Wall clock time and date at job start Tue Mar 31 2020 23:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99807 * 2 1 4 4 N 1.46497 * 109.47250 * 124.99728 * 3 2 1 5 5 C 1.46497 * 119.99688 * 274.99384 * 4 3 2 6 6 C 1.50696 * 109.47516 * 274.99957 * 5 4 3 7 7 H 1.08006 * 119.99946 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00083 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00155 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99841 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47144 * 90.00174 * 10 8 6 12 12 H 1.48496 * 109.47397 * 210.00034 * 10 8 6 13 13 H 1.48504 * 109.47380 * 330.00193 * 10 8 6 14 14 S 1.65600 * 120.00079 * 95.00006 * 4 3 2 15 15 O 1.42101 * 106.40195 * 156.45945 * 14 4 3 16 16 O 1.42090 * 106.40362 * 23.53768 * 14 4 3 17 17 C 1.76204 * 107.21743 * 269.99474 * 14 4 3 18 18 C 1.38233 * 119.99519 * 89.99974 * 17 14 4 19 19 C 1.38244 * 119.99937 * 179.97438 * 18 17 14 20 20 C 1.38232 * 119.99611 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99860 * 179.97438 * 20 19 18 22 22 C 1.50701 * 109.47064 * 89.99959 * 21 20 19 23 23 O 1.20826 * 119.99939 * 0.02562 * 22 21 20 24 24 O 1.34230 * 120.00046 * 179.97438 * 22 21 20 25 25 C 1.38234 * 120.00312 * 0.25696 * 20 19 18 26 26 C 1.38232 * 120.00206 * 270.02925 * 17 14 4 27 27 H 1.08002 * 119.99775 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00088 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00152 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47357 * 4.99200 * 3 2 1 31 31 H 1.09006 * 109.46848 * 244.99598 * 3 2 1 32 32 H 1.09000 * 109.47209 * 35.00555 * 5 4 3 33 33 H 1.09007 * 109.47338 * 155.00236 * 5 4 3 34 34 H 0.96999 * 120.00081 * 180.02562 * 9 8 6 35 35 H 1.07998 * 120.00275 * 0.02562 * 18 17 14 36 36 H 1.07998 * 119.99981 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47152 * 330.00052 * 21 20 19 38 38 H 1.09001 * 109.46980 * 210.00152 * 21 20 19 39 39 H 0.96691 * 117.00026 * 180.02562 * 24 22 21 40 40 H 1.07998 * 120.00015 * 179.72855 * 25 20 19 41 41 H 1.07993 * 120.00063 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5283 1.7624 2.4522 6 6 2.5990 3.2648 2.5448 7 1 2.9546 3.8416 1.7037 8 6 2.2086 3.9033 3.7028 9 7 1.7751 3.2011 4.7268 10 14 2.2956 5.7658 3.8173 11 1 1.0107 6.3505 3.3565 12 1 2.5436 6.1641 5.2262 13 1 3.4015 6.2634 2.9601 14 16 4.5712 0.8761 0.9174 15 8 5.3146 1.5049 1.9524 16 8 4.8567 1.0545 -0.4630 17 6 4.6595 -0.8569 1.2239 18 6 4.4747 -1.7523 0.1871 19 6 4.5445 -3.1119 0.4273 20 6 4.7984 -3.5759 1.7045 21 6 4.8739 -5.0580 1.9665 22 6 6.2940 -5.5286 1.7850 23 8 7.1564 -4.7411 1.4752 24 8 6.6010 -6.8223 1.9686 25 6 4.9773 -2.6805 2.7423 26 6 4.9128 -1.3209 2.5011 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1317 0.0894 31 1 2.6214 1.4026 -0.9314 32 1 1.4982 1.4374 2.5981 33 1 3.1611 1.3208 3.2221 34 1 1.5002 3.6503 5.5414 35 1 4.2768 -1.3898 -0.8108 36 1 4.4006 -3.8115 -0.3828 37 1 4.2245 -5.5843 1.2668 38 1 4.5506 -5.2635 2.9870 39 1 7.5251 -7.0766 1.8412 40 1 5.1714 -3.0432 3.7409 41 1 5.0571 -0.6213 3.3111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567739861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:09 Heat of formation + Delta-G solvation = -114.965655 kcal Electronic energy + Delta-G solvation = -27292.440024 eV Core-core repulsion = 23265.171979 eV Total energy + Delta-G solvation = -4027.268045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.72620 -39.13740 -36.72059 -36.45776 -36.34233 -35.19495 -33.39264 -33.19475 -31.89055 -31.06352 -28.54488 -27.48403 -24.93264 -23.31566 -22.91734 -22.27816 -21.13513 -19.80036 -18.54637 -18.45363 -17.57616 -16.91341 -16.61743 -16.50932 -16.34639 -15.73800 -15.44098 -15.18783 -14.49617 -14.39610 -14.31983 -13.68142 -13.57473 -13.54683 -13.04596 -12.83360 -12.74965 -12.41952 -12.19235 -12.09838 -11.85827 -11.72217 -11.46351 -11.29688 -11.19301 -11.11853 -10.96379 -10.91340 -10.68840 -10.59493 -10.40543 -10.01734 -9.77110 -9.23382 -9.12329 -9.00876 -8.44145 -8.11346 -6.06134 -4.09899 0.67508 1.06013 1.32408 1.86061 2.53857 2.66823 3.32257 3.38946 3.44141 3.47466 3.82630 4.17155 4.34871 4.45723 4.47666 4.72953 4.83945 4.98852 5.04522 5.10591 5.22749 5.29198 5.31365 5.44197 5.54641 5.64204 5.68448 5.92623 6.07975 6.09997 6.13269 6.18393 6.26984 6.29011 6.46341 6.82104 6.86672 6.98899 7.24065 7.38679 7.53163 7.58329 7.91257 8.19854 8.92392 9.55186 11.02474 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.003285 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.133071 B = 8521.775863 C = 8966.472890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.145 3.855 4 N -0.976 5.976 5 C 0.257 3.743 6 C -0.528 4.528 7 H 0.062 0.938 8 C 0.063 3.937 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.272 1.272 14 S 2.682 3.318 15 O -0.940 6.940 16 O -0.975 6.975 17 C -0.665 4.665 18 C -0.022 4.022 19 C -0.128 4.128 20 C -0.039 4.039 21 C -0.077 4.077 22 C 0.478 3.522 23 O -0.501 6.501 24 O -0.519 6.519 25 C -0.124 4.124 26 C -0.012 4.012 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.411 0.589 40 H 0.130 0.870 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -19.156 -6.746 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.019 3.981 4 N -0.814 5.814 5 C 0.135 3.865 6 C -0.568 4.568 7 H 0.080 0.920 8 C -0.139 4.139 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.196 1.196 14 S 2.770 3.230 15 O -0.930 6.930 16 O -0.965 6.965 17 C -0.749 4.749 18 C -0.041 4.041 19 C -0.147 4.147 20 C -0.039 4.039 21 C -0.114 4.114 22 C 0.319 3.681 23 O -0.388 6.388 24 O -0.332 6.332 25 C -0.143 4.143 26 C -0.031 4.031 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.271 0.729 40 H 0.148 0.852 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.442 -18.269 -6.792 19.643 hybrid contribution 0.323 -0.059 0.405 0.521 sum 2.765 -18.328 -6.387 19.605 Atomic orbital electron populations 1.23780 0.95798 1.01647 1.00680 1.23503 0.96662 0.99100 0.99775 1.20393 0.93289 0.95478 0.88970 1.57432 1.26989 1.78650 1.18339 1.19106 0.96321 0.95224 0.75829 1.21483 1.43623 0.91724 0.99927 0.92026 1.24914 0.94972 0.98650 0.95385 1.69917 1.43766 1.35603 1.04150 0.86523 0.78426 0.85264 0.77424 1.20653 1.21095 1.19639 1.02335 0.73678 0.73520 0.73424 1.93607 1.69060 1.72499 1.57822 1.93493 1.83915 1.85539 1.33580 1.31561 1.14512 1.28131 1.00681 1.20864 0.92517 0.92727 0.98025 1.21025 1.01885 0.95833 0.95966 1.19451 0.97219 0.92979 0.94300 1.20344 0.91051 0.93355 1.06653 1.23312 0.91950 0.79660 0.73185 1.90801 1.50262 1.55149 1.42561 1.84513 1.36845 1.28651 1.83179 1.21098 1.01113 0.93184 0.98903 1.21005 0.90700 0.96144 0.95273 0.88995 0.88205 0.87987 0.88825 0.89359 0.94353 0.94354 0.92705 0.84278 0.85435 0.86294 0.86186 0.72948 0.85217 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 14.32 29.01 0.42 -1.98 16 2 C -0.17 -2.48 9.84 -36.03 -0.35 -2.84 16 3 C 0.14 2.47 6.12 -5.20 -0.03 2.44 16 4 N -0.98 -19.84 2.75 -116.95 -0.32 -20.17 16 5 C 0.26 6.26 5.10 -5.20 -0.03 6.24 16 6 C -0.53 -14.49 9.38 -34.44 -0.32 -14.82 16 7 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 10 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 S 2.68 53.81 5.65 -107.50 -0.61 53.20 16 15 O -0.94 -22.30 16.25 -57.17 -0.93 -23.23 16 16 O -0.97 -19.99 15.83 -57.17 -0.91 -20.89 16 17 C -0.66 -11.11 5.97 -39.59 -0.24 -11.35 16 18 C -0.02 -0.32 8.89 -39.58 -0.35 -0.67 16 19 C -0.13 -1.53 9.70 -39.58 -0.38 -1.91 16 20 C -0.04 -0.45 4.37 -104.62 -0.46 -0.90 16 21 C -0.08 -0.58 5.94 -29.03 -0.17 -0.75 16 22 C 0.48 4.39 8.32 36.01 0.30 4.69 16 23 O -0.50 -6.75 16.79 -18.75 -0.31 -7.07 16 24 O -0.52 -3.33 13.42 -39.26 -0.53 -3.86 16 25 C -0.12 -1.61 9.70 -39.58 -0.38 -2.00 16 26 C -0.01 -0.19 9.52 -39.58 -0.38 -0.57 16 27 H 0.09 1.04 8.06 -52.49 -0.42 0.61 16 28 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 29 H 0.10 1.36 7.41 -52.48 -0.39 0.97 16 30 H 0.09 1.62 7.76 -51.93 -0.40 1.22 16 31 H 0.09 1.40 6.92 -51.93 -0.36 1.04 16 32 H 0.04 0.96 8.11 -51.93 -0.42 0.53 16 33 H 0.04 0.99 7.61 -51.92 -0.40 0.59 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.14 1.78 7.62 -52.49 -0.40 1.38 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.12 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.41 1.11 9.10 45.56 0.41 1.52 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.15 2.35 7.62 -52.49 -0.40 1.95 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -36.23 373.94 -9.15 -45.39 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.42 Total: 2.11 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -2.48 Total: -22.76 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.41 Total: -45.10 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -2.68 Total: -55.05 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 53.81 SS G_CDS: -0.61 Total: 53.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.23 -9.15 -45.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567739861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.579 kcal (2) G-P(sol) polarization free energy of solvation -36.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds