Wall clock time and date at job start Tue Mar 31 2020 22:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00482 * 2 1 4 4 H 1.48498 * 109.47028 * 275.22441 * 3 2 1 5 5 H 1.48507 * 109.46645 * 35.21974 * 3 2 1 6 6 H 1.48494 * 109.47469 * 155.22225 * 3 2 1 7 7 C 1.39949 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99564 * 340.60898 * 7 2 1 9 9 C 1.41395 * 120.00153 * 160.62050 * 7 2 1 10 10 C 1.40735 * 120.23904 * 332.98600 * 9 7 2 11 11 C 1.37603 * 119.74409 * 180.02562 * 10 9 7 12 12 C 1.38666 * 120.24697 * 359.72409 * 11 10 9 13 13 C 1.38620 * 120.49592 * 0.55571 * 12 11 10 14 14 S 1.76201 * 119.87022 * 179.72049 * 13 12 11 15 15 O 1.42096 * 106.39902 * 156.18750 * 14 13 12 16 16 O 1.42095 * 106.40397 * 23.26687 * 14 13 12 17 17 N 1.65600 * 107.21958 * 269.72599 * 14 13 12 18 18 C 1.46500 * 120.00000 * 65.00090 * 17 14 13 19 19 C 1.52992 * 109.47375 * 163.03472 * 18 17 14 20 20 C 1.50694 * 112.91098 * 293.96910 * 19 18 17 21 21 O 1.20826 * 120.00436 * 132.56050 * 20 19 18 22 22 O 1.34226 * 120.00053 * 312.56277 * 20 19 18 23 23 C 1.53788 * 113.61407 * 65.22172 * 19 18 17 24 24 C 1.53777 * 87.08354 * 89.11329 * 23 19 18 25 25 C 1.53786 * 87.08160 * 25.43398 * 24 23 19 26 26 C 1.37629 * 120.25192 * 359.44816 * 13 12 11 27 27 H 0.96999 * 119.99577 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.13302 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.87665 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.75146 * 180.29842 * 12 11 10 31 31 H 0.96996 * 120.00378 * 245.00717 * 17 14 13 32 32 H 1.09004 * 109.47128 * 43.03490 * 18 17 14 33 33 H 1.09004 * 109.47457 * 283.03881 * 18 17 14 34 34 H 0.96705 * 117.00552 * 179.97438 * 22 20 19 35 35 H 1.09005 * 113.61078 * 334.56472 * 23 19 18 36 36 H 1.08995 * 113.61529 * 203.67077 * 23 19 18 37 37 H 1.08999 * 113.61173 * 139.98131 * 24 23 19 38 38 H 1.08991 * 113.61880 * 270.88681 * 24 23 19 39 39 H 1.09004 * 113.61415 * 89.11032 * 25 24 23 40 40 H 1.08990 * 113.61824 * 219.93412 * 25 24 23 41 41 H 1.07999 * 120.13374 * 180.25293 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3795 2.1101 -1.3942 5 1 1.4993 2.6183 0.8075 6 1 3.5907 1.4108 0.5867 7 6 2.0079 -1.2120 -0.0005 8 1 1.5138 -2.1209 0.3096 9 6 3.3618 -1.2466 -0.4069 10 6 3.8552 -0.2873 -1.3108 11 6 5.1744 -0.3308 -1.6998 12 6 6.0179 -1.3115 -1.2002 13 6 5.5413 -2.2647 -0.3138 14 16 6.6259 -3.5078 0.3051 15 8 6.0704 -3.9480 1.5366 16 8 7.9424 -2.9858 0.1887 17 7 6.5397 -4.7948 -0.7334 18 6 7.0086 -4.6546 -2.1142 19 6 7.2191 -6.0416 -2.7247 20 6 8.3368 -6.8087 -2.0665 21 8 8.1677 -7.9584 -1.7358 22 8 9.5204 -6.2147 -1.8475 23 6 5.9208 -6.8521 -2.8750 24 6 5.7706 -6.2057 -4.2622 25 6 7.2988 -6.0331 -4.2604 26 6 4.2255 -2.2405 0.0890 27 1 -0.4849 0.8401 0.0004 28 1 3.2010 0.4800 -1.6977 29 1 5.5554 0.4045 -2.3930 30 1 7.0531 -1.3352 -1.5072 31 1 6.1787 -5.6415 -0.4274 32 1 7.9507 -4.1064 -2.1241 33 1 6.2654 -4.1102 -2.6968 34 1 10.2068 -6.7469 -1.4222 35 1 5.1408 -6.5616 -2.1711 36 1 6.0805 -7.9297 -2.9102 37 1 5.4098 -6.8931 -5.0273 38 1 5.2247 -5.2625 -4.2476 39 1 7.8351 -6.8869 -4.6745 40 1 7.6312 -5.0822 -4.6764 41 1 3.8571 -2.9816 0.7828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585819374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:17 Heat of formation + Delta-G solvation = -129.938624 kcal Electronic energy + Delta-G solvation = -27646.628478 eV Core-core repulsion = 23618.711156 eV Total energy + Delta-G solvation = -4027.917322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16469 -38.70346 -37.96527 -36.80886 -36.24866 -35.44499 -34.51443 -33.85076 -30.78485 -30.21113 -28.42318 -26.04590 -25.45702 -24.89589 -22.46123 -22.27873 -20.95620 -19.38785 -19.03024 -18.25608 -18.12751 -17.50933 -16.98126 -16.37752 -16.02710 -15.70509 -15.42872 -15.11039 -14.86223 -14.61854 -14.29328 -13.87906 -13.49121 -13.22885 -13.06187 -12.91568 -12.71053 -12.29799 -12.27177 -11.92298 -11.76210 -11.74463 -11.71496 -11.63842 -11.51890 -11.45725 -11.09456 -10.85342 -10.82423 -10.71607 -10.52208 -10.36322 -10.07188 -9.81106 -9.50655 -9.22550 -8.32833 -7.95207 -7.15775 -4.69295 0.82842 1.85973 1.97192 2.37315 2.83353 2.94827 3.08226 3.16596 3.33237 3.80136 3.99965 4.07308 4.14271 4.23672 4.31987 4.47466 4.84884 4.87730 5.10947 5.16585 5.30372 5.34237 5.45066 5.53919 5.67002 5.69588 5.76327 5.77086 5.85934 5.97418 6.08552 6.14786 6.30883 6.41814 6.52643 6.80397 6.95121 7.05933 7.15307 7.34665 7.56328 7.71181 7.72710 8.12073 8.37376 8.55473 9.85678 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.003474 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.835444 B = 8056.781538 C = 8549.692373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.084 3.916 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.440 4.440 8 H 0.095 0.905 9 C 0.074 3.926 10 C -0.202 4.202 11 C -0.089 4.089 12 C -0.163 4.163 13 C -0.623 4.623 14 S 2.690 3.310 15 O -0.967 6.967 16 O -0.967 6.967 17 N -1.123 6.123 18 C 0.145 3.855 19 C -0.090 4.090 20 C 0.496 3.504 21 O -0.516 6.516 22 O -0.507 6.507 23 C -0.120 4.120 24 C -0.140 4.140 25 C -0.115 4.115 26 C -0.104 4.104 27 H 0.289 0.711 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.415 0.585 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.409 0.591 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.800 -8.835 -8.869 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.467 4.467 8 H 0.113 0.887 9 C 0.069 3.931 10 C -0.222 4.222 11 C -0.109 4.109 12 C -0.184 4.184 13 C -0.714 4.714 14 S 2.785 3.215 15 O -0.957 6.957 16 O -0.957 6.957 17 N -0.882 5.882 18 C 0.018 3.982 19 C -0.092 4.092 20 C 0.338 3.662 21 O -0.404 6.404 22 O -0.318 6.318 23 C -0.157 4.157 24 C -0.177 4.177 25 C -0.153 4.153 26 C -0.125 4.125 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.249 0.751 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.267 0.733 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.773 -8.625 -8.239 16.760 hybrid contribution -0.058 0.395 -0.017 0.400 sum 11.715 -8.230 -8.256 16.527 Atomic orbital electron populations 1.69681 1.08124 1.30673 1.33353 1.26193 0.94779 1.01869 0.90861 0.86354 0.81491 0.79714 0.78947 1.19423 1.21383 1.16610 1.19556 0.93337 0.96557 1.37274 0.88655 1.17773 0.93106 0.91517 0.90667 1.21282 0.95964 1.02768 1.02144 1.20691 0.93832 0.97453 0.98887 1.20053 0.98450 0.97985 1.01931 1.29902 1.10294 1.17229 1.14023 1.01721 0.74133 0.73014 0.72648 1.93563 1.80005 1.81417 1.40713 1.93529 1.36620 1.79293 1.86293 1.55628 1.80099 1.28756 1.23668 1.21050 1.01531 0.93823 0.81780 1.22170 0.93104 0.96661 0.97290 1.23171 0.82687 0.85386 0.74915 1.90703 1.82262 1.18828 1.48597 1.84579 1.23746 1.49142 1.74359 1.23021 0.94229 1.00311 0.98155 1.22880 0.95464 1.02144 0.97226 1.22919 0.98062 1.03791 0.90497 1.20809 0.90672 1.01420 0.99629 0.90073 0.87659 0.87903 0.87006 0.75111 0.88533 0.89483 0.73286 0.89640 0.88326 0.90377 0.88783 0.89218 0.89403 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.11 13.93 55.55 0.77 -19.33 16 2 C 0.08 2.08 5.40 -17.34 -0.09 1.99 16 3 Si 0.91 19.73 24.47 -169.99 -4.16 15.57 16 4 H -0.27 -5.55 6.65 56.52 0.38 -5.17 16 5 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.24 -5.47 6.85 56.52 0.39 -5.08 16 7 C -0.44 -11.27 9.58 -37.74 -0.36 -11.63 16 8 H 0.10 2.54 8.06 -52.49 -0.42 2.11 16 9 C 0.07 1.77 5.17 -106.82 -0.55 1.21 16 10 C -0.20 -4.54 7.19 -38.87 -0.28 -4.82 16 11 C -0.09 -1.78 10.02 -39.66 -0.40 -2.18 16 12 C -0.16 -3.15 9.53 -39.28 -0.37 -3.52 16 13 C -0.62 -12.37 5.94 -39.66 -0.24 -12.61 16 14 S 2.69 46.85 5.73 -107.50 -0.62 46.23 16 15 O -0.97 -19.45 17.27 -57.17 -0.99 -20.43 16 16 O -0.97 -18.33 16.70 -57.17 -0.96 -19.28 16 17 N -1.12 -14.88 5.71 -10.61 -0.06 -14.94 16 18 C 0.14 1.63 5.38 -4.05 -0.02 1.61 16 19 C -0.09 -0.88 0.91 -154.85 -0.14 -1.02 16 20 C 0.50 5.58 7.27 36.00 0.26 5.84 16 21 O -0.52 -6.97 16.65 -18.75 -0.31 -7.29 16 22 O -0.51 -4.91 13.11 -39.25 -0.51 -5.42 16 23 C -0.12 -1.10 6.73 -25.92 -0.17 -1.28 16 24 C -0.14 -1.06 7.73 -25.92 -0.20 -1.26 16 25 C -0.11 -0.86 7.21 -25.91 -0.19 -1.05 16 26 C -0.10 -2.32 9.26 -38.87 -0.36 -2.68 16 27 H 0.29 6.57 8.30 -40.82 -0.34 6.24 16 28 H 0.11 2.33 4.43 -52.49 -0.23 2.10 16 29 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.11 1.90 7.59 -52.49 -0.40 1.50 16 31 H 0.41 4.91 7.97 -34.47 -0.27 4.64 16 32 H 0.10 1.10 7.54 -51.93 -0.39 0.71 16 33 H 0.09 0.90 7.31 -51.93 -0.38 0.52 16 34 H 0.41 2.27 9.10 45.56 0.41 2.68 16 35 H 0.08 0.80 7.52 -51.93 -0.39 0.41 16 36 H 0.10 0.94 7.42 -51.93 -0.39 0.55 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.73 7.61 -51.93 -0.40 0.34 16 39 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 41 H 0.12 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -32.40 354.36 -8.73 -41.13 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.12 Total: 9.83 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: -3.12 Total: -31.39 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.71 Total: -34.27 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -2.77 Total: -52.43 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.16 Total: 15.57 kcal Atomic # 16 Polarization: 46.85 SS G_CDS: -0.62 Total: 46.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.40 -8.73 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585819374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.813 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds