Wall clock time and date at job start Tue Mar 31 2020 22:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48498 * 109.47039 * 239.99979 * 3 2 1 5 5 H 1.48496 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47162 * 120.00179 * 3 2 1 7 7 C 1.37875 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99615 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00583 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47467 * 179.97438 * 9 7 2 11 11 O 1.42100 * 110.53875 * 68.37482 * 10 9 7 12 12 O 1.42098 * 110.54462 * 291.62265 * 10 9 7 13 13 N 1.65600 * 104.44972 * 179.97438 * 10 9 7 14 14 C 1.47029 * 125.64731 * 90.00259 * 13 10 9 15 15 C 1.54315 * 107.27187 * 178.90536 * 14 13 10 16 16 H 1.08995 * 110.72344 * 96.34632 * 15 14 13 17 17 C 1.50706 * 110.72015 * 219.44641 * 15 14 13 18 18 C 1.38238 * 119.99727 * 238.54757 * 17 15 14 19 19 C 1.38234 * 119.99693 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.00240 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38234 * 120.00207 * 58.56248 * 17 15 14 23 23 C 1.55161 * 102.94235 * 337.80608 * 15 14 13 24 24 H 1.08999 * 111.00192 * 277.42778 * 23 15 14 25 25 C 1.50700 * 111.00415 * 153.57788 * 23 15 14 26 26 O 1.20831 * 119.99706 * 0.02562 * 25 23 15 27 27 O 1.34231 * 120.00147 * 180.02562 * 25 23 15 28 28 C 1.47424 * 125.65092 * 269.95725 * 13 10 9 29 29 H 0.97000 * 119.99609 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47465 * 59.99527 * 9 7 2 31 31 H 1.08998 * 109.47191 * 299.99459 * 9 7 2 32 32 H 1.09002 * 109.88146 * 59.48605 * 14 13 10 33 33 H 1.09005 * 110.00754 * 298.39840 * 14 13 10 34 34 H 1.07997 * 119.99846 * 359.97438 * 18 17 15 35 35 H 1.07999 * 119.99751 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 38 38 H 1.07999 * 120.00008 * 0.02562 * 22 17 15 39 39 H 0.96693 * 116.99680 * 179.97438 * 27 25 23 40 40 H 1.08993 * 110.36869 * 323.00692 * 28 13 10 41 41 H 1.09003 * 110.36065 * 85.22207 * 28 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.1264 -3.9383 1.2375 12 8 3.1264 -3.9384 -1.2364 13 7 1.4792 -5.2341 0.0013 14 6 0.9871 -5.9362 -1.1932 15 6 0.1699 -7.1513 -0.7062 16 1 -0.8938 -6.9152 -0.6801 17 6 0.4265 -8.3515 -1.5808 18 6 -0.6231 -8.9627 -2.2409 19 6 -0.3879 -10.0639 -3.0427 20 6 0.8970 -10.5536 -3.1849 21 6 1.9458 -9.9454 -2.5209 22 6 1.7113 -8.8413 -1.7228 23 6 0.7189 -7.3881 0.7256 24 1 1.6418 -7.9675 0.6992 25 6 -0.3127 -8.0586 1.5956 26 8 -1.3978 -8.3356 1.1419 27 8 -0.0263 -8.3482 2.8746 28 6 0.9872 -5.9379 1.1996 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5568 0.8903 32 1 1.8288 -6.2738 -1.7979 33 1 0.3515 -5.2731 -1.7802 34 1 -1.6270 -8.5803 -2.1294 35 1 -1.2080 -10.5416 -3.5580 36 1 1.0806 -11.4142 -3.8110 37 1 2.9490 -10.3306 -2.6285 38 1 2.5312 -8.3642 -1.2066 39 1 -0.7200 -8.7779 3.3934 40 1 1.7452 -5.9289 1.9828 41 1 0.0665 -5.4779 1.5583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574040587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:20 Heat of formation + Delta-G solvation = -139.086744 kcal Electronic energy + Delta-G solvation = -27466.779296 eV Core-core repulsion = 23438.465282 eV Total energy + Delta-G solvation = -4028.314014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90857 -39.48667 -37.79385 -36.25531 -36.23443 -35.08195 -33.38398 -32.69416 -31.03370 -30.58974 -29.05927 -28.23658 -24.31447 -23.66967 -23.15178 -22.68299 -21.48118 -19.96176 -18.52585 -18.29159 -17.42751 -17.35031 -16.73979 -16.35241 -15.92532 -15.49546 -15.30854 -15.22237 -14.88165 -14.49197 -14.18291 -13.68408 -13.55550 -13.51762 -13.23090 -13.06189 -12.81590 -12.52359 -12.15894 -12.06388 -11.88097 -11.67249 -11.48057 -11.45251 -11.35696 -11.24555 -11.17782 -10.96905 -10.90938 -10.81198 -10.66769 -10.61465 -9.89440 -9.47124 -9.03339 -8.86304 -8.74030 -8.56183 -6.36498 -4.48051 1.10200 1.22164 1.29377 2.01077 2.77772 3.21771 3.24118 3.28565 3.40205 3.58969 4.13703 4.21178 4.40679 4.53649 4.73870 4.78035 4.86266 4.92133 4.97738 5.00617 5.06338 5.15166 5.25077 5.28035 5.38285 5.49707 5.58244 5.74612 5.81967 5.86453 5.88786 6.00246 6.18511 6.29747 6.34228 6.38922 6.41037 6.52476 6.74269 6.77420 6.87343 7.39436 7.70379 7.71091 8.53857 9.20114 10.75080 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.003247 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.492805 B = 8622.057303 C = 9262.787549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.069 0.931 9 C -0.416 4.416 10 S 2.594 3.406 11 O -0.973 6.973 12 O -0.971 6.971 13 N -1.020 6.020 14 C 0.129 3.871 15 C -0.043 4.043 16 H 0.109 0.891 17 C -0.074 4.074 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.090 4.090 24 H 0.124 0.876 25 C 0.494 3.506 26 O -0.507 6.507 27 O -0.512 6.512 28 C 0.133 3.867 29 H 0.269 0.731 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.410 0.590 40 H 0.099 0.901 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -20.072 -0.774 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.552 4.552 10 S 2.696 3.304 11 O -0.964 6.964 12 O -0.962 6.962 13 N -0.855 5.855 14 C 0.003 3.997 15 C -0.063 4.063 16 H 0.127 0.873 17 C -0.074 4.074 18 C -0.119 4.119 19 C -0.140 4.140 20 C -0.141 4.141 21 C -0.137 4.137 22 C -0.133 4.133 23 C -0.110 4.110 24 H 0.142 0.858 25 C 0.335 3.665 26 O -0.394 6.394 27 O -0.324 6.324 28 C 0.007 3.993 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.269 0.731 40 H 0.117 0.883 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.663 -19.810 -1.139 19.913 hybrid contribution -0.836 0.691 0.326 1.133 sum -2.499 -19.119 -0.813 19.299 Atomic orbital electron populations 1.69943 1.06272 1.27866 1.47303 1.24925 0.95018 0.99611 0.93363 0.86425 0.79655 0.81363 0.79506 1.19373 1.20682 1.19372 1.20283 0.92728 0.88719 1.55953 0.91276 1.27738 1.10442 1.10206 1.06792 1.05805 0.76299 0.74553 0.73719 1.93473 1.71198 1.86098 1.45595 1.93479 1.71131 1.86054 1.45539 1.59063 1.70430 1.44859 1.11127 1.21762 0.97937 0.92342 0.87666 1.21209 1.01998 0.92638 0.90461 0.87267 1.19603 0.93608 0.96295 0.97936 1.21091 0.98823 0.95696 0.96268 1.21138 0.96964 0.96805 0.99065 1.21155 0.93049 1.00077 0.99820 1.21123 0.99119 0.96156 0.97350 1.21104 0.96468 0.96582 0.99120 1.22361 0.97814 0.97666 0.93182 0.85843 1.22989 0.87520 0.75405 0.80565 1.90719 1.24642 1.50074 1.73996 1.84559 1.49495 1.73914 1.24403 1.21783 1.00847 0.87874 0.88795 0.92101 0.89687 0.89699 0.90393 0.90557 0.85739 0.86124 0.86276 0.86022 0.85707 0.73103 0.88308 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.58 13.29 55.43 0.74 -23.85 16 2 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.68 9.13 -34.44 -0.31 -14.99 16 8 H 0.07 1.85 7.71 -52.48 -0.40 1.44 16 9 C -0.42 -9.87 5.93 36.00 0.21 -9.66 16 10 S 2.59 54.09 5.57 -107.50 -0.60 53.49 16 11 O -0.97 -22.22 17.28 -57.54 -0.99 -23.22 16 12 O -0.97 -22.41 17.60 -57.54 -1.01 -23.42 16 13 N -1.02 -16.35 3.62 -111.42 -0.40 -16.75 16 14 C 0.13 1.78 6.40 -3.07 -0.02 1.76 16 15 C -0.04 -0.52 2.30 -89.94 -0.21 -0.72 16 16 H 0.11 1.30 7.20 -51.93 -0.37 0.93 16 17 C -0.07 -0.84 4.93 -104.62 -0.52 -1.36 16 18 C -0.10 -1.08 9.68 -39.58 -0.38 -1.47 16 19 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 20 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 21 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 22 C -0.11 -1.24 8.12 -39.58 -0.32 -1.56 16 23 C -0.09 -1.03 2.92 -89.62 -0.26 -1.29 16 24 H 0.12 1.26 6.85 -51.93 -0.36 0.91 16 25 C 0.49 5.54 7.65 36.01 0.28 5.81 16 26 O -0.51 -6.78 16.48 -18.75 -0.31 -7.09 16 27 O -0.51 -4.51 13.42 -39.26 -0.53 -5.04 16 28 C 0.13 1.79 6.53 -2.53 -0.02 1.77 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.09 2.01 8.14 -51.92 -0.42 1.58 16 31 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 32 H 0.08 1.08 7.01 -51.93 -0.36 0.72 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.12 1.24 7.98 -52.49 -0.42 0.82 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.28 7.30 -52.49 -0.38 0.89 16 39 H 0.41 1.83 9.10 45.56 0.41 2.24 16 40 H 0.10 1.32 7.66 -51.93 -0.40 0.92 16 41 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -35.05 363.05 -9.87 -44.92 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.37 Total: 4.10 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -2.84 Total: -24.34 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.33 Total: -40.60 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -2.84 Total: -58.77 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.60 Total: 53.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.05 -9.87 -44.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574040587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.169 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds