761 0.96640 1.01845 1.20616 0.95066 0.87236 1.02806 0.82864 1.23228 0.79232 0.91879 0.71593 1.90737 1.44731 1.62713 1.45442 1.84485 1.36057 1.32233 1.78911 1.20045 0.94540 0.97657 0.97615 1.20957 0.92429 1.00212 0.98184 1.21435 1.01169 0.95259 0.95390 1.21435 0.93737 0.98299 1.00069 1.20894 0.95270 0.99295 0.97231 1.20645 0.94979 0.97859 0.97802 0.92456 0.97337 0.97694 0.83725 0.83744 0.73927 0.87800 0.89328 0.71009 0.83737 0.83098 0.83823 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 13.29 21.45 0.28 -56.16 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.54 -29.03 9.11 25.60 0.23 -28.80 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.02 1.07 4.98 29.85 0.15 1.22 16 10 C -0.59 -21.05 5.97 71.98 0.43 -20.62 16 11 S 2.61 91.05 5.32 -56.49 -0.30 90.75 16 12 O -0.99 -40.32 17.84 -127.65 -2.28 -42.60 16 13 O -1.00 -41.58 18.08 -127.65 -2.31 -43.89 16 14 N -1.10 -27.13 5.29 -169.71 -0.90 -28.03 16 15 C 0.19 3.97 3.33 44.91 0.15 4.12 16 16 H 0.12 2.36 7.50 -2.38 -0.02 2.34 16 17 C -0.12 -2.44 6.04 31.51 0.19 -2.25 16 18 C -0.04 -0.60 3.37 -11.61 -0.04 -0.64 16 19 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 20 C 0.50 8.35 7.55 71.24 0.54 8.89 16 21 O -0.55 -13.16 16.25 21.96 0.36 -12.81 16 22 O -0.50 -5.01 12.26 -51.37 -0.63 -5.64 16 23 C -0.10 -1.65 5.60 -19.59 -0.11 -1.76 16 24 C -0.10 -1.42 9.63 22.30 0.21 -1.20 16 25 C -0.11 -1.50 10.05 22.24 0.22 -1.28 16 26 C -0.12 -1.81 10.05 22.24 0.22 -1.58 16 27 C -0.11 -2.05 10.00 22.30 0.22 -1.82 16 28 C -0.11 -2.16 5.79 -19.60 -0.11 -2.27 16 29 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.14 4.49 8.14 -2.39 -0.02 4.48 16 33 H 0.14 4.40 7.74 -2.39 -0.02 4.38 16 34 H 0.42 9.19 8.92 -96.75 -0.86 8.33 16 35 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.04 6.97 -2.39 -0.02 2.02 16 37 H 0.43 0.91 9.10 -74.06 -0.67 0.24 16 38 H 0.14 1.54 7.13 -2.91 -0.02 1.52 16 39 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -81.45 364.40 -1.42 -82.87 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -0.45 Total: 18.68 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 2.77 Total: -47.76 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -0.61 Total: -84.19 kcal Atomic # 8 Polarization: -100.08 SS G_CDS: -4.86 Total: -104.93 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 91.05 SS G_CDS: -0.30 Total: 90.75 kcal Total: -81.45 -1.42 -82.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562738302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.290 kcal (2) G-P(sol) polarization free energy of solvation -81.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds