Wall clock time and date at job start Tue Mar 31 2020 22:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86796 * 120.00138 * 2 1 4 4 H 1.48506 * 109.47422 * 240.00427 * 3 2 1 5 5 H 1.48494 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47231 * 120.00327 * 3 2 1 7 7 C 1.39947 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00253 * 162.22277 * 7 2 1 9 9 C 1.41396 * 119.99972 * 342.21648 * 7 2 1 10 10 C 1.40737 * 120.24607 * 335.28172 * 9 7 2 11 11 C 1.37594 * 119.74633 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24905 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.49858 * 359.97438 * 12 11 10 14 14 S 1.76202 * 119.87327 * 180.02562 * 13 12 11 15 15 O 1.42103 * 106.40357 * 23.51890 * 14 13 12 16 16 O 1.42093 * 106.40316 * 156.44192 * 14 13 12 17 17 N 1.65607 * 107.21804 * 269.98106 * 14 13 12 18 18 C 1.46498 * 119.99976 * 64.99812 * 17 14 13 19 19 H 1.09000 * 109.46772 * 25.00478 * 18 17 14 20 20 C 1.52999 * 109.46773 * 145.00099 * 18 17 14 21 21 C 1.52996 * 109.47137 * 294.99878 * 20 18 17 22 22 C 1.53002 * 117.50131 * 243.74679 * 21 20 18 23 23 C 1.53008 * 117.49706 * 175.08949 * 21 20 18 24 24 C 1.50701 * 109.47293 * 265.00070 * 18 17 14 25 25 O 1.20825 * 119.99873 * 0.02562 * 24 18 17 26 26 O 1.34229 * 119.99838 * 180.02562 * 24 18 17 27 27 C 1.37633 * 120.24965 * 0.02562 * 13 12 11 28 28 H 0.97004 * 119.99812 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.12522 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.87348 * 180.02562 * 11 10 9 31 31 H 1.07992 * 119.75055 * 180.02562 * 12 11 10 32 32 H 0.96995 * 120.00000 * 245.00025 * 17 14 13 33 33 H 1.08994 * 109.47459 * 55.00193 * 20 18 17 34 34 H 1.09004 * 109.47051 * 175.00487 * 20 18 17 35 35 H 1.09001 * 115.55254 * 29.42348 * 21 20 18 36 36 H 1.09005 * 117.50096 * 0.02562 * 22 21 20 37 37 H 1.08998 * 117.50180 * 145.01994 * 22 21 20 38 38 H 1.09005 * 117.49526 * 214.97860 * 23 21 20 39 39 H 1.08993 * 117.49761 * 359.97438 * 23 21 20 40 40 H 0.96699 * 116.99874 * 180.02562 * 26 24 18 41 41 H 1.08007 * 120.12871 * 180.26932 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2343 -0.2861 9 6 1.3516 -2.4074 0.3729 10 6 0.2234 -2.3640 1.2132 11 6 -0.4070 -3.5336 1.5706 12 6 0.0648 -4.7518 1.1057 13 6 1.1745 -4.8063 0.2767 14 16 1.7597 -6.3632 -0.3050 15 8 0.6541 -7.2542 -0.2480 16 8 2.4843 -6.0991 -1.4984 17 7 2.8631 -6.9159 0.7994 18 6 2.4334 -7.2512 2.1592 19 1 1.3738 -7.5068 2.1528 20 6 3.2429 -8.4449 2.6700 21 6 2.9182 -9.6796 1.8269 22 6 2.2473 -10.8601 2.5320 23 6 3.7147 -10.9556 2.1068 24 6 2.6592 -6.0672 3.0637 25 8 3.1302 -5.0477 2.6180 26 8 2.3371 -6.1452 4.3644 27 6 1.8209 -3.6491 -0.0936 28 1 -0.4850 0.8401 0.0004 29 1 -0.1455 -1.4163 1.5768 30 1 -1.2731 -3.5027 2.2149 31 1 -0.4364 -5.6648 1.3909 32 1 3.7937 -7.0176 0.5459 33 1 4.3070 -8.2219 2.5929 34 1 2.9867 -8.6386 3.7116 35 1 2.6317 -9.4815 0.7940 36 1 2.0369 -10.7570 3.5966 37 1 1.5198 -11.4389 1.9630 38 1 3.9519 -11.5972 1.2581 39 1 4.4703 -10.9153 2.8913 40 1 2.4998 -5.3600 4.9049 41 1 2.6827 -3.6935 -0.7431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585819381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:25 Heat of formation + Delta-G solvation = -124.683159 kcal Electronic energy + Delta-G solvation = -27902.212521 eV Core-core repulsion = 23874.523093 eV Total energy + Delta-G solvation = -4027.689428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25066 -37.97956 -37.58096 -36.73293 -36.10226 -35.38485 -35.00320 -33.79782 -30.03309 -29.98327 -29.75084 -25.61505 -25.40017 -22.55252 -21.87114 -21.38721 -20.95893 -20.66193 -19.33101 -18.17293 -17.74172 -17.23542 -16.85821 -16.08725 -15.81325 -15.71405 -15.14912 -15.03203 -14.78669 -14.51515 -14.30036 -13.46537 -13.39506 -13.29979 -12.93183 -12.54995 -12.31178 -11.89269 -11.71898 -11.68964 -11.61064 -11.57752 -11.49192 -11.38872 -11.35389 -11.23865 -11.04337 -10.82512 -10.77614 -10.58864 -10.46046 -10.13462 -9.82534 -9.68739 -9.30662 -9.29514 -7.97345 -7.63827 -6.87842 -4.47819 0.91792 2.24171 2.35514 2.69884 2.91640 3.01685 3.04441 3.11456 3.49422 3.60378 3.86550 4.19769 4.35225 4.47572 4.56719 4.70945 4.84431 4.91503 4.93753 5.18709 5.34335 5.45726 5.46719 5.51227 5.57494 5.74396 5.83986 5.94761 6.06730 6.12387 6.17779 6.64447 6.70221 6.80463 6.84331 7.01667 7.09762 7.27761 7.43130 7.76184 7.86203 7.99682 8.03252 8.45511 8.72282 8.77807 10.08000 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.003525 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.834002 B = 7941.101218 C = 8355.119510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.155 4.155 13 C -0.624 4.624 14 S 2.682 3.318 15 O -0.970 6.970 16 O -0.965 6.965 17 N -1.097 6.097 18 C 0.173 3.827 19 H 0.132 0.868 20 C -0.085 4.085 21 C -0.155 4.155 22 C -0.178 4.178 23 C -0.180 4.180 24 C 0.449 3.551 25 O -0.472 6.472 26 O -0.520 6.520 27 C -0.105 4.105 28 H 0.283 0.717 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.420 0.580 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.409 0.591 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -14.321 8.585 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.093 3.907 10 C -0.137 4.137 11 C -0.139 4.139 12 C -0.177 4.177 13 C -0.717 4.717 14 S 2.779 3.221 15 O -0.960 6.960 16 O -0.956 6.956 17 N -0.853 5.853 18 C 0.062 3.938 19 H 0.149 0.851 20 C -0.124 4.124 21 C -0.173 4.173 22 C -0.215 4.215 23 C -0.217 4.217 24 C 0.286 3.714 25 O -0.356 6.356 26 O -0.332 6.332 27 C -0.127 4.127 28 H 0.094 0.906 29 H 0.141 0.859 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.254 0.746 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.268 0.732 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.494 -14.664 7.451 17.052 hybrid contribution 0.690 2.086 0.686 2.302 sum 5.184 -12.578 8.137 15.853 Atomic orbital electron populations 1.69779 1.07635 1.29636 1.35010 1.25926 0.94773 1.01494 0.92104 0.86300 0.80109 0.79851 0.80130 1.18817 1.20279 1.18765 1.19580 0.98305 0.91030 1.40033 0.90039 1.17631 0.91710 0.91930 0.89472 1.21581 0.97660 0.96976 0.97507 1.20744 0.99240 0.93195 1.00727 1.20005 0.97621 0.97315 1.02730 1.29525 1.09034 1.17477 1.15644 1.01922 0.72795 0.74654 0.72710 1.93528 1.51836 1.64268 1.86414 1.93553 1.72724 1.86146 1.43144 1.55631 1.25063 1.82755 1.21896 1.20136 1.02813 0.90093 0.80756 0.85085 1.21385 1.00039 0.91118 0.99840 1.22290 1.05189 0.88951 1.00875 1.23086 0.95500 1.01858 1.01065 1.22981 0.94744 1.00436 1.03564 1.24063 0.75560 0.90263 0.81553 1.90853 1.38689 1.30894 1.75127 1.84458 1.79796 1.46984 1.22012 1.20685 1.00159 0.91694 1.00124 0.90579 0.85943 0.88613 0.87994 0.74560 0.90149 0.88965 0.86942 0.88536 0.88644 0.88778 0.88786 0.73165 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.28 10.97 55.55 0.61 -19.67 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.21 9.05 -37.74 -0.34 -12.55 16 8 H 0.08 2.09 7.91 -52.49 -0.41 1.67 16 9 C 0.10 2.56 5.57 -106.82 -0.60 1.96 16 10 C -0.12 -2.99 8.70 -38.87 -0.34 -3.33 16 11 C -0.12 -2.73 10.02 -39.66 -0.40 -3.13 16 12 C -0.16 -3.39 9.53 -39.29 -0.37 -3.77 16 13 C -0.62 -13.89 5.13 -39.66 -0.20 -14.09 16 14 S 2.68 50.18 5.71 -107.50 -0.61 49.57 16 15 O -0.97 -19.00 16.60 -57.17 -0.95 -19.94 16 16 O -0.97 -20.48 17.26 -57.17 -0.99 -21.46 16 17 N -1.10 -15.34 4.39 -5.88 -0.03 -15.37 16 18 C 0.17 2.12 2.80 -69.08 -0.19 1.93 16 19 H 0.13 1.60 7.50 -51.93 -0.39 1.21 16 20 C -0.08 -0.76 5.06 -26.73 -0.14 -0.90 16 21 C -0.15 -1.42 5.61 -90.62 -0.51 -1.93 16 22 C -0.18 -1.44 10.18 -26.69 -0.27 -1.71 16 23 C -0.18 -1.37 10.26 -26.69 -0.27 -1.65 16 24 C 0.45 6.26 7.69 36.01 0.28 6.53 16 25 O -0.47 -8.54 16.38 -18.75 -0.31 -8.84 16 26 O -0.52 -5.66 13.23 -39.25 -0.52 -6.18 16 27 C -0.11 -2.62 9.26 -38.87 -0.36 -2.98 16 28 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 29 H 0.12 3.17 6.18 -52.49 -0.32 2.85 16 30 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.10 1.98 7.60 -52.49 -0.40 1.58 16 32 H 0.42 4.89 8.84 -34.47 -0.30 4.58 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.71 7.73 -51.93 -0.40 0.31 16 35 H 0.11 1.17 7.69 -51.93 -0.40 0.77 16 36 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.41 3.17 9.10 45.56 0.41 3.59 16 41 H 0.11 2.66 7.60 -52.48 -0.40 2.26 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -33.39 366.56 -10.39 -43.77 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -4.28 Total: 12.89 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: -3.80 Total: -33.83 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.58 Total: -35.03 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -2.76 Total: -56.44 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 50.18 SS G_CDS: -0.61 Total: 49.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.39 -10.39 -43.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585819381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.908 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds