Wall clock time and date at job start Tue Mar 31 2020 22:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86796 * 120.00138 * 2 1 4 4 H 1.48506 * 109.47422 * 240.00427 * 3 2 1 5 5 H 1.48494 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47231 * 120.00327 * 3 2 1 7 7 C 1.39947 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00253 * 162.22277 * 7 2 1 9 9 C 1.41396 * 119.99972 * 342.21648 * 7 2 1 10 10 C 1.40737 * 120.24607 * 335.28172 * 9 7 2 11 11 C 1.37594 * 119.74633 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24905 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.49858 * 359.97438 * 12 11 10 14 14 S 1.76202 * 119.87327 * 180.02562 * 13 12 11 15 15 O 1.42103 * 106.40357 * 23.51890 * 14 13 12 16 16 O 1.42093 * 106.40316 * 156.44192 * 14 13 12 17 17 N 1.65607 * 107.21804 * 269.98106 * 14 13 12 18 18 C 1.46498 * 119.99976 * 64.99812 * 17 14 13 19 19 H 1.09000 * 109.46772 * 25.00478 * 18 17 14 20 20 C 1.52999 * 109.46773 * 145.00099 * 18 17 14 21 21 C 1.52996 * 109.47137 * 294.99878 * 20 18 17 22 22 C 1.53002 * 117.50131 * 243.74679 * 21 20 18 23 23 C 1.53008 * 117.49706 * 175.08949 * 21 20 18 24 24 C 1.50701 * 109.47293 * 265.00070 * 18 17 14 25 25 O 1.20825 * 119.99873 * 0.02562 * 24 18 17 26 26 O 1.34229 * 119.99838 * 180.02562 * 24 18 17 27 27 C 1.37633 * 120.24965 * 0.02562 * 13 12 11 28 28 H 0.97004 * 119.99812 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.12522 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.87348 * 180.02562 * 11 10 9 31 31 H 1.07992 * 119.75055 * 180.02562 * 12 11 10 32 32 H 0.96995 * 120.00000 * 245.00025 * 17 14 13 33 33 H 1.08994 * 109.47459 * 55.00193 * 20 18 17 34 34 H 1.09004 * 109.47051 * 175.00487 * 20 18 17 35 35 H 1.09001 * 115.55254 * 29.42348 * 21 20 18 36 36 H 1.09005 * 117.50096 * 0.02562 * 22 21 20 37 37 H 1.08998 * 117.50180 * 145.01994 * 22 21 20 38 38 H 1.09005 * 117.49526 * 214.97860 * 23 21 20 39 39 H 1.08993 * 117.49761 * 359.97438 * 23 21 20 40 40 H 0.96699 * 116.99874 * 180.02562 * 26 24 18 41 41 H 1.08007 * 120.12871 * 180.26932 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2343 -0.2861 9 6 1.3516 -2.4074 0.3729 10 6 0.2234 -2.3640 1.2132 11 6 -0.4070 -3.5336 1.5706 12 6 0.0648 -4.7518 1.1057 13 6 1.1745 -4.8063 0.2767 14 16 1.7597 -6.3632 -0.3050 15 8 0.6541 -7.2542 -0.2480 16 8 2.4843 -6.0991 -1.4984 17 7 2.8631 -6.9159 0.7994 18 6 2.4334 -7.2512 2.1592 19 1 1.3738 -7.5068 2.1528 20 6 3.2429 -8.4449 2.6700 21 6 2.9182 -9.6796 1.8269 22 6 2.2473 -10.8601 2.5320 23 6 3.7147 -10.9556 2.1068 24 6 2.6592 -6.0672 3.0637 25 8 3.1302 -5.0477 2.6180 26 8 2.3371 -6.1452 4.3644 27 6 1.8209 -3.6491 -0.0936 28 1 -0.4850 0.8401 0.0004 29 1 -0.1455 -1.4163 1.5768 30 1 -1.2731 -3.5027 2.2149 31 1 -0.4364 -5.6648 1.3909 32 1 3.7937 -7.0176 0.5459 33 1 4.3070 -8.2219 2.5929 34 1 2.9867 -8.6386 3.7116 35 1 2.6317 -9.4815 0.7940 36 1 2.0369 -10.7570 3.5966 37 1 1.5198 -11.4389 1.9630 38 1 3.9519 -11.5972 1.2581 39 1 4.4703 -10.9153 2.8913 40 1 2.4998 -5.3600 4.9049 41 1 2.6827 -3.6935 -0.7431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585819381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:24 Heat of formation + Delta-G solvation = -148.107075 kcal Electronic energy + Delta-G solvation = -27903.228258 eV Core-core repulsion = 23874.523093 eV Total energy + Delta-G solvation = -4028.705165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33170 -39.42707 -38.75498 -38.29763 -37.12891 -36.99111 -36.06241 -35.66987 -31.91301 -31.58954 -30.96146 -27.36356 -26.47510 -23.67717 -23.12609 -22.83147 -22.38790 -21.38788 -20.78289 -19.78560 -18.93496 -18.65054 -17.99018 -17.74872 -17.15081 -16.75569 -16.74054 -16.54125 -16.11924 -15.86043 -15.25704 -15.09737 -14.98865 -14.34336 -14.29672 -13.96377 -13.72668 -13.31128 -13.30825 -13.14180 -13.08477 -13.04792 -12.88277 -12.80403 -12.58971 -12.40187 -12.30132 -12.23543 -12.21718 -11.97963 -11.57157 -11.38969 -11.14551 -11.10737 -10.77627 -10.63013 -9.81917 -9.54070 -8.73809 -6.45454 -0.59953 0.42778 0.86217 1.27191 1.34100 1.44145 1.47639 1.76511 2.16049 2.25923 2.53545 2.72706 2.98236 3.35297 3.49380 3.57010 3.87543 3.96125 4.14260 4.20204 4.25703 4.30372 4.41014 4.50693 4.70405 4.83273 4.88997 4.89646 4.94082 5.01201 5.06367 5.17292 5.19222 5.39249 5.42580 5.45035 5.56460 5.70412 5.87333 5.92006 5.94105 6.11710 6.52549 6.79546 6.85740 7.04626 8.24475 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.003525 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.834002 B = 7941.101218 C = 8355.119510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.075 0.925 9 C 0.067 3.933 10 C -0.140 4.140 11 C -0.122 4.122 12 C -0.150 4.150 13 C -0.632 4.632 14 S 2.714 3.286 15 O -0.973 6.973 16 O -0.992 6.992 17 N -1.082 6.082 18 C 0.165 3.835 19 H 0.138 0.862 20 C -0.074 4.074 21 C -0.172 4.172 22 C -0.180 4.180 23 C -0.171 4.171 24 C 0.454 3.546 25 O -0.521 6.521 26 O -0.507 6.507 27 C -0.130 4.130 28 H 0.292 0.708 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.432 0.568 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.424 0.576 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.263 -15.890 10.115 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.064 3.936 10 C -0.159 4.159 11 C -0.141 4.141 12 C -0.171 4.171 13 C -0.721 4.721 14 S 2.807 3.193 15 O -0.963 6.963 16 O -0.982 6.982 17 N -0.843 5.843 18 C 0.056 3.944 19 H 0.155 0.845 20 C -0.113 4.113 21 C -0.191 4.191 22 C -0.216 4.216 23 C -0.208 4.208 24 C 0.293 3.707 25 O -0.409 6.409 26 O -0.320 6.320 27 C -0.151 4.151 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.270 0.730 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.286 0.714 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.677 -16.223 9.013 19.139 hybrid contribution 0.589 2.359 0.301 2.450 sum 5.266 -13.864 9.315 17.513 Atomic orbital electron populations 1.69816 1.08924 1.30994 1.35314 1.26754 0.95565 1.04510 0.91027 0.85223 0.78827 0.75430 0.80083 1.18510 1.18733 1.18427 1.19820 0.98436 0.92520 1.42382 0.90722 1.17981 0.92621 0.92795 0.90233 1.21577 0.98265 0.97588 0.98516 1.21092 0.99707 0.92688 1.00597 1.20418 0.97040 0.98132 1.01510 1.30111 1.08672 1.18845 1.14458 1.01026 0.72766 0.73162 0.72377 1.93520 1.52793 1.63351 1.86651 1.93513 1.73215 1.86254 1.45230 1.55206 1.25112 1.81505 1.22428 1.20496 1.03890 0.90750 0.79289 0.84503 1.21388 1.00075 0.89243 1.00584 1.22254 1.06914 0.89604 1.00284 1.23190 0.95849 1.00955 1.01651 1.23062 0.94842 0.98961 1.03906 1.24342 0.74269 0.89787 0.82322 1.90864 1.41156 1.32714 1.76119 1.84418 1.78903 1.47815 1.20837 1.20705 1.00788 0.92430 1.01152 0.89752 0.87168 0.85623 0.84956 0.73037 0.89017 0.86950 0.88505 0.87289 0.88892 0.88542 0.87430 0.71426 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.17 10.97 21.83 0.24 -42.93 16 2 C 0.04 1.87 5.14 85.26 0.44 2.31 16 3 Si 0.98 38.71 29.59 68.60 2.03 40.74 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.50 -27.97 9.05 23.46 0.21 -27.76 16 8 H 0.07 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.07 3.72 5.57 -21.29 -0.12 3.60 16 10 C -0.14 -7.32 8.70 22.73 0.20 -7.13 16 11 C -0.12 -5.51 10.02 22.22 0.22 -5.29 16 12 C -0.15 -6.41 9.53 22.46 0.21 -6.19 16 13 C -0.63 -28.21 5.13 22.22 0.11 -28.10 16 14 S 2.71 99.68 5.71 -56.49 -0.32 99.35 16 15 O -0.97 -36.42 16.60 -128.00 -2.13 -38.55 16 16 O -0.99 -42.24 17.26 -128.00 -2.21 -44.45 16 17 N -1.08 -28.88 4.39 -172.53 -0.76 -29.64 16 18 C 0.17 3.71 2.80 44.25 0.12 3.83 16 19 H 0.14 2.97 7.50 -2.39 -0.02 2.95 16 20 C -0.07 -1.11 5.06 30.59 0.15 -0.95 16 21 C -0.17 -2.71 5.61 -10.79 -0.06 -2.77 16 22 C -0.18 -2.40 10.18 30.62 0.31 -2.09 16 23 C -0.17 -2.11 10.26 30.62 0.31 -1.79 16 24 C 0.45 11.89 7.69 71.24 0.55 12.43 16 25 O -0.52 -18.72 16.38 21.97 0.36 -18.36 16 26 O -0.51 -9.76 13.23 -51.41 -0.68 -10.44 16 27 C -0.13 -6.72 9.26 22.73 0.21 -6.51 16 28 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 29 H 0.11 5.94 6.18 -2.91 -0.02 5.92 16 30 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 31 H 0.13 4.78 7.60 -2.91 -0.02 4.75 16 32 H 0.43 9.55 8.84 -96.75 -0.85 8.70 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 1.28 7.73 -2.38 -0.02 1.26 16 35 H 0.10 1.85 7.69 -2.39 -0.02 1.83 16 36 H 0.11 1.17 8.03 -2.38 -0.02 1.15 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.42 5.68 9.10 -74.06 -0.67 5.01 16 41 H 0.10 5.19 7.60 -2.91 -0.02 5.17 16 Total: -1.00 -74.12 366.56 -1.02 -75.14 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: -0.44 Total: 35.53 kcal Atomic # 6 Polarization: -69.28 SS G_CDS: 2.88 Total: -66.40 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -0.52 Total: -72.57 kcal Atomic # 8 Polarization: -107.14 SS G_CDS: -4.66 Total: -111.80 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: 99.68 SS G_CDS: -0.32 Total: 99.35 kcal Total: -74.12 -1.02 -75.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585819381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.971 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds