Wall clock time and date at job start Tue Mar 31 2020 22:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00482 * 2 1 4 4 H 1.48498 * 109.47028 * 275.22441 * 3 2 1 5 5 H 1.48507 * 109.46645 * 35.21974 * 3 2 1 6 6 H 1.48494 * 109.47469 * 155.22225 * 3 2 1 7 7 C 1.39949 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99564 * 340.60898 * 7 2 1 9 9 C 1.41395 * 120.00153 * 160.62050 * 7 2 1 10 10 C 1.40735 * 120.23904 * 332.98600 * 9 7 2 11 11 C 1.37603 * 119.74409 * 180.02562 * 10 9 7 12 12 C 1.38666 * 120.24697 * 359.72409 * 11 10 9 13 13 C 1.38620 * 120.49592 * 0.55571 * 12 11 10 14 14 S 1.76201 * 119.87022 * 179.72049 * 13 12 11 15 15 O 1.42096 * 106.39902 * 156.18750 * 14 13 12 16 16 O 1.42095 * 106.40397 * 23.26687 * 14 13 12 17 17 N 1.65600 * 107.21958 * 269.72599 * 14 13 12 18 18 C 1.46500 * 120.00000 * 65.00090 * 17 14 13 19 19 C 1.52992 * 109.47375 * 163.03472 * 18 17 14 20 20 C 1.50694 * 112.91098 * 293.96910 * 19 18 17 21 21 O 1.20826 * 120.00436 * 132.56050 * 20 19 18 22 22 O 1.34226 * 120.00053 * 312.56277 * 20 19 18 23 23 C 1.53788 * 113.61407 * 65.22172 * 19 18 17 24 24 C 1.53777 * 87.08354 * 89.11329 * 23 19 18 25 25 C 1.53786 * 87.08160 * 25.43398 * 24 23 19 26 26 C 1.37629 * 120.25192 * 359.44816 * 13 12 11 27 27 H 0.96999 * 119.99577 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.13302 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.87665 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.75146 * 180.29842 * 12 11 10 31 31 H 0.96996 * 120.00378 * 245.00717 * 17 14 13 32 32 H 1.09004 * 109.47128 * 43.03490 * 18 17 14 33 33 H 1.09004 * 109.47457 * 283.03881 * 18 17 14 34 34 H 0.96705 * 117.00552 * 179.97438 * 22 20 19 35 35 H 1.09005 * 113.61078 * 334.56472 * 23 19 18 36 36 H 1.08995 * 113.61529 * 203.67077 * 23 19 18 37 37 H 1.08999 * 113.61173 * 139.98131 * 24 23 19 38 38 H 1.08991 * 113.61880 * 270.88681 * 24 23 19 39 39 H 1.09004 * 113.61415 * 89.11032 * 25 24 23 40 40 H 1.08990 * 113.61824 * 219.93412 * 25 24 23 41 41 H 1.07999 * 120.13374 * 180.25293 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3795 2.1101 -1.3942 5 1 1.4993 2.6183 0.8075 6 1 3.5907 1.4108 0.5867 7 6 2.0079 -1.2120 -0.0005 8 1 1.5138 -2.1209 0.3096 9 6 3.3618 -1.2466 -0.4069 10 6 3.8552 -0.2873 -1.3108 11 6 5.1744 -0.3308 -1.6998 12 6 6.0179 -1.3115 -1.2002 13 6 5.5413 -2.2647 -0.3138 14 16 6.6259 -3.5078 0.3051 15 8 6.0704 -3.9480 1.5366 16 8 7.9424 -2.9858 0.1887 17 7 6.5397 -4.7948 -0.7334 18 6 7.0086 -4.6546 -2.1142 19 6 7.2191 -6.0416 -2.7247 20 6 8.3368 -6.8087 -2.0665 21 8 8.1677 -7.9584 -1.7358 22 8 9.5204 -6.2147 -1.8475 23 6 5.9208 -6.8521 -2.8750 24 6 5.7706 -6.2057 -4.2622 25 6 7.2988 -6.0331 -4.2604 26 6 4.2255 -2.2405 0.0890 27 1 -0.4849 0.8401 0.0004 28 1 3.2010 0.4800 -1.6977 29 1 5.5554 0.4045 -2.3930 30 1 7.0531 -1.3352 -1.5072 31 1 6.1787 -5.6415 -0.4274 32 1 7.9507 -4.1064 -2.1241 33 1 6.2654 -4.1102 -2.6968 34 1 10.2068 -6.7469 -1.4222 35 1 5.1408 -6.5616 -2.1711 36 1 6.0805 -7.9297 -2.9102 37 1 5.4098 -6.8931 -5.0273 38 1 5.2247 -5.2625 -4.2476 39 1 7.8351 -6.8869 -4.6745 40 1 7.6312 -5.0822 -4.6764 41 1 3.8571 -2.9816 0.7828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585819374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:17 Heat of formation + Delta-G solvation = -154.141439 kcal Electronic energy + Delta-G solvation = -27647.677990 eV Core-core repulsion = 23618.711156 eV Total energy + Delta-G solvation = -4028.966835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96233 -39.67510 -39.47049 -38.31645 -37.10087 -36.95922 -35.66263 -35.52393 -32.53725 -31.87274 -29.26117 -27.24255 -26.69486 -25.80309 -24.11411 -22.99840 -22.66109 -20.76786 -19.85426 -19.70134 -19.15015 -18.56631 -18.12560 -18.04771 -17.17370 -16.94711 -16.69813 -16.56689 -16.10812 -15.62724 -15.55681 -15.14171 -14.81999 -14.66058 -14.41831 -14.03128 -13.97409 -13.57400 -13.39351 -13.36062 -13.22677 -13.12218 -13.07520 -12.88158 -12.76872 -12.53785 -12.52268 -12.26355 -12.03127 -11.78884 -11.61663 -11.53035 -11.35169 -11.26565 -11.04787 -10.50612 -9.99294 -9.69248 -8.98153 -6.58697 -0.59463 0.19182 0.67162 1.12888 1.21233 1.37592 1.44006 1.98795 2.05713 2.13658 2.41665 2.72177 3.25831 3.31880 3.34831 3.50041 3.55977 3.85303 4.17058 4.20358 4.33135 4.36008 4.45621 4.50390 4.65801 4.73558 4.78881 4.82093 4.86469 4.89269 5.06314 5.07038 5.09109 5.14460 5.35176 5.45056 5.45781 5.58610 5.64906 5.77157 5.91975 6.00685 6.24852 6.59352 6.69473 6.97447 8.09856 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.003474 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.835444 B = 8056.781538 C = 8549.692373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.050 3.950 3 Si 0.958 3.042 4 H -0.246 1.246 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.482 4.482 8 H 0.060 0.940 9 C 0.056 3.944 10 C -0.208 4.208 11 C -0.091 4.091 12 C -0.142 4.142 13 C -0.629 4.629 14 S 2.718 3.282 15 O -0.997 6.997 16 O -0.975 6.975 17 N -1.111 6.111 18 C 0.135 3.865 19 C -0.093 4.093 20 C 0.496 3.504 21 O -0.545 6.545 22 O -0.508 6.508 23 C -0.126 4.126 24 C -0.135 4.135 25 C -0.104 4.104 26 C -0.125 4.125 27 H 0.297 0.703 28 H 0.108 0.892 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.422 0.578 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.425 0.575 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.702 -7.916 -11.036 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.167 4.167 3 Si 0.781 3.219 4 H -0.171 1.171 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.511 4.511 8 H 0.079 0.921 9 C 0.052 3.948 10 C -0.227 4.227 11 C -0.110 4.110 12 C -0.163 4.163 13 C -0.718 4.718 14 S 2.811 3.189 15 O -0.987 6.987 16 O -0.965 6.965 17 N -0.873 5.873 18 C 0.010 3.990 19 C -0.096 4.096 20 C 0.340 3.660 21 O -0.436 6.436 22 O -0.321 6.321 23 C -0.164 4.164 24 C -0.172 4.172 25 C -0.142 4.142 26 C -0.146 4.146 27 H 0.107 0.893 28 H 0.126 0.874 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.258 0.742 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.286 0.714 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.675 -7.689 -10.419 19.571 hybrid contribution -0.689 -0.056 0.602 0.917 sum 13.986 -7.744 -9.818 18.761 Atomic orbital electron populations 1.69707 1.09174 1.31793 1.35669 1.26822 0.95348 1.04158 0.90329 0.85615 0.79599 0.76630 0.80065 1.17077 1.20291 1.17928 1.19522 0.94801 0.96132 1.40652 0.92132 1.17917 0.92682 0.92821 0.91354 1.21491 0.97405 1.02208 1.01606 1.21167 0.92641 0.98220 0.98989 1.20631 0.99922 0.96188 0.99528 1.30321 1.09565 1.18366 1.13524 1.00856 0.73159 0.72786 0.72142 1.93525 1.80408 1.81775 1.42986 1.93517 1.36520 1.79948 1.86520 1.55300 1.79939 1.27657 1.24418 1.21335 1.02163 0.95088 0.80439 1.22237 0.92902 0.95640 0.98835 1.23444 0.83210 0.85055 0.74292 1.90697 1.82848 1.20142 1.49899 1.84543 1.23838 1.49449 1.74264 1.23054 0.93883 1.00124 0.99298 1.22876 0.95772 1.02195 0.96333 1.22953 0.97938 1.05062 0.88260 1.20822 0.91850 1.01519 1.00438 0.89262 0.87396 0.83685 0.83529 0.74169 0.87942 0.88081 0.71377 0.90354 0.88852 0.89179 0.88751 0.88410 0.87745 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.17 13.93 21.83 0.30 -43.86 16 2 C 0.05 2.55 5.40 85.26 0.46 3.01 16 3 Si 0.96 40.33 24.47 68.60 1.68 42.01 16 4 H -0.25 -9.38 6.65 99.48 0.66 -8.72 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.26 -11.13 6.85 99.48 0.68 -10.45 16 7 C -0.48 -26.11 9.58 23.46 0.22 -25.88 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 9 C 0.06 2.72 5.17 -21.29 -0.11 2.61 16 10 C -0.21 -8.97 7.19 22.73 0.16 -8.81 16 11 C -0.09 -3.27 10.02 22.22 0.22 -3.05 16 12 C -0.14 -4.91 9.53 22.46 0.21 -4.69 16 13 C -0.63 -23.80 5.94 22.22 0.13 -23.66 16 14 S 2.72 89.82 5.73 -56.49 -0.32 89.50 16 15 O -1.00 -39.72 17.27 -128.00 -2.21 -41.93 16 16 O -0.98 -33.98 16.70 -128.00 -2.14 -36.12 16 17 N -1.11 -27.37 5.71 -187.49 -1.07 -28.44 16 18 C 0.14 2.64 5.38 86.38 0.46 3.11 16 19 C -0.09 -1.61 0.91 -52.40 -0.05 -1.66 16 20 C 0.50 10.20 7.27 71.23 0.52 10.72 16 21 O -0.55 -14.17 16.65 21.96 0.37 -13.81 16 22 O -0.51 -8.59 13.11 -51.38 -0.67 -9.26 16 23 C -0.13 -2.13 6.73 31.12 0.21 -1.92 16 24 C -0.13 -1.70 7.73 31.12 0.24 -1.46 16 25 C -0.10 -1.23 7.21 31.12 0.22 -1.00 16 26 C -0.13 -5.64 9.26 22.73 0.21 -5.43 16 27 H 0.30 13.95 8.30 -92.71 -0.77 13.18 16 28 H 0.11 4.57 4.43 -2.91 -0.01 4.56 16 29 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.15 4.11 7.59 -2.91 -0.02 4.09 16 31 H 0.42 9.53 7.97 -96.75 -0.77 8.76 16 32 H 0.10 1.93 7.54 -2.39 -0.02 1.92 16 33 H 0.10 1.73 7.31 -2.39 -0.02 1.71 16 34 H 0.42 3.81 9.10 -74.05 -0.67 3.13 16 35 H 0.08 1.41 7.52 -2.38 -0.02 1.39 16 36 H 0.09 1.69 7.42 -2.39 -0.02 1.67 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.21 7.61 -2.39 -0.02 1.19 16 39 H 0.10 1.04 8.09 -2.39 -0.02 1.02 16 40 H 0.10 0.92 8.10 -2.39 -0.02 0.90 16 41 H 0.11 5.01 7.60 -2.91 -0.02 4.99 16 Total: -1.00 -71.25 354.36 -1.35 -72.61 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -0.42 Total: 27.42 kcal Atomic # 6 Polarization: -61.25 SS G_CDS: 3.13 Total: -58.12 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -0.77 Total: -72.30 kcal Atomic # 8 Polarization: -96.46 SS G_CDS: -4.66 Total: -101.12 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 1.68 Total: 42.01 kcal Atomic # 16 Polarization: 89.82 SS G_CDS: -0.32 Total: 89.50 kcal Total: -71.25 -1.35 -72.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585819374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.534 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds