Wall clock time and date at job start Tue Mar 31 2020 22:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48498 * 109.47039 * 239.99979 * 3 2 1 5 5 H 1.48496 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47162 * 120.00179 * 3 2 1 7 7 C 1.37875 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99615 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00583 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47467 * 179.97438 * 9 7 2 11 11 O 1.42100 * 110.53875 * 68.37482 * 10 9 7 12 12 O 1.42098 * 110.54462 * 291.62265 * 10 9 7 13 13 N 1.65600 * 104.44972 * 179.97438 * 10 9 7 14 14 C 1.47029 * 125.64731 * 90.00259 * 13 10 9 15 15 C 1.54315 * 107.27187 * 178.90536 * 14 13 10 16 16 H 1.08995 * 110.72344 * 96.34632 * 15 14 13 17 17 C 1.50706 * 110.72015 * 219.44641 * 15 14 13 18 18 C 1.38238 * 119.99727 * 238.54757 * 17 15 14 19 19 C 1.38234 * 119.99693 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.00240 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38234 * 120.00207 * 58.56248 * 17 15 14 23 23 C 1.55161 * 102.94235 * 337.80608 * 15 14 13 24 24 H 1.08999 * 111.00192 * 277.42778 * 23 15 14 25 25 C 1.50700 * 111.00415 * 153.57788 * 23 15 14 26 26 O 1.20831 * 119.99706 * 0.02562 * 25 23 15 27 27 O 1.34231 * 120.00147 * 180.02562 * 25 23 15 28 28 C 1.47424 * 125.65092 * 269.95725 * 13 10 9 29 29 H 0.97000 * 119.99609 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47465 * 59.99527 * 9 7 2 31 31 H 1.08998 * 109.47191 * 299.99459 * 9 7 2 32 32 H 1.09002 * 109.88146 * 59.48605 * 14 13 10 33 33 H 1.09005 * 110.00754 * 298.39840 * 14 13 10 34 34 H 1.07997 * 119.99846 * 359.97438 * 18 17 15 35 35 H 1.07999 * 119.99751 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 38 38 H 1.07999 * 120.00008 * 0.02562 * 22 17 15 39 39 H 0.96693 * 116.99680 * 179.97438 * 27 25 23 40 40 H 1.08993 * 110.36869 * 323.00692 * 28 13 10 41 41 H 1.09003 * 110.36065 * 85.22207 * 28 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.1264 -3.9383 1.2375 12 8 3.1264 -3.9384 -1.2364 13 7 1.4792 -5.2341 0.0013 14 6 0.9871 -5.9362 -1.1932 15 6 0.1699 -7.1513 -0.7062 16 1 -0.8938 -6.9152 -0.6801 17 6 0.4265 -8.3515 -1.5808 18 6 -0.6231 -8.9627 -2.2409 19 6 -0.3879 -10.0639 -3.0427 20 6 0.8970 -10.5536 -3.1849 21 6 1.9458 -9.9454 -2.5209 22 6 1.7113 -8.8413 -1.7228 23 6 0.7189 -7.3881 0.7256 24 1 1.6418 -7.9675 0.6992 25 6 -0.3127 -8.0586 1.5956 26 8 -1.3978 -8.3356 1.1419 27 8 -0.0263 -8.3482 2.8746 28 6 0.9872 -5.9379 1.1996 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5568 0.8903 32 1 1.8288 -6.2738 -1.7979 33 1 0.3515 -5.2731 -1.7802 34 1 -1.6270 -8.5803 -2.1294 35 1 -1.2080 -10.5416 -3.5580 36 1 1.0806 -11.4142 -3.8110 37 1 2.9490 -10.3306 -2.6285 38 1 2.5312 -8.3642 -1.2066 39 1 -0.7200 -8.7779 3.3934 40 1 1.7452 -5.9289 1.9828 41 1 0.0665 -5.4779 1.5583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574040587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:19 Heat of formation + Delta-G solvation = -163.496948 kcal Electronic energy + Delta-G solvation = -27467.837802 eV Core-core repulsion = 23438.465282 eV Total energy + Delta-G solvation = -4029.372520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82061 -40.30514 -38.77413 -38.03952 -37.09578 -36.88836 -35.41752 -33.68556 -31.78801 -31.59688 -31.04286 -29.21309 -25.68193 -25.20378 -24.27303 -23.47497 -22.35765 -20.86745 -19.99392 -19.21328 -19.11614 -18.39104 -18.21575 -17.50318 -17.23690 -17.03227 -16.57310 -16.19414 -16.08750 -15.77207 -15.43972 -14.83877 -14.61419 -14.42557 -14.33295 -14.11453 -14.06223 -14.02592 -13.71756 -13.45594 -13.16201 -13.10705 -13.05662 -12.83050 -12.72159 -12.62541 -12.52141 -12.47902 -12.24337 -11.85140 -11.82055 -11.71501 -11.57847 -11.23908 -10.78580 -10.01934 -9.77024 -9.59952 -8.42135 -6.61081 -0.56487 0.42003 0.53729 1.11441 1.38227 1.41301 1.49503 1.77125 2.08548 2.31244 2.78100 2.91664 2.98959 3.10141 3.35561 3.52321 3.70056 3.98849 4.04935 4.11863 4.21918 4.28438 4.36311 4.37714 4.45074 4.63311 4.67346 4.68557 4.71391 4.75797 4.77055 4.96351 5.04652 5.12304 5.20355 5.31724 5.34185 5.57577 5.60535 5.65839 5.70668 5.72541 6.13939 6.49410 6.97338 7.11052 8.70092 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.003247 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.492805 B = 8622.057303 C = 9262.787549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.570 4.570 8 H 0.066 0.934 9 C -0.432 4.432 10 S 2.636 3.364 11 O -0.991 6.991 12 O -0.993 6.993 13 N -1.016 6.016 14 C 0.121 3.879 15 C -0.033 4.033 16 H 0.107 0.893 17 C -0.087 4.087 18 C -0.115 4.115 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.084 4.084 24 H 0.138 0.862 25 C 0.502 3.498 26 O -0.530 6.530 27 O -0.507 6.507 28 C 0.124 3.876 29 H 0.274 0.726 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.431 0.569 40 H 0.102 0.898 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 -21.496 -0.842 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.608 4.608 8 H 0.084 0.916 9 C -0.566 4.566 10 S 2.736 3.264 11 O -0.982 6.982 12 O -0.984 6.984 13 N -0.854 5.854 14 C -0.004 4.004 15 C -0.053 4.053 16 H 0.125 0.875 17 C -0.087 4.087 18 C -0.133 4.133 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.104 4.104 24 H 0.156 0.844 25 C 0.345 3.655 26 O -0.420 6.420 27 O -0.321 6.321 28 C -0.001 4.001 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.293 0.707 40 H 0.120 0.880 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.357 -21.225 -1.182 21.301 hybrid contribution -0.977 0.988 0.361 1.436 sum -2.334 -20.237 -0.821 20.388 Atomic orbital electron populations 1.70024 1.07554 1.28954 1.47899 1.25832 0.95944 1.03137 0.92781 0.85529 0.78743 0.77372 0.79896 1.18664 1.19447 1.18580 1.20734 0.93090 0.90712 1.56309 0.91613 1.27837 1.11255 1.11417 1.06114 1.04202 0.75387 0.74147 0.72618 1.93439 1.71751 1.86569 1.46454 1.93442 1.71778 1.86563 1.46580 1.58576 1.70156 1.43446 1.13212 1.21982 0.98374 0.93130 0.86888 1.21069 1.01306 0.92025 0.90878 0.87497 1.19578 0.94203 0.96357 0.98570 1.21243 0.98858 0.96407 0.96762 1.21433 0.97984 0.96353 0.98649 1.21498 0.92666 1.00514 0.99528 1.21416 1.00339 0.95720 0.96840 1.21234 0.96285 0.97266 0.99786 1.22304 0.98693 0.96456 0.92967 0.84419 1.22765 0.86760 0.74941 0.81084 1.90719 1.25417 1.51212 1.74605 1.84511 1.50410 1.73714 1.23416 1.22013 1.01230 0.89045 0.87789 0.91705 0.90353 0.90222 0.90276 0.90403 0.85590 0.84139 0.83847 0.84178 0.85568 0.70723 0.87990 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.53 13.29 21.45 0.28 -51.24 16 2 C 0.03 1.46 5.46 84.65 0.46 1.92 16 3 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.57 -31.72 9.13 25.60 0.23 -31.49 16 8 H 0.07 3.58 7.71 -2.91 -0.02 3.56 16 9 C -0.43 -21.12 5.93 71.23 0.42 -20.70 16 10 S 2.64 110.95 5.57 -56.49 -0.31 110.64 16 11 O -0.99 -45.32 17.28 -127.65 -2.21 -47.52 16 12 O -0.99 -46.09 17.60 -127.65 -2.25 -48.33 16 13 N -1.02 -32.41 3.62 -506.43 -1.83 -34.24 16 14 C 0.12 3.34 6.40 86.72 0.56 3.89 16 15 C -0.03 -0.76 2.30 -10.35 -0.02 -0.78 16 16 H 0.11 2.51 7.20 -2.39 -0.02 2.50 16 17 C -0.09 -1.88 4.93 -19.86 -0.10 -1.98 16 18 C -0.11 -2.35 9.68 22.27 0.22 -2.13 16 19 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 20 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 21 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 22 C -0.13 -2.60 8.12 22.27 0.18 -2.42 16 23 C -0.08 -1.82 2.92 -10.15 -0.03 -1.85 16 24 H 0.14 2.59 6.85 -2.39 -0.02 2.58 16 25 C 0.50 10.50 7.65 71.24 0.54 11.04 16 26 O -0.53 -13.55 16.48 21.95 0.36 -13.19 16 27 O -0.51 -7.85 13.42 -51.43 -0.69 -8.54 16 28 C 0.12 3.25 6.53 86.85 0.57 3.82 16 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.08 3.85 8.14 -2.39 -0.02 3.83 16 31 H 0.08 3.89 8.14 -2.39 -0.02 3.87 16 32 H 0.08 2.17 7.01 -2.39 -0.02 2.16 16 33 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.13 2.44 7.98 -2.91 -0.02 2.42 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.13 2.44 7.30 -2.91 -0.02 2.42 16 39 H 0.43 2.83 9.10 -74.06 -0.67 2.15 16 40 H 0.10 2.61 7.66 -2.39 -0.02 2.60 16 41 H 0.08 1.98 8.03 -2.39 -0.02 1.96 16 Total: -1.00 -74.40 363.05 -0.52 -74.93 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.39 Total: 19.45 kcal Atomic # 6 Polarization: -50.04 SS G_CDS: 3.70 Total: -46.33 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -1.55 Total: -85.49 kcal Atomic # 8 Polarization: -112.80 SS G_CDS: -4.78 Total: -117.58 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 110.95 SS G_CDS: -0.31 Total: 110.64 kcal Total: -74.40 -0.52 -74.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574040587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.570 kcal (2) G-P(sol) polarization free energy of solvation -74.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds