Wall clock time and date at job start Tue Mar 31 2020 23:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99807 * 2 1 4 4 N 1.46497 * 109.47250 * 124.99728 * 3 2 1 5 5 C 1.46497 * 119.99688 * 274.99384 * 4 3 2 6 6 C 1.50696 * 109.47516 * 274.99957 * 5 4 3 7 7 H 1.08006 * 119.99946 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00083 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00155 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99841 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47144 * 90.00174 * 10 8 6 12 12 H 1.48496 * 109.47397 * 210.00034 * 10 8 6 13 13 H 1.48504 * 109.47380 * 330.00193 * 10 8 6 14 14 S 1.65600 * 120.00079 * 95.00006 * 4 3 2 15 15 O 1.42101 * 106.40195 * 156.45945 * 14 4 3 16 16 O 1.42090 * 106.40362 * 23.53768 * 14 4 3 17 17 C 1.76204 * 107.21743 * 269.99474 * 14 4 3 18 18 C 1.38233 * 119.99519 * 89.99974 * 17 14 4 19 19 C 1.38244 * 119.99937 * 179.97438 * 18 17 14 20 20 C 1.38232 * 119.99611 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99860 * 179.97438 * 20 19 18 22 22 C 1.50701 * 109.47064 * 89.99959 * 21 20 19 23 23 O 1.20826 * 119.99939 * 0.02562 * 22 21 20 24 24 O 1.34230 * 120.00046 * 179.97438 * 22 21 20 25 25 C 1.38234 * 120.00312 * 0.25696 * 20 19 18 26 26 C 1.38232 * 120.00206 * 270.02925 * 17 14 4 27 27 H 1.08002 * 119.99775 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00088 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00152 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47357 * 4.99200 * 3 2 1 31 31 H 1.09006 * 109.46848 * 244.99598 * 3 2 1 32 32 H 1.09000 * 109.47209 * 35.00555 * 5 4 3 33 33 H 1.09007 * 109.47338 * 155.00236 * 5 4 3 34 34 H 0.96999 * 120.00081 * 180.02562 * 9 8 6 35 35 H 1.07998 * 120.00275 * 0.02562 * 18 17 14 36 36 H 1.07998 * 119.99981 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47152 * 330.00052 * 21 20 19 38 38 H 1.09001 * 109.46980 * 210.00152 * 21 20 19 39 39 H 0.96691 * 117.00026 * 180.02562 * 24 22 21 40 40 H 1.07998 * 120.00015 * 179.72855 * 25 20 19 41 41 H 1.07993 * 120.00063 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5283 1.7624 2.4522 6 6 2.5990 3.2648 2.5448 7 1 2.9546 3.8416 1.7037 8 6 2.2086 3.9033 3.7028 9 7 1.7751 3.2011 4.7268 10 14 2.2956 5.7658 3.8173 11 1 1.0107 6.3505 3.3565 12 1 2.5436 6.1641 5.2262 13 1 3.4015 6.2634 2.9601 14 16 4.5712 0.8761 0.9174 15 8 5.3146 1.5049 1.9524 16 8 4.8567 1.0545 -0.4630 17 6 4.6595 -0.8569 1.2239 18 6 4.4747 -1.7523 0.1871 19 6 4.5445 -3.1119 0.4273 20 6 4.7984 -3.5759 1.7045 21 6 4.8739 -5.0580 1.9665 22 6 6.2940 -5.5286 1.7850 23 8 7.1564 -4.7411 1.4752 24 8 6.6010 -6.8223 1.9686 25 6 4.9773 -2.6805 2.7423 26 6 4.9128 -1.3209 2.5011 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1317 0.0894 31 1 2.6214 1.4026 -0.9314 32 1 1.4982 1.4374 2.5981 33 1 3.1611 1.3208 3.2221 34 1 1.5002 3.6503 5.5414 35 1 4.2768 -1.3898 -0.8108 36 1 4.4006 -3.8115 -0.3828 37 1 4.2245 -5.5843 1.2668 38 1 4.5506 -5.2635 2.9870 39 1 7.5251 -7.0766 1.8412 40 1 5.1714 -3.0432 3.7409 41 1 5.0571 -0.6213 3.3111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567739861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:08 Heat of formation + Delta-G solvation = -140.686027 kcal Electronic energy + Delta-G solvation = -27293.555343 eV Core-core repulsion = 23265.171979 eV Total energy + Delta-G solvation = -4028.383364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45684 -40.09477 -38.35765 -37.91468 -37.10332 -36.88492 -35.00724 -34.27642 -33.52371 -32.10942 -29.42898 -29.31959 -26.54781 -24.33641 -24.08367 -23.93493 -21.93871 -20.99580 -19.95479 -19.12065 -19.08833 -18.36836 -18.24012 -17.52307 -17.50431 -17.06295 -16.45968 -16.43634 -16.09060 -15.72011 -15.52470 -15.13589 -14.63081 -14.56270 -14.38180 -14.21859 -13.91036 -13.64626 -13.40070 -13.30794 -13.23403 -13.12910 -13.08084 -12.95241 -12.53654 -12.47951 -12.37147 -12.31250 -12.18717 -12.01911 -11.73738 -11.69113 -11.66005 -10.58102 -10.31079 -10.26141 -10.06341 -9.80364 -8.19027 -6.30286 -0.61961 -0.28208 0.27737 1.21615 1.38998 1.40696 1.42028 1.52603 1.94663 2.24095 2.42450 2.63256 2.84739 3.12138 3.31082 3.42347 3.70691 3.89279 3.93847 4.17854 4.20441 4.27546 4.40550 4.41639 4.51263 4.53495 4.71349 4.80839 4.92300 4.95798 5.06093 5.08089 5.10529 5.22313 5.30412 5.44434 5.63124 5.68002 5.75248 5.80693 5.82741 6.02605 6.11703 6.77417 6.99277 7.38079 8.88710 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.003285 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.133071 B = 8521.775863 C = 8966.472890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.186 4.186 3 C 0.138 3.862 4 N -0.981 5.981 5 C 0.275 3.725 6 C -0.548 4.548 7 H 0.053 0.947 8 C 0.014 3.986 9 N -0.922 5.922 10 Si 0.955 3.045 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.275 1.275 14 S 2.686 3.314 15 O -0.991 6.991 16 O -0.987 6.987 17 C -0.675 4.675 18 C -0.031 4.031 19 C -0.123 4.123 20 C -0.029 4.029 21 C -0.075 4.075 22 C 0.486 3.514 23 O -0.553 6.553 24 O -0.509 6.509 25 C -0.128 4.128 26 C -0.040 4.040 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.030 0.970 33 H 0.017 0.983 34 H 0.267 0.733 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.428 0.572 40 H 0.155 0.845 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -22.209 -7.493 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C 0.013 3.987 4 N -0.819 5.819 5 C 0.152 3.848 6 C -0.588 4.588 7 H 0.071 0.929 8 C -0.185 4.185 9 N -0.562 5.562 10 Si 0.779 3.221 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.200 1.200 14 S 2.780 3.220 15 O -0.981 6.981 16 O -0.978 6.978 17 C -0.764 4.764 18 C -0.051 4.051 19 C -0.141 4.141 20 C -0.030 4.030 21 C -0.111 4.111 22 C 0.330 3.670 23 O -0.444 6.444 24 O -0.323 6.323 25 C -0.146 4.146 26 C -0.059 4.059 27 H 0.138 0.862 28 H 0.115 0.885 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.168 0.832 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.166 0.834 39 H 0.290 0.710 40 H 0.172 0.828 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.430 -21.293 -7.567 22.643 hybrid contribution 0.654 0.673 0.611 1.120 sum 2.084 -20.619 -6.956 21.861 Atomic orbital electron populations 1.24020 0.95355 1.02862 0.98183 1.23385 0.97097 0.98163 1.01955 1.20574 0.93009 0.97046 0.88053 1.57254 1.27397 1.79585 1.17642 1.18607 0.95225 0.93576 0.77374 1.21821 1.43579 0.93449 0.99903 0.92920 1.25701 0.94650 1.03061 0.95102 1.70004 1.44365 1.37266 1.04582 0.85611 0.78799 0.80128 0.77522 1.19007 1.20405 1.20013 1.01696 0.73024 0.74814 0.72443 1.93534 1.70403 1.75025 1.59173 1.93458 1.83975 1.86591 1.33741 1.30808 1.18145 1.25313 1.02173 1.21121 0.92506 0.93733 0.97698 1.21506 1.00010 0.95201 0.97412 1.19923 0.94302 0.95244 0.93495 1.20497 0.90752 0.90409 1.09484 1.23529 0.91980 0.79818 0.71697 1.90808 1.51841 1.56512 1.45252 1.84474 1.38444 1.27057 1.82350 1.21418 1.00350 0.91949 1.00918 1.21022 0.92628 0.97672 0.94597 0.86230 0.88497 0.86512 0.89797 0.88558 0.95179 0.96541 0.92382 0.83199 0.81453 0.82631 0.83399 0.70998 0.82767 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 14.32 67.78 0.97 -3.15 16 2 C -0.19 -5.28 9.84 25.64 0.25 -5.03 16 3 C 0.14 4.83 6.12 85.63 0.52 5.36 16 4 N -0.98 -41.84 2.75 -523.92 -1.44 -43.28 16 5 C 0.28 14.15 5.10 85.63 0.44 14.58 16 6 C -0.55 -31.32 9.38 25.60 0.24 -31.08 16 7 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.82 5.46 84.66 0.46 1.29 16 9 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 10 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 S 2.69 113.71 5.65 -56.49 -0.32 113.39 16 15 O -0.99 -50.62 16.25 -128.00 -2.08 -52.70 16 16 O -0.99 -41.97 15.83 -128.00 -2.03 -43.99 16 17 C -0.67 -23.07 5.97 22.27 0.13 -22.94 16 18 C -0.03 -0.85 8.89 22.27 0.20 -0.65 16 19 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 20 C -0.03 -0.57 4.37 -19.87 -0.09 -0.66 16 21 C -0.07 -0.76 5.94 29.10 0.17 -0.58 16 22 C 0.49 7.18 8.32 71.24 0.59 7.77 16 23 O -0.55 -13.75 16.79 21.97 0.37 -13.38 16 24 O -0.51 -4.57 13.42 -51.41 -0.69 -5.26 16 25 C -0.13 -3.14 9.70 22.27 0.22 -2.92 16 26 C -0.04 -1.30 9.52 22.27 0.21 -1.09 16 27 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.10 2.44 7.84 -2.91 -0.02 2.42 16 29 H 0.12 2.94 7.41 -2.91 -0.02 2.92 16 30 H 0.08 3.03 7.76 -2.39 -0.02 3.01 16 31 H 0.10 3.14 6.92 -2.38 -0.02 3.12 16 32 H 0.03 1.57 8.11 -2.39 -0.02 1.55 16 33 H 0.02 0.91 7.61 -2.38 -0.02 0.90 16 34 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.15 3.63 7.62 -2.91 -0.02 3.61 16 36 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.16 0.54 8.09 -2.39 -0.02 0.52 16 38 H 0.15 0.78 8.08 -2.39 -0.02 0.76 16 39 H 0.43 0.92 9.10 -74.06 -0.67 0.25 16 40 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.13 4.47 7.62 -2.91 -0.02 4.45 16 Total: -1.00 -82.27 373.94 1.04 -81.22 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.38 Total: 12.24 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 4.54 Total: -41.39 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -1.16 Total: -97.12 kcal Atomic # 8 Polarization: -110.90 SS G_CDS: -4.43 Total: -115.33 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 113.71 SS G_CDS: -0.32 Total: 113.39 kcal Total: -82.27 1.04 -81.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567739861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.462 kcal (2) G-P(sol) polarization free energy of solvation -82.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds