Wall clock time and date at job start Tue Mar 31 2020 22:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86792 * 120.00064 * 2 1 4 4 H 1.48502 * 109.47026 * 269.99770 * 3 2 1 5 5 H 1.48496 * 109.47235 * 29.99819 * 3 2 1 6 6 H 1.48507 * 109.47645 * 149.99821 * 3 2 1 7 7 C 1.39949 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00166 * 197.85673 * 7 2 1 9 9 C 1.41391 * 120.00028 * 17.85986 * 7 2 1 10 10 C 1.40719 * 120.24494 * 24.38606 * 9 7 2 11 11 C 1.37616 * 119.74911 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24634 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75068 * 179.97438 * 12 11 10 14 14 S 1.81403 * 109.46977 * 90.00002 * 13 12 11 15 15 O 1.42098 * 110.54564 * 68.37870 * 14 13 12 16 16 O 1.42106 * 110.54235 * 291.62183 * 14 13 12 17 17 N 1.65604 * 104.44608 * 180.02562 * 14 13 12 18 18 C 1.47421 * 125.64626 * 269.97143 * 17 14 13 19 19 C 1.54915 * 104.82972 * 155.89623 * 18 17 14 20 20 C 1.55149 * 101.58332 * 37.01127 * 19 18 17 21 21 C 1.47025 * 125.64910 * 89.99974 * 17 14 13 22 22 H 1.09000 * 110.01274 * 300.53051 * 21 17 14 23 23 C 1.50705 * 109.88025 * 61.61916 * 21 17 14 24 24 O 1.20819 * 120.00296 * 359.26178 * 23 21 17 25 25 O 1.34229 * 119.99691 * 179.26312 * 23 21 17 26 26 C 1.38637 * 120.50365 * 0.24856 * 12 11 10 27 27 C 1.37618 * 120.24551 * 359.45407 * 26 12 11 28 28 H 0.96994 * 120.00530 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.12745 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.88235 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47142 * 329.99791 * 13 12 11 32 32 H 1.08998 * 109.47116 * 210.00009 * 13 12 11 33 33 H 1.09003 * 110.36761 * 37.05978 * 18 17 14 34 34 H 1.09004 * 110.36936 * 274.72966 * 18 17 14 35 35 H 1.09000 * 111.00479 * 278.93622 * 19 18 17 36 36 H 1.09001 * 111.00311 * 155.08399 * 19 18 17 37 37 H 1.08998 * 110.72387 * 206.13784 * 20 19 18 38 38 H 1.08998 * 110.87624 * 82.93080 * 20 19 18 39 39 H 0.96697 * 116.99912 * 179.97438 * 25 23 21 40 40 H 1.07997 * 119.88210 * 179.69912 * 26 12 11 41 41 H 1.07997 * 120.13072 * 180.27082 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3521 -2.4071 -0.3745 10 6 0.2209 -2.3627 -1.2103 11 6 -0.4099 -3.5322 -1.5685 12 6 0.0649 -4.7508 -1.1086 13 6 -0.6348 -6.0246 -1.5074 14 16 0.0949 -6.6605 -3.0416 15 8 1.4229 -7.1114 -2.8128 16 8 -0.2096 -5.8016 -4.1320 17 7 -0.7572 -8.0439 -3.3620 18 6 -0.4088 -9.3963 -2.8899 19 6 -1.7472 -10.1763 -2.8984 20 6 -2.4332 -9.6039 -4.1668 21 6 -1.9861 -8.1268 -4.1649 22 1 -2.7637 -7.5045 -3.7220 23 6 -1.7085 -7.6735 -5.5751 24 8 -0.6007 -7.3025 -5.8834 25 8 -2.6920 -7.6818 -6.4885 26 6 1.1751 -4.8062 -0.2802 27 6 1.8253 -3.6499 0.0859 28 1 -0.4850 0.8399 -0.0004 29 1 -0.1514 -1.4143 -1.5686 30 1 -1.2780 -3.5006 -2.2102 31 1 -1.6943 -5.8230 -1.6652 32 1 -0.5198 -6.7653 -0.7161 33 1 -0.0018 -9.3523 -1.8796 34 1 0.3062 -9.8624 -3.5679 35 1 -2.3325 -9.9577 -2.0053 36 1 -1.5742 -11.2479 -2.9978 37 1 -3.5176 -9.6785 -4.0857 38 1 -2.0790 -10.1128 -5.0632 39 1 -2.4660 -7.3818 -7.3796 40 1 1.5335 -5.7607 0.0761 41 1 2.6926 -3.6956 0.7278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572880660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:01 Heat of formation + Delta-G solvation = -138.215440 kcal Electronic energy + Delta-G solvation = -27493.549111 eV Core-core repulsion = 23465.272880 eV Total energy + Delta-G solvation = -4028.276231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.52217 -38.17603 -37.78083 -36.59658 -35.98499 -35.31681 -34.17494 -31.50989 -31.14106 -30.07745 -29.44281 -27.84543 -24.37466 -24.04934 -21.87602 -21.43521 -21.15565 -20.27435 -18.72121 -18.17302 -17.60844 -17.44366 -17.05510 -15.85424 -15.78244 -15.43926 -15.33940 -14.86533 -14.51874 -13.99364 -13.93621 -13.77431 -13.57583 -13.46629 -12.87878 -12.68613 -12.17908 -12.15109 -12.07890 -11.75328 -11.68981 -11.58167 -11.53691 -11.49668 -11.43553 -11.27043 -11.17700 -11.15885 -10.82757 -10.73367 -10.49707 -10.21649 -9.82423 -9.53184 -9.31717 -9.14397 -7.61802 -7.45141 -6.92952 -4.49953 0.53332 2.25451 2.62608 2.73036 2.95740 3.00807 3.04380 3.09111 3.11324 3.82465 4.05529 4.11753 4.34498 4.48586 4.60729 4.65079 4.84187 5.06474 5.18615 5.21904 5.30109 5.36510 5.46194 5.51689 5.53471 5.54459 5.83010 5.90129 6.05063 6.19529 6.21174 6.28341 6.50494 6.83109 6.91232 7.09558 7.18162 7.45650 7.66252 7.89548 7.90552 7.90999 8.12315 8.47557 8.71869 8.79886 10.00322 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.002901 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.214558 B = 9650.292759 C =10202.820765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.448 4.448 8 H 0.084 0.916 9 C 0.118 3.882 10 C -0.166 4.166 11 C -0.080 4.080 12 C -0.237 4.237 13 C -0.522 4.522 14 S 2.584 3.416 15 O -0.954 6.954 16 O -0.937 6.937 17 N -1.002 6.002 18 C 0.117 3.883 19 C -0.131 4.131 20 C -0.114 4.114 21 C 0.164 3.836 22 H 0.113 0.887 23 C 0.453 3.547 24 O -0.472 6.472 25 O -0.521 6.521 26 C -0.068 4.068 27 C -0.225 4.225 28 H 0.284 0.716 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.409 0.591 40 H 0.095 0.905 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 -16.584 -5.446 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.477 4.477 8 H 0.102 0.898 9 C 0.114 3.886 10 C -0.186 4.186 11 C -0.100 4.100 12 C -0.243 4.243 13 C -0.652 4.652 14 S 2.685 3.315 15 O -0.945 6.945 16 O -0.928 6.928 17 N -0.837 5.837 18 C -0.008 4.008 19 C -0.170 4.170 20 C -0.153 4.153 21 C 0.054 3.946 22 H 0.131 0.869 23 C 0.290 3.710 24 O -0.356 6.356 25 O -0.333 6.333 26 C -0.087 4.087 27 C -0.245 4.245 28 H 0.096 0.904 29 H 0.141 0.859 30 H 0.113 0.887 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.268 0.732 40 H 0.113 0.887 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.177 -16.137 -5.706 18.969 hybrid contribution -0.021 0.986 -0.106 0.992 sum -8.198 -15.151 -5.812 18.181 Atomic orbital electron populations 1.69810 1.07761 1.29774 1.33170 1.26019 0.94818 1.01741 0.92026 0.86220 0.80484 0.79983 0.79590 1.19001 1.20140 1.18388 1.19764 0.98370 0.91163 1.38376 0.89820 1.17743 0.90810 0.92190 0.87826 1.21325 0.99354 0.96810 1.01085 1.20600 0.98375 0.92398 0.98598 1.18103 1.02929 0.90460 1.12801 1.29016 1.10331 1.06803 1.19063 1.06815 0.74799 0.72296 0.77577 1.93515 1.33970 1.79808 1.87185 1.93578 1.84394 1.65000 1.49806 1.59252 1.38937 1.22681 1.62791 1.22023 0.97063 0.81509 1.00159 1.22862 0.95916 1.00238 0.98005 1.22585 1.01954 0.91183 0.99544 1.20714 0.88467 1.00064 0.85311 0.86946 1.23834 0.82899 0.75603 0.88633 1.90812 1.24284 1.40589 1.79918 1.84460 1.43437 1.80656 1.24712 1.20471 0.94643 0.97175 0.96440 1.20986 1.03801 0.92585 1.07131 0.90449 0.85919 0.88745 0.86249 0.86237 0.89907 0.91188 0.89862 0.89453 0.88671 0.90132 0.73212 0.88663 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.56 10.95 55.55 0.61 -18.95 16 2 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.64 9.05 -37.74 -0.34 -11.99 16 8 H 0.08 2.08 7.91 -52.49 -0.41 1.66 16 9 C 0.12 3.13 5.58 -106.82 -0.60 2.54 16 10 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 11 C -0.08 -1.91 9.67 -39.66 -0.38 -2.29 16 12 C -0.24 -5.26 5.16 -104.33 -0.54 -5.80 16 13 C -0.52 -8.79 6.30 36.01 0.23 -8.56 16 14 S 2.58 47.58 5.38 -107.50 -0.58 47.00 16 15 O -0.95 -20.47 17.61 -57.54 -1.01 -21.48 16 16 O -0.94 -20.48 14.55 -66.99 -0.97 -21.45 16 17 N -1.00 -13.39 3.06 -105.63 -0.32 -13.71 16 18 C 0.12 1.18 6.89 -2.53 -0.02 1.16 16 19 C -0.13 -0.81 7.08 -24.58 -0.17 -0.99 16 20 C -0.11 -0.78 6.44 -24.90 -0.16 -0.94 16 21 C 0.16 1.79 3.57 -68.10 -0.24 1.54 16 22 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 23 C 0.45 6.14 6.96 36.01 0.25 6.39 16 24 O -0.47 -8.72 14.42 -26.61 -0.38 -9.10 16 25 O -0.52 -5.11 13.39 -39.25 -0.53 -5.64 16 26 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 27 C -0.22 -5.55 9.80 -38.87 -0.38 -5.94 16 28 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 29 H 0.12 3.26 6.15 -52.49 -0.32 2.94 16 30 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.12 1.69 8.08 -51.92 -0.42 1.27 16 32 H 0.12 1.66 8.08 -51.92 -0.42 1.24 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 39 H 0.41 2.58 9.10 45.56 0.41 2.99 16 40 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -36.15 358.76 -10.49 -46.64 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.51 Total: 7.92 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -3.17 Total: -29.78 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.29 Total: -32.66 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -2.90 Total: -57.67 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 47.58 SS G_CDS: -0.58 Total: 47.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.15 -10.49 -46.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572880660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.576 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds