Wall clock time and date at job start Tue Mar 31 2020 22:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86792 * 120.00064 * 2 1 4 4 H 1.48502 * 109.47026 * 269.99770 * 3 2 1 5 5 H 1.48496 * 109.47235 * 29.99819 * 3 2 1 6 6 H 1.48507 * 109.47645 * 149.99821 * 3 2 1 7 7 C 1.39949 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00166 * 197.85673 * 7 2 1 9 9 C 1.41391 * 120.00028 * 17.85986 * 7 2 1 10 10 C 1.40719 * 120.24494 * 24.38606 * 9 7 2 11 11 C 1.37616 * 119.74911 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24634 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75068 * 179.97438 * 12 11 10 14 14 S 1.81403 * 109.46977 * 90.00002 * 13 12 11 15 15 O 1.42098 * 110.54564 * 68.37870 * 14 13 12 16 16 O 1.42106 * 110.54235 * 291.62183 * 14 13 12 17 17 N 1.65604 * 104.44608 * 180.02562 * 14 13 12 18 18 C 1.47421 * 125.64626 * 269.97143 * 17 14 13 19 19 C 1.54915 * 104.82972 * 155.89623 * 18 17 14 20 20 C 1.55149 * 101.58332 * 37.01127 * 19 18 17 21 21 C 1.47025 * 125.64910 * 89.99974 * 17 14 13 22 22 H 1.09000 * 110.01274 * 300.53051 * 21 17 14 23 23 C 1.50705 * 109.88025 * 61.61916 * 21 17 14 24 24 O 1.20819 * 120.00296 * 359.26178 * 23 21 17 25 25 O 1.34229 * 119.99691 * 179.26312 * 23 21 17 26 26 C 1.38637 * 120.50365 * 0.24856 * 12 11 10 27 27 C 1.37618 * 120.24551 * 359.45407 * 26 12 11 28 28 H 0.96994 * 120.00530 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.12745 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.88235 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47142 * 329.99791 * 13 12 11 32 32 H 1.08998 * 109.47116 * 210.00009 * 13 12 11 33 33 H 1.09003 * 110.36761 * 37.05978 * 18 17 14 34 34 H 1.09004 * 110.36936 * 274.72966 * 18 17 14 35 35 H 1.09000 * 111.00479 * 278.93622 * 19 18 17 36 36 H 1.09001 * 111.00311 * 155.08399 * 19 18 17 37 37 H 1.08998 * 110.72387 * 206.13784 * 20 19 18 38 38 H 1.08998 * 110.87624 * 82.93080 * 20 19 18 39 39 H 0.96697 * 116.99912 * 179.97438 * 25 23 21 40 40 H 1.07997 * 119.88210 * 179.69912 * 26 12 11 41 41 H 1.07997 * 120.13072 * 180.27082 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3521 -2.4071 -0.3745 10 6 0.2209 -2.3627 -1.2103 11 6 -0.4099 -3.5322 -1.5685 12 6 0.0649 -4.7508 -1.1086 13 6 -0.6348 -6.0246 -1.5074 14 16 0.0949 -6.6605 -3.0416 15 8 1.4229 -7.1114 -2.8128 16 8 -0.2096 -5.8016 -4.1320 17 7 -0.7572 -8.0439 -3.3620 18 6 -0.4088 -9.3963 -2.8899 19 6 -1.7472 -10.1763 -2.8984 20 6 -2.4332 -9.6039 -4.1668 21 6 -1.9861 -8.1268 -4.1649 22 1 -2.7637 -7.5045 -3.7220 23 6 -1.7085 -7.6735 -5.5751 24 8 -0.6007 -7.3025 -5.8834 25 8 -2.6920 -7.6818 -6.4885 26 6 1.1751 -4.8062 -0.2802 27 6 1.8253 -3.6499 0.0859 28 1 -0.4850 0.8399 -0.0004 29 1 -0.1514 -1.4143 -1.5686 30 1 -1.2780 -3.5006 -2.2102 31 1 -1.6943 -5.8230 -1.6652 32 1 -0.5198 -6.7653 -0.7161 33 1 -0.0018 -9.3523 -1.8796 34 1 0.3062 -9.8624 -3.5679 35 1 -2.3325 -9.9577 -2.0053 36 1 -1.5742 -11.2479 -2.9978 37 1 -3.5176 -9.6785 -4.0857 38 1 -2.0790 -10.1128 -5.0632 39 1 -2.4660 -7.3818 -7.3796 40 1 1.5335 -5.7607 0.0761 41 1 2.6926 -3.6956 0.7278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572880660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:00 Heat of formation + Delta-G solvation = -164.194736 kcal Electronic energy + Delta-G solvation = -27494.675658 eV Core-core repulsion = 23465.272880 eV Total energy + Delta-G solvation = -4029.402778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48358 -39.62072 -38.98647 -38.11127 -37.05171 -36.82334 -35.98219 -33.24584 -31.93027 -31.31865 -30.84326 -29.57026 -26.04633 -25.00353 -23.06094 -22.70742 -22.23654 -21.98166 -19.87668 -19.33183 -19.12584 -18.88479 -18.03493 -17.35144 -17.08782 -16.96304 -16.38959 -16.11024 -15.95284 -15.70948 -15.53622 -14.79028 -14.59027 -14.39136 -14.21758 -13.94431 -13.70409 -13.60691 -13.49032 -13.26904 -13.16963 -13.05447 -12.82156 -12.79930 -12.67095 -12.58707 -12.38881 -12.32639 -12.07919 -11.90408 -11.75466 -11.61625 -11.40525 -11.36589 -11.06241 -10.22173 -9.51083 -9.30474 -8.74408 -6.43748 -0.86438 0.84738 1.03274 1.26414 1.36195 1.48840 1.49928 1.66249 2.11492 2.16227 2.60943 2.99428 3.07247 3.40039 3.61969 3.69765 3.78788 4.00948 4.03309 4.23016 4.33798 4.39414 4.46813 4.58663 4.61939 4.66452 4.88495 4.94084 4.95231 5.02173 5.05584 5.16599 5.21625 5.30864 5.34527 5.40918 5.57527 5.66394 5.79712 5.98760 6.00340 6.24366 6.57034 6.81531 6.89296 7.01145 8.22173 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.002901 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.214558 B = 9650.292759 C =10202.820765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.082 0.918 9 C 0.086 3.914 10 C -0.195 4.195 11 C -0.091 4.091 12 C -0.236 4.236 13 C -0.518 4.518 14 S 2.599 3.401 15 O -0.995 6.995 16 O -0.980 6.980 17 N -1.000 6.000 18 C 0.100 3.900 19 C -0.116 4.116 20 C -0.105 4.105 21 C 0.149 3.851 22 H 0.141 0.859 23 C 0.450 3.550 24 O -0.533 6.533 25 O -0.506 6.506 26 C -0.077 4.077 27 C -0.246 4.246 28 H 0.293 0.707 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.424 0.576 40 H 0.126 0.874 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.122 -18.985 -5.031 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.100 0.900 9 C 0.083 3.917 10 C -0.215 4.215 11 C -0.110 4.110 12 C -0.240 4.240 13 C -0.649 4.649 14 S 2.702 3.298 15 O -0.985 6.985 16 O -0.970 6.970 17 N -0.838 5.838 18 C -0.024 4.024 19 C -0.155 4.155 20 C -0.144 4.144 21 C 0.041 3.959 22 H 0.158 0.842 23 C 0.291 3.709 24 O -0.422 6.422 25 O -0.319 6.319 26 C -0.096 4.096 27 C -0.265 4.265 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.172 0.828 32 H 0.176 0.824 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.147 0.853 38 H 0.097 0.903 39 H 0.285 0.715 40 H 0.144 0.856 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.374 -18.531 -5.289 21.886 hybrid contribution 0.508 1.451 -0.360 1.579 sum -9.865 -17.080 -5.649 20.517 Atomic orbital electron populations 1.69847 1.09096 1.31094 1.33742 1.26857 0.95587 1.04771 0.90999 0.85138 0.79177 0.75487 0.79565 1.18868 1.18718 1.17960 1.19989 0.98644 0.92391 1.40775 0.90010 1.18095 0.91602 0.93356 0.88681 1.21335 1.00448 0.97225 1.02446 1.20921 0.98883 0.92562 0.98662 1.18542 1.02338 0.92110 1.11022 1.29024 1.11551 1.04995 1.19325 1.05660 0.74247 0.72708 0.77225 1.93464 1.36735 1.80681 1.87658 1.93533 1.84878 1.67039 1.51575 1.58695 1.39633 1.22363 1.63133 1.22410 0.99557 0.80145 1.00268 1.22892 0.93255 1.00847 0.98457 1.22691 1.03946 0.87807 0.99946 1.21314 0.87741 1.03505 0.83345 0.84174 1.24540 0.82311 0.74037 0.90033 1.90802 1.26694 1.43575 1.81105 1.84427 1.42033 1.79961 1.25462 1.20889 0.94605 0.97835 0.96257 1.21243 1.04592 0.92935 1.07771 0.89645 0.87501 0.86881 0.82842 0.82370 0.88907 0.92411 0.87697 0.87049 0.85281 0.90318 0.71525 0.85602 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.19 10.95 21.83 0.24 -41.95 16 2 C 0.03 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.99 38.11 29.59 68.60 2.03 40.14 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.49 -26.70 9.05 23.46 0.21 -26.49 16 8 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 9 C 0.09 4.77 5.58 -21.29 -0.12 4.65 16 10 C -0.19 -10.64 8.70 22.73 0.20 -10.44 16 11 C -0.09 -4.37 9.67 22.22 0.21 -4.16 16 12 C -0.24 -10.21 5.16 -19.67 -0.10 -10.31 16 13 C -0.52 -15.87 6.30 71.24 0.45 -15.42 16 14 S 2.60 92.82 5.38 -56.49 -0.30 92.51 16 15 O -0.99 -42.54 17.61 -127.65 -2.25 -44.79 16 16 O -0.98 -43.06 14.55 -118.62 -1.73 -44.78 16 17 N -1.00 -24.31 3.06 -488.10 -1.49 -25.80 16 18 C 0.10 1.72 6.89 86.86 0.60 2.32 16 19 C -0.12 -0.85 7.08 31.99 0.23 -0.62 16 20 C -0.11 -0.95 6.44 31.78 0.20 -0.75 16 21 C 0.15 2.77 3.57 44.60 0.16 2.93 16 22 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 23 C 0.45 11.57 6.96 71.24 0.50 12.07 16 24 O -0.53 -19.91 14.42 29.51 0.43 -19.48 16 25 O -0.51 -8.90 13.39 -51.40 -0.69 -9.58 16 26 C -0.08 -3.46 9.67 22.22 0.21 -3.25 16 27 C -0.25 -12.47 9.80 22.73 0.22 -12.25 16 28 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 29 H 0.11 6.03 6.15 -2.91 -0.02 6.01 16 30 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.15 3.70 8.08 -2.39 -0.02 3.68 16 32 H 0.16 3.66 8.08 -2.39 -0.02 3.64 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.08 0.77 7.84 -2.39 -0.02 0.76 16 39 H 0.42 4.75 9.10 -74.06 -0.67 4.08 16 40 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -85.12 358.76 0.04 -85.08 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.39 Total: 28.20 kcal Atomic # 6 Polarization: -62.95 SS G_CDS: 3.41 Total: -59.54 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -1.25 Total: -67.76 kcal Atomic # 8 Polarization: -114.40 SS G_CDS: -4.24 Total: -118.64 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: 92.82 SS G_CDS: -0.30 Total: 92.51 kcal Total: -85.12 0.04 -85.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572880660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.114 kcal (2) G-P(sol) polarization free energy of solvation -85.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds